Wall clock time and date at job start Tue Mar 31 2020 05:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47261 * 2 1 4 4 C 1.53002 * 109.47268 * 239.99801 * 2 1 3 5 5 C 1.53001 * 109.47320 * 120.00257 * 2 1 3 6 6 H 1.09001 * 110.43192 * 271.66131 * 5 2 1 7 7 C 1.54265 * 110.49026 * 148.97234 * 5 2 1 8 8 C 1.53876 * 106.59886 * 217.71191 * 7 5 2 9 9 C 1.54266 * 106.59948 * 0.02562 * 8 7 5 10 10 C 1.54885 * 104.19736 * 23.60638 * 9 8 7 11 11 H 1.08997 * 110.91531 * 203.67185 * 10 9 8 12 12 N 1.46500 * 110.75323 * 80.37266 * 10 9 8 13 13 C 1.34776 * 119.99947 * 113.24140 * 12 10 9 14 14 O 1.21595 * 120.00120 * 0.02562 * 13 12 10 15 15 N 1.34781 * 120.00483 * 180.02562 * 13 12 10 16 16 C 1.46496 * 120.00421 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47006 * 180.02562 * 16 15 13 18 18 C 1.50705 * 109.47024 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99687 * 359.72878 * 18 17 16 20 20 C 1.37876 * 120.00041 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99949 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99976 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46940 * 89.99650 * 22 20 18 24 24 H 1.48496 * 109.46862 * 209.99403 * 22 20 18 25 25 H 1.48498 * 109.47157 * 329.99960 * 22 20 18 26 26 H 1.09001 * 109.46943 * 280.41533 * 1 2 3 27 27 H 1.08998 * 109.47235 * 40.42040 * 1 2 3 28 28 H 1.08999 * 109.47077 * 160.41711 * 1 2 3 29 29 H 1.08999 * 109.46941 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.46946 * 299.99896 * 3 2 1 31 31 H 1.09002 * 109.46947 * 60.00063 * 3 2 1 32 32 H 1.09004 * 109.47510 * 278.49863 * 4 2 1 33 33 H 1.09004 * 109.46898 * 38.49347 * 4 2 1 34 34 H 1.09003 * 109.47420 * 158.49174 * 4 2 1 35 35 H 1.08996 * 110.03165 * 336.99410 * 7 5 2 36 36 H 1.08995 * 110.03191 * 98.42982 * 7 5 2 37 37 H 1.08997 * 110.03061 * 119.28346 * 8 7 5 38 38 H 1.08996 * 110.03112 * 240.71604 * 8 7 5 39 39 H 1.09004 * 110.48267 * 264.93119 * 9 8 7 40 40 H 1.08998 * 110.48712 * 142.29417 * 9 8 7 41 41 H 0.97001 * 120.00637 * 293.24224 * 12 10 9 42 42 H 0.97002 * 119.99604 * 359.97438 * 15 13 12 43 43 H 1.08997 * 109.47356 * 59.99630 * 16 15 13 44 44 H 1.09006 * 109.46736 * 299.99605 * 16 15 13 45 45 H 1.08997 * 109.47521 * 59.99540 * 17 16 15 46 46 H 1.09006 * 109.46893 * 299.99316 * 17 16 15 47 47 H 0.97001 * 120.00141 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 2.1390 -0.0214 2.0790 7 6 3.3875 -1.4145 0.9601 8 6 3.3675 -2.7501 1.7240 9 6 2.0083 -2.8223 2.4500 10 6 1.0891 -1.8836 1.6297 11 1 0.2605 -1.5212 2.2381 12 7 0.5920 -2.5621 0.4302 13 6 -0.7202 -2.8460 0.3116 14 8 -1.4915 -2.5386 1.1999 15 7 -1.1776 -3.4707 -0.7916 16 6 -2.6039 -3.7788 -0.9208 17 6 -2.8546 -4.4834 -2.2555 18 6 -4.3219 -4.8009 -2.3881 19 1 -5.0063 -4.5313 -1.5973 20 6 -4.7897 -5.4400 -3.5167 21 7 -6.0700 -5.7175 -3.6322 22 14 -3.6047 -5.9131 -4.8810 23 1 -3.0784 -7.2785 -4.6282 24 1 -4.3160 -5.8902 -6.1844 25 1 -2.4777 -4.9467 -4.9150 26 1 -0.3633 0.1858 1.0108 27 1 -0.3633 0.7823 -0.6663 28 1 -0.3633 -0.9682 -0.3444 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.0180 -1.7981 -1.0816 33 1 1.4028 -0.4727 -2.0979 34 1 3.0626 -0.4069 -1.4583 35 1 3.4913 -1.5976 -0.1093 36 1 4.2103 -0.7939 1.3149 37 1 3.4616 -3.5813 1.0252 38 1 4.1806 -2.7776 2.4493 39 1 2.1036 -2.4629 3.4747 40 1 1.6223 -3.8415 2.4367 41 1 1.2071 -2.8071 -0.2786 42 1 -0.5624 -3.7156 -1.5005 43 1 -3.1802 -2.8543 -0.8837 44 1 -2.9103 -4.4310 -0.1029 45 1 -2.2784 -5.4079 -2.2922 46 1 -2.5482 -3.8316 -3.0737 47 1 -6.3991 -6.1675 -4.4260 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413440572.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:19 Heat of formation + Delta-G solvation = -59.252999 kcal Electronic energy + Delta-G solvation = -23677.560820 eV Core-core repulsion = 20473.157302 eV Total energy + Delta-G solvation = -3204.403518 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.93800 -39.85288 -36.64002 -36.09823 -34.84372 -34.32709 -31.85451 -29.54819 -28.70129 -28.04540 -27.67312 -26.48339 -22.88488 -22.32484 -21.88376 -20.94221 -19.72584 -19.14316 -18.90764 -17.10719 -16.81335 -16.44309 -16.26980 -16.18854 -15.55993 -15.37951 -15.13300 -14.64934 -14.59916 -14.54478 -14.24610 -13.68594 -13.33528 -13.24911 -13.05288 -12.80370 -12.44681 -12.27564 -12.21883 -12.18606 -12.12907 -12.03193 -11.85038 -11.75274 -11.59771 -11.51163 -11.29553 -11.18206 -11.16462 -10.99933 -10.77954 -10.16174 -9.55002 -8.29126 -6.36350 1.39441 1.42288 1.53565 1.79806 2.21871 2.37659 3.05979 3.37003 3.56837 3.70259 3.83116 4.12259 4.18642 4.25351 4.36390 4.46545 4.50473 4.62125 4.67262 4.70274 4.74606 4.77038 4.79792 4.84358 4.88811 4.92116 4.99655 5.08420 5.13310 5.16416 5.20976 5.23943 5.29506 5.36237 5.42820 5.43124 5.46136 5.52048 5.56588 5.61627 5.69078 5.79329 6.10281 6.24527 6.70997 7.18826 7.28177 7.67818 8.87831 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023740 B = 0.003749 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.181804 B = 7467.130641 C = 7661.988166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 C -0.137 4.137 4 C -0.142 4.142 5 C -0.085 4.085 6 H 0.089 0.911 7 C -0.129 4.129 8 C -0.119 4.119 9 C -0.136 4.136 10 C 0.153 3.847 11 H 0.073 0.927 12 N -0.716 5.716 13 C 0.703 3.297 14 O -0.639 6.639 15 N -0.735 5.735 16 C 0.167 3.833 17 C -0.010 4.010 18 C -0.539 4.539 19 H 0.028 0.972 20 C 0.004 3.996 21 N -0.951 5.951 22 Si 0.960 3.040 23 H -0.265 1.265 24 H -0.287 1.287 25 H -0.237 1.237 26 H 0.035 0.965 27 H 0.040 0.960 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.406 0.594 42 H 0.408 0.592 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.035 0.965 46 H 0.037 0.963 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.348 10.523 6.366 29.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.052 4.052 3 C -0.195 4.195 4 C -0.199 4.199 5 C -0.105 4.105 6 H 0.107 0.893 7 C -0.166 4.166 8 C -0.157 4.157 9 C -0.175 4.175 10 C 0.048 3.952 11 H 0.091 0.909 12 N -0.375 5.375 13 C 0.404 3.596 14 O -0.521 6.521 15 N -0.391 5.391 16 C 0.042 3.958 17 C -0.048 4.048 18 C -0.577 4.577 19 H 0.046 0.954 20 C -0.193 4.193 21 N -0.591 5.591 22 Si 0.782 3.218 23 H -0.190 1.190 24 H -0.213 1.213 25 H -0.160 1.160 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.246 0.754 42 H 0.243 0.757 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 26.526 10.716 7.063 29.467 hybrid contribution -0.356 -0.565 -0.919 1.136 sum 26.169 10.151 6.144 28.734 Atomic orbital electron populations 1.22230 0.96374 1.01576 1.00345 1.20393 0.93724 0.95926 0.95121 1.21915 1.01510 0.94591 1.01446 1.22187 1.01472 0.99915 0.96332 1.22446 0.94741 0.95522 0.97756 0.89252 1.22528 0.96132 0.95765 1.02148 1.22118 0.96359 0.97849 0.99332 1.22775 0.95847 0.99255 0.99577 1.21814 0.95857 0.92261 0.85309 0.90922 1.45222 1.05432 1.63527 1.23277 1.16006 0.83263 0.78082 0.82233 1.90882 1.57257 1.61166 1.42779 1.45160 1.10006 1.63227 1.20671 1.20823 0.78992 0.98007 0.97961 1.19632 0.95185 0.96479 0.93528 1.21257 0.93396 1.38800 1.04284 0.95401 1.26080 0.97077 0.94854 1.01260 1.70080 1.15979 1.42992 1.30087 0.85528 0.79332 0.79866 0.77072 1.18982 1.21260 1.15968 0.94599 0.94127 0.92618 0.91140 0.93087 0.93083 0.92028 0.93546 0.90618 0.89404 0.90521 0.91656 0.90756 0.90025 0.92632 0.75386 0.75671 0.94297 0.94294 0.94680 0.94520 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 7.34 71.98 0.53 -3.07 16 2 C -0.05 -0.84 0.66 -52.18 -0.03 -0.88 16 3 C -0.14 -1.92 8.14 71.98 0.59 -1.34 16 4 C -0.14 -1.96 6.86 71.98 0.49 -1.46 16 5 C -0.09 -1.28 2.45 -9.71 -0.02 -1.30 16 6 H 0.09 1.28 7.90 -2.39 -0.02 1.26 16 7 C -0.13 -1.36 5.85 31.32 0.18 -1.17 16 8 C -0.12 -1.39 6.78 31.32 0.21 -1.18 16 9 C -0.14 -2.28 6.51 31.67 0.21 -2.08 16 10 C 0.15 3.18 2.31 46.29 0.11 3.28 16 11 H 0.07 2.01 6.60 -2.39 -0.02 1.99 16 12 N -0.72 -16.13 2.95 -451.61 -1.33 -17.46 16 13 C 0.70 23.01 5.99 179.05 1.07 24.08 16 14 O -0.64 -27.12 15.73 -4.01 -0.06 -27.18 16 15 N -0.74 -23.76 5.56 -478.53 -2.66 -26.42 16 16 C 0.17 7.01 5.61 86.38 0.48 7.50 16 17 C -0.01 -0.47 4.16 29.85 0.12 -0.34 16 18 C -0.54 -31.12 9.66 25.60 0.25 -30.88 16 19 H 0.03 1.81 7.99 -2.91 -0.02 1.78 16 20 C 0.00 0.25 5.47 84.65 0.46 0.71 16 21 N -0.95 -59.74 13.96 21.45 0.30 -59.44 16 22 Si 0.96 42.44 27.47 68.60 1.88 44.32 16 23 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 25 H -0.24 -9.27 6.54 99.48 0.65 -8.62 16 26 H 0.03 0.98 7.37 -2.39 -0.02 0.96 16 27 H 0.04 0.98 7.98 -2.39 -0.02 0.97 16 28 H 0.06 1.56 3.74 -2.39 -0.01 1.55 16 29 H 0.07 0.75 8.12 -2.39 -0.02 0.73 16 30 H 0.05 0.75 8.13 -2.39 -0.02 0.73 16 31 H 0.05 0.74 8.13 -2.39 -0.02 0.72 16 32 H 0.06 0.77 3.88 -2.39 -0.01 0.77 16 33 H 0.05 0.74 7.96 -2.39 -0.02 0.73 16 34 H 0.07 0.77 7.28 -2.39 -0.02 0.76 16 35 H 0.09 0.82 4.66 -2.39 -0.01 0.81 16 36 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 39 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.41 6.96 5.88 -92.71 -0.54 6.42 16 42 H 0.41 10.27 8.49 -92.71 -0.79 9.48 16 43 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 45 H 0.03 1.46 7.57 -2.39 -0.02 1.45 16 46 H 0.04 1.55 7.20 -2.38 -0.02 1.53 16 47 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -72.31 348.39 2.35 -69.96 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: -0.43 Total: 24.34 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 4.65 Total: -8.12 kcal Atomic # 7 Polarization: -99.63 SS G_CDS: -3.69 Total: -103.32 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.06 Total: -27.18 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.88 Total: 44.32 kcal Total: -72.31 2.35 -69.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413440572.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.706 kcal (2) G-P(sol) polarization free energy of solvation -72.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds