Wall clock time and date at job start Tue Mar 31 2020 05:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47261 * 2 1 4 4 C 1.53002 * 109.47268 * 239.99801 * 2 1 3 5 5 C 1.53001 * 109.47320 * 120.00257 * 2 1 3 6 6 H 1.09001 * 110.43192 * 271.66131 * 5 2 1 7 7 C 1.54265 * 110.49026 * 148.97234 * 5 2 1 8 8 C 1.53876 * 106.59886 * 217.71191 * 7 5 2 9 9 C 1.54266 * 106.59948 * 0.02562 * 8 7 5 10 10 C 1.54885 * 104.19736 * 23.60638 * 9 8 7 11 11 H 1.08997 * 110.91531 * 203.67185 * 10 9 8 12 12 N 1.46500 * 110.75323 * 80.37266 * 10 9 8 13 13 C 1.34776 * 119.99947 * 113.24140 * 12 10 9 14 14 O 1.21595 * 120.00120 * 0.02562 * 13 12 10 15 15 N 1.34781 * 120.00483 * 180.02562 * 13 12 10 16 16 C 1.46496 * 120.00421 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47006 * 180.02562 * 16 15 13 18 18 C 1.50705 * 109.47024 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99687 * 359.72878 * 18 17 16 20 20 C 1.37876 * 120.00041 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99949 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99976 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46940 * 89.99650 * 22 20 18 24 24 H 1.48496 * 109.46862 * 209.99403 * 22 20 18 25 25 H 1.48498 * 109.47157 * 329.99960 * 22 20 18 26 26 H 1.09001 * 109.46943 * 280.41533 * 1 2 3 27 27 H 1.08998 * 109.47235 * 40.42040 * 1 2 3 28 28 H 1.08999 * 109.47077 * 160.41711 * 1 2 3 29 29 H 1.08999 * 109.46941 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.46946 * 299.99896 * 3 2 1 31 31 H 1.09002 * 109.46947 * 60.00063 * 3 2 1 32 32 H 1.09004 * 109.47510 * 278.49863 * 4 2 1 33 33 H 1.09004 * 109.46898 * 38.49347 * 4 2 1 34 34 H 1.09003 * 109.47420 * 158.49174 * 4 2 1 35 35 H 1.08996 * 110.03165 * 336.99410 * 7 5 2 36 36 H 1.08995 * 110.03191 * 98.42982 * 7 5 2 37 37 H 1.08997 * 110.03061 * 119.28346 * 8 7 5 38 38 H 1.08996 * 110.03112 * 240.71604 * 8 7 5 39 39 H 1.09004 * 110.48267 * 264.93119 * 9 8 7 40 40 H 1.08998 * 110.48712 * 142.29417 * 9 8 7 41 41 H 0.97001 * 120.00637 * 293.24224 * 12 10 9 42 42 H 0.97002 * 119.99604 * 359.97438 * 15 13 12 43 43 H 1.08997 * 109.47356 * 59.99630 * 16 15 13 44 44 H 1.09006 * 109.46736 * 299.99605 * 16 15 13 45 45 H 1.08997 * 109.47521 * 59.99540 * 17 16 15 46 46 H 1.09006 * 109.46893 * 299.99316 * 17 16 15 47 47 H 0.97001 * 120.00141 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 2.1390 -0.0214 2.0790 7 6 3.3875 -1.4145 0.9601 8 6 3.3675 -2.7501 1.7240 9 6 2.0083 -2.8223 2.4500 10 6 1.0891 -1.8836 1.6297 11 1 0.2605 -1.5212 2.2381 12 7 0.5920 -2.5621 0.4302 13 6 -0.7202 -2.8460 0.3116 14 8 -1.4915 -2.5386 1.1999 15 7 -1.1776 -3.4707 -0.7916 16 6 -2.6039 -3.7788 -0.9208 17 6 -2.8546 -4.4834 -2.2555 18 6 -4.3219 -4.8009 -2.3881 19 1 -5.0063 -4.5313 -1.5973 20 6 -4.7897 -5.4400 -3.5167 21 7 -6.0700 -5.7175 -3.6322 22 14 -3.6047 -5.9131 -4.8810 23 1 -3.0784 -7.2785 -4.6282 24 1 -4.3160 -5.8902 -6.1844 25 1 -2.4777 -4.9467 -4.9150 26 1 -0.3633 0.1858 1.0108 27 1 -0.3633 0.7823 -0.6663 28 1 -0.3633 -0.9682 -0.3444 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.0180 -1.7981 -1.0816 33 1 1.4028 -0.4727 -2.0979 34 1 3.0626 -0.4069 -1.4583 35 1 3.4913 -1.5976 -0.1093 36 1 4.2103 -0.7939 1.3149 37 1 3.4616 -3.5813 1.0252 38 1 4.1806 -2.7776 2.4493 39 1 2.1036 -2.4629 3.4747 40 1 1.6223 -3.8415 2.4367 41 1 1.2071 -2.8071 -0.2786 42 1 -0.5624 -3.7156 -1.5005 43 1 -3.1802 -2.8543 -0.8837 44 1 -2.9103 -4.4310 -0.1029 45 1 -2.2784 -5.4079 -2.2922 46 1 -2.5482 -3.8316 -3.0737 47 1 -6.3991 -6.1675 -4.4260 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413440572.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:20 Heat of formation + Delta-G solvation = -38.660254 kcal Electronic energy + Delta-G solvation = -23676.667852 eV Core-core repulsion = 20473.157302 eV Total energy + Delta-G solvation = -3203.510549 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.93872 -38.69278 -35.43435 -34.87228 -33.38354 -32.64927 -30.10309 -28.69577 -27.96226 -27.28783 -26.77750 -24.69116 -21.53510 -20.99504 -20.70141 -20.07085 -18.68670 -18.05353 -16.85328 -16.09271 -15.59830 -15.52549 -15.27773 -14.52457 -14.22899 -14.12441 -13.84701 -13.63601 -13.49899 -13.22932 -12.98363 -12.58786 -12.39956 -12.05609 -11.68096 -11.51121 -11.46335 -11.45654 -11.35964 -11.18392 -11.09646 -10.82393 -10.52589 -10.44660 -10.36536 -10.33119 -10.20735 -9.95750 -9.70016 -9.30217 -8.82961 -8.60706 -8.31544 -6.09375 -4.09166 3.03350 3.26049 3.33626 3.34938 3.53919 4.30052 4.39029 4.40382 4.49532 4.62669 4.87319 4.89475 4.91254 5.23668 5.25095 5.31318 5.37619 5.42120 5.44946 5.53510 5.58147 5.63093 5.68733 5.73216 5.75266 5.87017 5.89524 5.93624 6.00092 6.02517 6.10580 6.15721 6.27563 6.28437 6.30714 6.49380 6.60973 6.76908 6.86593 7.10086 7.27304 7.35905 7.69623 8.34641 8.48402 8.94795 8.97987 9.50909 11.03758 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023740 B = 0.003749 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.181804 B = 7467.130641 C = 7661.988166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.055 4.055 3 C -0.140 4.140 4 C -0.143 4.143 5 C -0.093 4.093 6 H 0.083 0.917 7 C -0.135 4.135 8 C -0.124 4.124 9 C -0.139 4.139 10 C 0.161 3.839 11 H 0.104 0.896 12 N -0.739 5.739 13 C 0.702 3.298 14 O -0.594 6.594 15 N -0.745 5.745 16 C 0.149 3.851 17 C -0.021 4.021 18 C -0.521 4.521 19 H 0.076 0.924 20 C 0.069 3.931 21 N -0.899 5.899 22 Si 0.882 3.118 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.266 1.266 26 H 0.054 0.946 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.392 0.608 42 H 0.390 0.610 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.016 0.984 46 H 0.021 0.979 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.905 10.382 7.663 26.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.055 4.055 3 C -0.197 4.197 4 C -0.200 4.200 5 C -0.112 4.112 6 H 0.102 0.898 7 C -0.172 4.172 8 C -0.162 4.162 9 C -0.177 4.177 10 C 0.054 3.946 11 H 0.122 0.878 12 N -0.398 5.398 13 C 0.403 3.597 14 O -0.473 6.473 15 N -0.398 5.398 16 C 0.026 3.974 17 C -0.059 4.059 18 C -0.560 4.560 19 H 0.094 0.906 20 C -0.133 4.133 21 N -0.537 5.537 22 Si 0.709 3.291 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.191 1.191 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.229 0.771 42 H 0.223 0.777 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.035 0.965 46 H 0.039 0.961 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 22.003 10.560 8.358 25.797 hybrid contribution 1.128 -0.578 -1.444 1.921 sum 23.131 9.982 6.914 26.124 Atomic orbital electron populations 1.22258 0.93709 1.02941 1.01810 1.20413 0.96144 0.94689 0.94221 1.21944 1.00440 0.95688 1.01659 1.22186 1.00544 0.99878 0.97378 1.22490 0.94529 0.96384 0.97840 0.89841 1.22549 0.97042 0.96055 1.01592 1.22139 0.97470 0.97482 0.99118 1.22808 0.95165 1.00691 0.99082 1.21686 0.96147 0.90828 0.85892 0.87763 1.45426 1.07088 1.64689 1.22567 1.15922 0.82199 0.78517 0.83059 1.90905 1.55652 1.59481 1.41218 1.45564 1.11491 1.62974 1.19802 1.21349 0.76742 0.99675 0.99590 1.19792 0.98551 0.95343 0.92239 1.20927 0.91091 1.38685 1.05270 0.90598 1.24996 0.95034 0.95152 0.98093 1.69906 1.13288 1.41694 1.28854 0.86752 0.81456 0.79225 0.81621 1.20270 1.21308 1.19121 0.92719 0.93682 0.90747 0.92966 0.92806 0.92797 0.92399 0.92631 0.92657 0.90267 0.92092 0.92084 0.92067 0.90822 0.91150 0.77074 0.77748 0.92183 0.92243 0.96542 0.96068 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 7.34 37.16 0.27 -1.55 16 2 C -0.05 -0.50 0.66 -154.51 -0.10 -0.60 16 3 C -0.14 -1.15 8.14 37.16 0.30 -0.85 16 4 C -0.14 -1.20 6.86 37.16 0.26 -0.95 16 5 C -0.09 -0.80 2.45 -88.95 -0.22 -1.02 16 6 H 0.08 0.69 7.90 -51.93 -0.41 0.28 16 7 C -0.14 -0.98 5.85 -25.61 -0.15 -1.13 16 8 C -0.12 -0.94 6.78 -25.61 -0.17 -1.11 16 9 C -0.14 -1.28 6.51 -25.07 -0.16 -1.44 16 10 C 0.16 1.73 2.31 -65.92 -0.15 1.57 16 11 H 0.10 1.38 6.60 -51.93 -0.34 1.04 16 12 N -0.74 -8.69 2.95 -56.72 -0.17 -8.86 16 13 C 0.70 11.43 5.99 -86.91 -0.52 10.91 16 14 O -0.59 -12.09 15.73 5.28 0.08 -12.01 16 15 N -0.74 -12.28 5.56 -65.22 -0.36 -12.65 16 16 C 0.15 3.08 5.61 -4.04 -0.02 3.06 16 17 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 18 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 19 H 0.08 2.32 7.99 -52.48 -0.42 1.90 16 20 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 21 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 22 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 25 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 26 H 0.05 0.72 7.37 -51.93 -0.38 0.33 16 27 H 0.04 0.54 7.98 -51.93 -0.41 0.13 16 28 H 0.07 1.04 3.74 -51.93 -0.19 0.84 16 29 H 0.05 0.38 8.12 -51.93 -0.42 -0.04 16 30 H 0.05 0.45 8.13 -51.93 -0.42 0.03 16 31 H 0.05 0.44 8.13 -51.93 -0.42 0.02 16 32 H 0.06 0.46 3.88 -51.93 -0.20 0.26 16 33 H 0.05 0.51 7.96 -51.93 -0.41 0.10 16 34 H 0.05 0.40 7.28 -51.93 -0.38 0.03 16 35 H 0.08 0.56 4.66 -51.93 -0.24 0.31 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.39 3.84 5.88 -40.82 -0.24 3.60 16 42 H 0.39 5.38 8.49 -40.82 -0.35 5.03 16 43 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 45 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 46 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 47 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 348.39 15.07 5.25 5.25 Total: -1.00 -31.66 348.39 -8.45 -40.12 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -8.14 Total: 5.23 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -1.22 Total: -6.82 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: 0.24 Total: -48.18 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.08 Total: -12.01 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.66 -8.45 -40.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413440572.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.456 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds