Wall clock time and date at job start Tue Mar 31 2020 06:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46898 * 2 1 4 4 C 1.53004 * 109.46827 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46840 * 179.97438 * 4 3 2 6 6 C 1.34776 * 120.00045 * 179.97438 * 5 4 3 7 7 O 1.21278 * 119.99954 * 4.85968 * 6 5 4 8 8 C 1.50699 * 120.00109 * 184.58070 * 6 5 4 9 9 N 1.46903 * 109.47091 * 319.91658 * 8 6 5 10 10 C 1.46897 * 111.00453 * 304.17669 * 9 8 6 11 11 C 1.50698 * 109.47422 * 174.94878 * 10 9 8 12 12 H 1.08000 * 119.99497 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99825 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00204 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99624 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.47377 * 89.99968 * 15 13 11 17 17 H 1.48507 * 109.46953 * 210.00305 * 15 13 11 18 18 H 1.48502 * 109.47157 * 329.99808 * 15 13 11 19 19 C 1.53006 * 109.47178 * 199.92296 * 8 6 5 20 20 C 1.53007 * 109.46784 * 299.99796 * 19 8 6 21 21 C 1.52998 * 109.46931 * 300.00001 * 20 19 8 22 22 C 1.52996 * 109.47313 * 60.00461 * 21 20 19 23 23 C 1.52993 * 109.47436 * 79.92127 * 8 6 5 24 24 H 1.09004 * 109.46953 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47328 * 300.00430 * 1 2 3 26 26 H 1.08997 * 109.47042 * 60.00496 * 1 2 3 27 27 H 1.08997 * 109.47571 * 240.00009 * 2 1 3 28 28 H 1.09007 * 109.47079 * 119.99343 * 2 1 3 29 29 H 1.09001 * 109.47482 * 59.99664 * 3 2 1 30 30 H 1.09000 * 109.47371 * 299.99646 * 3 2 1 31 31 H 1.08997 * 109.47313 * 60.00210 * 4 3 2 32 32 H 1.08997 * 109.47370 * 299.99661 * 4 3 2 33 33 H 0.97000 * 120.00236 * 0.02562 * 5 4 3 34 34 H 1.00898 * 110.99830 * 180.22063 * 9 8 6 35 35 H 1.09000 * 109.47250 * 294.95505 * 10 9 8 36 36 H 1.09002 * 109.46932 * 54.94930 * 10 9 8 37 37 H 0.97003 * 120.00173 * 180.02562 * 14 13 11 38 38 H 1.08999 * 109.47357 * 59.99264 * 19 8 6 39 39 H 1.09002 * 109.47324 * 179.97438 * 19 8 6 40 40 H 1.08997 * 109.46894 * 179.97438 * 20 19 8 41 41 H 1.09002 * 109.47080 * 59.99986 * 20 19 8 42 42 H 1.08992 * 109.47223 * 299.99875 * 21 20 19 43 43 H 1.09004 * 109.46532 * 179.97438 * 21 20 19 44 44 H 1.08996 * 109.47514 * 179.97438 * 22 21 20 45 45 H 1.09002 * 109.47436 * 59.99562 * 22 21 20 46 46 H 1.09002 * 109.47307 * 179.97438 * 23 8 6 47 47 H 1.09000 * 109.46915 * 300.00509 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 5.3833 3.0701 0.0010 7 8 6.1708 2.1520 -0.0867 8 6 5.8863 4.4869 0.1046 9 7 5.0386 5.3682 -0.7096 10 6 4.9816 4.9044 -2.1023 11 6 4.0088 5.7564 -2.8761 12 1 3.4849 6.5616 -2.3824 13 6 3.7868 5.5072 -4.2138 14 7 4.4235 4.5258 -4.8144 15 14 2.5814 6.5639 -5.1731 16 1 3.2991 7.7222 -5.7631 17 1 1.9695 5.7556 -6.2584 18 1 1.5171 7.0535 -4.2605 19 6 7.3281 4.5547 -0.4031 20 6 8.2110 3.6368 0.4448 21 6 8.1627 4.0896 1.9054 22 6 6.7211 4.0218 2.4131 23 6 5.8381 4.9397 1.5651 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9564 -0.8900 31 1 3.9337 0.9286 -0.8891 32 1 3.9330 0.9289 0.8908 33 1 3.4279 3.5611 -0.0003 34 1 5.3578 6.3241 -0.6596 35 1 5.9713 4.9830 -2.5523 36 1 4.6532 3.8653 -2.1260 37 1 4.2676 4.3507 -5.7557 38 1 7.3624 4.2320 -1.4437 39 1 7.6917 5.5796 -0.3287 40 1 9.2380 3.6847 0.0828 41 1 7.8472 2.6120 0.3699 42 1 8.5265 5.1143 1.9803 43 1 8.7914 3.4354 2.5095 44 1 6.6867 4.3440 3.4538 45 1 6.3572 2.9970 2.3382 46 1 6.2024 5.9644 1.6401 47 1 4.8110 4.8914 1.9268 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411386318.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:53 Heat of formation + Delta-G solvation = -67.391638 kcal Electronic energy + Delta-G solvation = -23895.577322 eV Core-core repulsion = 20690.820886 eV Total energy + Delta-G solvation = -3204.756436 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.36294 -37.20713 -35.73776 -34.73254 -33.26889 -32.38933 -30.48711 -29.10116 -28.53992 -25.80385 -24.04350 -22.67520 -22.13880 -21.42541 -21.14031 -20.11381 -18.95915 -16.75051 -15.84209 -15.75783 -15.67539 -14.98112 -14.71734 -14.51932 -14.06771 -13.87193 -13.59958 -13.44193 -13.20737 -12.74797 -12.66032 -12.36692 -12.27051 -11.93412 -11.78213 -11.63097 -11.40269 -11.33164 -11.10039 -11.02224 -10.85797 -10.76989 -10.71513 -10.58175 -10.42725 -10.21061 -9.96808 -9.66376 -9.25269 -8.75549 -8.53562 -8.42090 -7.44907 -6.05365 -4.08391 3.22742 3.28878 3.35476 3.38598 3.73481 4.38537 4.84898 4.91901 4.98182 4.99569 5.09320 5.12424 5.29907 5.30583 5.44532 5.46371 5.57217 5.63888 5.69506 5.72531 5.82190 5.83822 5.86756 5.93838 5.94352 6.02777 6.03368 6.14227 6.24064 6.33421 6.34577 6.38214 6.42973 6.45056 6.59493 6.71273 6.81955 7.15618 7.22866 7.36918 7.69910 8.02673 8.13451 8.25567 8.47926 8.87165 9.00242 9.56352 11.04984 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.009235 B = 0.007247 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3031.183785 B = 3862.740835 C = 6214.206696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.132 4.132 4 C 0.120 3.880 5 N -0.716 5.716 6 C 0.545 3.455 7 O -0.550 6.550 8 C 0.098 3.902 9 N -0.679 5.679 10 C 0.186 3.814 11 C -0.514 4.514 12 H 0.063 0.937 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.128 4.128 20 C -0.142 4.142 21 C -0.113 4.113 22 C -0.120 4.120 23 C -0.099 4.099 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.412 0.588 34 H 0.337 0.663 35 H -0.008 1.008 36 H 0.035 0.965 37 H 0.261 0.739 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.110 0.890 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.186 -4.073 13.357 14.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.170 4.170 4 C -0.004 4.004 5 N -0.368 5.368 6 C 0.332 3.668 7 O -0.428 6.428 8 C 0.003 3.997 9 N -0.310 5.310 10 C 0.060 3.940 11 C -0.553 4.553 12 H 0.081 0.919 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.725 3.275 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.168 4.168 20 C -0.180 4.180 21 C -0.151 4.151 22 C -0.158 4.158 23 C -0.137 4.137 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.249 0.751 34 H 0.155 0.845 35 H 0.010 0.990 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.128 0.872 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.238 -5.151 13.298 14.314 hybrid contribution -0.017 1.220 -1.147 1.675 sum -1.254 -3.931 12.151 12.832 Atomic orbital electron populations 1.21762 0.95763 1.01391 1.01978 1.21423 0.95887 0.96328 1.02182 1.21819 0.94528 0.97541 1.03119 1.21266 0.93539 0.83982 1.01597 1.45955 1.07643 1.08474 1.74710 1.20249 0.81976 0.90601 0.73994 1.90455 1.54846 1.46743 1.50794 1.21086 0.92333 0.91124 0.95182 1.60931 1.51003 1.04850 1.14211 1.19719 0.95883 0.97021 0.81426 1.21111 1.24228 1.15937 0.93992 0.91905 1.24981 0.96341 0.95421 0.97720 1.69974 1.42240 1.29834 1.11221 0.86520 0.81236 0.80147 0.79611 1.20755 1.21316 1.19798 1.22018 0.94486 0.99475 1.00786 1.22041 0.98637 1.03708 0.93587 1.21479 0.96066 1.00470 0.97060 1.21548 0.95741 1.00133 0.98377 1.21487 1.00229 0.99463 0.92568 0.92919 0.92817 0.92509 0.91702 0.92046 0.91536 0.90689 0.91823 0.92376 0.75131 0.84485 0.99031 0.94711 0.92905 0.91135 0.92313 0.93418 0.87231 0.92825 0.92723 0.92280 0.91958 0.91253 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.12 -1.29 5.93 -26.73 -0.16 -1.44 16 3 C -0.13 -1.65 5.33 -26.73 -0.14 -1.79 16 4 C 0.12 1.82 5.68 -4.04 -0.02 1.80 16 5 N -0.72 -12.41 4.77 -60.29 -0.29 -12.70 16 6 C 0.55 10.45 4.01 -10.99 -0.04 10.40 16 7 O -0.55 -11.66 12.92 5.56 0.07 -11.59 16 8 C 0.10 1.72 0.63 -132.75 -0.08 1.64 16 9 N -0.68 -13.37 5.41 -102.40 -0.55 -13.92 16 10 C 0.19 4.65 4.69 -4.98 -0.02 4.63 16 11 C -0.51 -13.92 9.36 -34.44 -0.32 -14.25 16 12 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 15 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 19 C -0.13 -2.31 4.39 -26.72 -0.12 -2.42 16 20 C -0.14 -2.32 5.63 -26.73 -0.15 -2.47 16 21 C -0.11 -1.54 5.92 -26.73 -0.16 -1.69 16 22 C -0.12 -1.61 5.70 -26.73 -0.15 -1.76 16 23 C -0.10 -1.42 5.02 -26.73 -0.13 -1.56 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.41 7.06 7.93 -40.82 -0.32 6.74 16 34 H 0.34 6.35 8.78 -39.29 -0.35 6.00 16 35 H -0.01 -0.22 6.67 -51.93 -0.35 -0.57 16 36 H 0.03 0.95 6.30 -51.93 -0.33 0.62 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.07 1.50 6.61 -51.93 -0.34 1.16 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.11 2.05 4.93 -51.98 -0.26 1.80 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.93 7.01 -51.93 -0.36 0.57 16 46 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 359.55 15.07 5.42 5.42 Total: -1.00 -29.85 359.55 -9.49 -39.34 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -8.62 Total: 11.43 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -1.24 Total: -8.51 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.11 Total: -52.32 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.07 Total: -11.59 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.85 -9.49 -39.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411386318.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.050 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds