Wall clock time and date at job start Tue Mar 31 2020 05:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47117 * 2 1 4 4 C 1.53004 * 109.46919 * 240.00057 * 2 1 3 5 5 C 1.53000 * 109.46880 * 120.00214 * 2 1 3 6 6 H 1.08995 * 110.53683 * 213.78033 * 5 2 1 7 7 C 1.54888 * 110.48608 * 336.39498 * 5 2 1 8 8 C 1.54894 * 102.74585 * 156.62116 * 7 5 2 9 9 C 1.54262 * 104.19600 * 322.05450 * 8 7 5 10 10 C 1.53870 * 106.60052 * 23.61313 * 9 8 7 11 11 H 1.09003 * 110.03715 * 119.33024 * 10 9 8 12 12 N 1.46504 * 110.03549 * 240.71677 * 10 9 8 13 13 C 1.34775 * 119.99638 * 270.31309 * 12 10 9 14 14 O 1.21585 * 120.00109 * 359.97438 * 13 12 10 15 15 N 1.34780 * 120.00104 * 179.97438 * 13 12 10 16 16 C 1.46499 * 120.00433 * 179.97438 * 15 13 12 17 17 C 1.52990 * 109.47107 * 179.97438 * 16 15 13 18 18 C 1.50708 * 109.47303 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99393 * 0.02562 * 18 17 16 20 20 C 1.37864 * 120.00411 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00029 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00105 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47060 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47097 * 119.99814 * 22 20 18 25 25 H 1.48504 * 109.46837 * 239.99699 * 22 20 18 26 26 H 1.09004 * 109.46989 * 314.05660 * 1 2 3 27 27 H 1.08997 * 109.46797 * 74.04690 * 1 2 3 28 28 H 1.08995 * 109.47246 * 194.05496 * 1 2 3 29 29 H 1.09005 * 109.47128 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.47599 * 300.00142 * 3 2 1 31 31 H 1.09000 * 109.47058 * 60.00614 * 3 2 1 32 32 H 1.09002 * 109.46698 * 325.39545 * 4 2 1 33 33 H 1.09004 * 109.46603 * 85.38699 * 4 2 1 34 34 H 1.08990 * 109.46924 * 205.39286 * 4 2 1 35 35 H 1.08996 * 110.75806 * 38.30556 * 7 5 2 36 36 H 1.08998 * 110.75614 * 274.93093 * 7 5 2 37 37 H 1.08998 * 110.48423 * 203.37613 * 8 7 5 38 38 H 1.09002 * 110.59969 * 80.79009 * 8 7 5 39 39 H 1.08997 * 110.03327 * 264.32642 * 9 8 7 40 40 H 1.09002 * 110.07146 * 142.91551 * 9 8 7 41 41 H 0.96999 * 119.99966 * 90.30751 * 12 10 9 42 42 H 0.96999 * 119.99500 * 359.97438 * 15 13 12 43 43 H 1.09003 * 109.46465 * 59.99696 * 16 15 13 44 44 H 1.08996 * 109.46857 * 300.00185 * 16 15 13 45 45 H 1.09003 * 109.47522 * 60.00568 * 17 16 15 46 46 H 1.08996 * 109.47596 * 299.99957 * 17 16 15 47 47 H 0.97000 * 120.00340 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 2.9673 -0.2687 1.6003 7 6 0.9672 -0.6953 2.3661 8 6 1.3564 -1.9119 3.2422 9 6 1.8131 -2.9791 2.2263 10 6 2.2478 -2.2222 0.9591 11 1 3.2986 -2.4204 0.7477 12 7 1.4213 -2.6324 -0.1789 13 6 1.7991 -3.6748 -0.9450 14 8 2.8260 -4.2745 -0.6920 15 7 1.0386 -4.0526 -1.9916 16 6 1.4495 -5.1854 -2.8248 17 6 0.4187 -5.4029 -3.9342 18 6 0.8410 -6.5686 -4.7909 19 1 1.7533 -7.1013 -4.5662 20 6 0.0630 -6.9550 -5.8614 21 7 -1.0481 -6.3067 -6.1347 22 14 0.5862 -8.4004 -6.9229 23 1 1.8640 -8.9553 -6.4085 24 1 -0.4627 -9.4507 -6.8808 25 1 0.7736 -7.9437 -8.3235 26 1 -0.3633 0.7146 0.7386 27 1 -0.3633 0.2825 -0.9881 28 1 -0.3633 -0.9968 0.2496 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.3636 -1.5389 -1.4982 33 1 2.0832 -0.0191 -2.0819 34 1 3.0363 -1.1194 -1.0576 35 1 -0.0304 -0.8248 1.9466 36 1 1.0292 0.2294 2.9398 37 1 0.4942 -2.2668 3.8068 38 1 2.1727 -1.6533 3.9167 39 1 0.9872 -3.6517 1.9946 40 1 2.6530 -3.5447 2.6299 41 1 0.6022 -2.1537 -0.3809 42 1 0.2191 -3.5743 -2.1932 43 1 1.5161 -6.0830 -2.2100 44 1 2.4227 -4.9758 -3.2685 45 1 0.3516 -4.5053 -4.5490 46 1 -0.5544 -5.6126 -3.4901 47 1 -1.3201 -5.5564 -5.5834 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413440575.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:24 Heat of formation + Delta-G solvation = -20.372917 kcal Electronic energy + Delta-G solvation = -23558.800751 eV Core-core repulsion = 20356.083200 eV Total energy + Delta-G solvation = -3202.717551 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.17589 -38.70319 -35.46049 -34.91884 -33.76123 -32.93634 -29.50062 -28.40678 -27.94662 -27.16369 -26.92789 -24.17303 -21.73054 -21.22595 -20.75835 -20.24940 -18.91934 -18.18456 -16.60688 -16.17267 -15.72185 -15.46480 -15.12115 -14.48295 -14.31407 -13.97815 -13.72599 -13.70979 -13.43899 -13.25126 -13.03320 -12.59302 -12.19741 -12.06182 -11.86303 -11.70590 -11.55917 -11.48443 -11.23412 -11.11393 -10.96753 -10.89410 -10.56915 -10.47686 -10.41254 -10.38212 -10.14351 -9.97674 -9.80163 -8.67899 -8.64540 -8.38324 -8.17577 -6.42398 -4.11921 3.06583 3.44285 3.47522 3.57913 3.62110 4.24815 4.35535 4.43471 4.51102 4.64841 4.80737 4.82518 4.91158 5.20207 5.30086 5.32309 5.35939 5.37241 5.41341 5.47018 5.50632 5.55076 5.59245 5.70385 5.76463 5.79037 5.80686 5.93749 5.96668 6.01081 6.12818 6.19518 6.22216 6.23463 6.29930 6.36782 6.65742 6.75958 6.92145 7.16123 7.38867 7.39955 8.10734 8.39079 8.41451 8.82225 8.99122 9.59965 10.98871 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027554 B = 0.003408 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.926285 B = 8213.848008 C = 8674.655967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.062 4.062 3 C -0.138 4.138 4 C -0.157 4.157 5 C -0.091 4.091 6 H 0.086 0.914 7 C -0.130 4.130 8 C -0.125 4.125 9 C -0.137 4.137 10 C 0.165 3.835 11 H 0.090 0.910 12 N -0.743 5.743 13 C 0.695 3.305 14 O -0.596 6.596 15 N -0.743 5.743 16 C 0.148 3.852 17 C -0.001 4.001 18 C -0.600 4.600 19 H 0.054 0.946 20 C 0.017 3.983 21 N -0.912 5.912 22 Si 1.076 2.924 23 H -0.288 1.288 24 H -0.287 1.287 25 H -0.287 1.287 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.039 0.961 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.398 0.602 42 H 0.390 0.610 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.013 0.987 46 H 0.012 0.988 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.468 16.057 17.210 23.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.062 4.062 3 C -0.195 4.195 4 C -0.214 4.214 5 C -0.110 4.110 6 H 0.104 0.896 7 C -0.167 4.167 8 C -0.162 4.162 9 C -0.176 4.176 10 C 0.059 3.941 11 H 0.108 0.892 12 N -0.406 5.406 13 C 0.396 3.604 14 O -0.475 6.475 15 N -0.397 5.397 16 C 0.026 3.974 17 C -0.038 4.038 18 C -0.639 4.639 19 H 0.072 0.928 20 C -0.187 4.187 21 N -0.548 5.548 22 Si 0.904 3.096 23 H -0.214 1.214 24 H -0.213 1.213 25 H -0.213 1.213 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.240 0.760 42 H 0.222 0.778 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.031 0.969 46 H 0.031 0.969 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.994 14.556 16.099 21.910 hybrid contribution -0.299 1.363 1.210 1.847 sum 2.695 15.920 17.309 23.671 Atomic orbital electron populations 1.22199 0.95008 1.01352 1.02115 1.20517 0.95273 0.95463 0.94980 1.21917 1.00938 0.95164 1.01514 1.22807 1.02559 1.00293 0.95766 1.22448 0.99381 0.94190 0.94965 0.89600 1.22864 0.99473 0.98040 0.96301 1.22360 1.00763 0.95572 0.97536 1.22650 1.01675 0.98085 0.95227 1.21378 0.95884 0.92300 0.84493 0.89200 1.46261 1.28334 1.34156 1.31817 1.16037 0.83861 0.80420 0.80116 1.90881 1.25956 1.57048 1.73607 1.45577 1.26679 1.36541 1.30857 1.21396 0.99106 0.85625 0.91315 1.19458 0.93955 0.97628 0.92756 1.21947 1.10965 1.16067 1.14916 0.92773 1.25876 0.93978 1.01848 0.97011 1.70742 1.22506 1.20901 1.40693 0.83440 0.75395 0.75045 0.75683 1.21360 1.21295 1.21293 0.91985 0.92315 0.92386 0.92691 0.92653 0.92829 0.90075 0.94236 0.92454 0.90209 0.91613 0.91791 0.91736 0.91244 0.91313 0.76037 0.77753 0.92691 0.92649 0.96896 0.96933 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 6.55 37.16 0.24 -0.90 16 2 C -0.06 -0.53 0.70 -154.51 -0.11 -0.64 16 3 C -0.14 -1.07 8.12 37.15 0.30 -0.76 16 4 C -0.16 -1.75 7.05 37.16 0.26 -1.48 16 5 C -0.09 -0.79 2.60 -88.96 -0.23 -1.02 16 6 H 0.09 0.71 7.83 -51.93 -0.41 0.31 16 7 C -0.13 -0.97 5.59 -24.74 -0.14 -1.11 16 8 C -0.12 -1.02 6.83 -25.07 -0.17 -1.19 16 9 C -0.14 -1.48 6.59 -25.62 -0.17 -1.65 16 10 C 0.17 1.90 2.15 -66.81 -0.14 1.76 16 11 H 0.09 1.23 7.37 -51.93 -0.38 0.85 16 12 N -0.74 -9.49 2.38 -57.58 -0.14 -9.62 16 13 C 0.70 12.18 7.50 -86.92 -0.65 11.52 16 14 O -0.60 -12.87 15.97 5.29 0.08 -12.79 16 15 N -0.74 -13.26 5.46 -65.23 -0.36 -13.61 16 16 C 0.15 3.27 5.61 -4.05 -0.02 3.24 16 17 C 0.00 -0.01 4.40 -27.88 -0.12 -0.14 16 18 C -0.60 -17.05 9.11 -34.44 -0.31 -17.36 16 19 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 20 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 21 N -0.91 -27.51 13.65 55.43 0.76 -26.75 16 22 Si 1.08 25.37 29.90 -169.99 -5.08 20.28 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H 0.06 0.41 7.42 -51.93 -0.39 0.03 16 27 H 0.06 0.45 8.07 -51.93 -0.42 0.03 16 28 H 0.06 0.45 4.91 -51.93 -0.26 0.19 16 29 H 0.05 0.43 8.13 -51.93 -0.42 0.01 16 30 H 0.05 0.43 8.12 -51.93 -0.42 0.01 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.97 3.91 -66.88 -0.26 0.71 16 33 H 0.04 0.43 7.88 -51.93 -0.41 0.02 16 34 H 0.06 0.74 7.02 -51.93 -0.36 0.37 16 35 H 0.08 0.59 5.14 -51.93 -0.27 0.33 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.84 7.92 -51.93 -0.41 0.43 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.40 4.31 3.83 -40.82 -0.16 4.16 16 42 H 0.39 5.98 8.49 -40.82 -0.35 5.64 16 43 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.01 0.33 8.01 -51.93 -0.42 -0.09 16 46 H 0.01 0.32 8.01 -51.93 -0.42 -0.10 16 47 H 0.27 7.97 7.22 -40.82 -0.29 7.68 16 LS Contribution 350.94 15.07 5.29 5.29 Total: -1.00 -32.19 350.94 -9.01 -41.20 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -8.20 Total: 5.36 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -1.36 Total: -9.35 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 0.26 Total: -49.99 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.08 Total: -12.79 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.08 Total: 20.28 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.19 -9.01 -41.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413440575.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.824 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds