Wall clock time and date at job start Tue Mar 31 2020 05:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47117 * 2 1 4 4 C 1.53004 * 109.46919 * 240.00057 * 2 1 3 5 5 C 1.53000 * 109.46880 * 120.00214 * 2 1 3 6 6 H 1.08995 * 110.53683 * 213.78033 * 5 2 1 7 7 C 1.54888 * 110.48608 * 336.39498 * 5 2 1 8 8 C 1.54894 * 102.74585 * 156.62116 * 7 5 2 9 9 C 1.54262 * 104.19600 * 322.05450 * 8 7 5 10 10 C 1.53870 * 106.60052 * 23.61313 * 9 8 7 11 11 H 1.09003 * 110.03715 * 119.33024 * 10 9 8 12 12 N 1.46504 * 110.03549 * 240.71677 * 10 9 8 13 13 C 1.34775 * 119.99638 * 270.31309 * 12 10 9 14 14 O 1.21585 * 120.00109 * 359.97438 * 13 12 10 15 15 N 1.34780 * 120.00104 * 179.97438 * 13 12 10 16 16 C 1.46499 * 120.00433 * 179.97438 * 15 13 12 17 17 C 1.52990 * 109.47107 * 179.97438 * 16 15 13 18 18 C 1.50708 * 109.47303 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99393 * 0.02562 * 18 17 16 20 20 C 1.37864 * 120.00411 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00029 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00105 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47060 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47097 * 119.99814 * 22 20 18 25 25 H 1.48504 * 109.46837 * 239.99699 * 22 20 18 26 26 H 1.09004 * 109.46989 * 314.05660 * 1 2 3 27 27 H 1.08997 * 109.46797 * 74.04690 * 1 2 3 28 28 H 1.08995 * 109.47246 * 194.05496 * 1 2 3 29 29 H 1.09005 * 109.47128 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.47599 * 300.00142 * 3 2 1 31 31 H 1.09000 * 109.47058 * 60.00614 * 3 2 1 32 32 H 1.09002 * 109.46698 * 325.39545 * 4 2 1 33 33 H 1.09004 * 109.46603 * 85.38699 * 4 2 1 34 34 H 1.08990 * 109.46924 * 205.39286 * 4 2 1 35 35 H 1.08996 * 110.75806 * 38.30556 * 7 5 2 36 36 H 1.08998 * 110.75614 * 274.93093 * 7 5 2 37 37 H 1.08998 * 110.48423 * 203.37613 * 8 7 5 38 38 H 1.09002 * 110.59969 * 80.79009 * 8 7 5 39 39 H 1.08997 * 110.03327 * 264.32642 * 9 8 7 40 40 H 1.09002 * 110.07146 * 142.91551 * 9 8 7 41 41 H 0.96999 * 119.99966 * 90.30751 * 12 10 9 42 42 H 0.96999 * 119.99500 * 359.97438 * 15 13 12 43 43 H 1.09003 * 109.46465 * 59.99696 * 16 15 13 44 44 H 1.08996 * 109.46857 * 300.00185 * 16 15 13 45 45 H 1.09003 * 109.47522 * 60.00568 * 17 16 15 46 46 H 1.08996 * 109.47596 * 299.99957 * 17 16 15 47 47 H 0.97000 * 120.00340 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 2.9673 -0.2687 1.6003 7 6 0.9672 -0.6953 2.3661 8 6 1.3564 -1.9119 3.2422 9 6 1.8131 -2.9791 2.2263 10 6 2.2478 -2.2222 0.9591 11 1 3.2986 -2.4204 0.7477 12 7 1.4213 -2.6324 -0.1789 13 6 1.7991 -3.6748 -0.9450 14 8 2.8260 -4.2745 -0.6920 15 7 1.0386 -4.0526 -1.9916 16 6 1.4495 -5.1854 -2.8248 17 6 0.4187 -5.4029 -3.9342 18 6 0.8410 -6.5686 -4.7909 19 1 1.7533 -7.1013 -4.5662 20 6 0.0630 -6.9550 -5.8614 21 7 -1.0481 -6.3067 -6.1347 22 14 0.5862 -8.4004 -6.9229 23 1 1.8640 -8.9553 -6.4085 24 1 -0.4627 -9.4507 -6.8808 25 1 0.7736 -7.9437 -8.3235 26 1 -0.3633 0.7146 0.7386 27 1 -0.3633 0.2825 -0.9881 28 1 -0.3633 -0.9968 0.2496 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.3636 -1.5389 -1.4982 33 1 2.0832 -0.0191 -2.0819 34 1 3.0363 -1.1194 -1.0576 35 1 -0.0304 -0.8248 1.9466 36 1 1.0292 0.2294 2.9398 37 1 0.4942 -2.2668 3.8068 38 1 2.1727 -1.6533 3.9167 39 1 0.9872 -3.6517 1.9946 40 1 2.6530 -3.5447 2.6299 41 1 0.6022 -2.1537 -0.3809 42 1 0.2191 -3.5743 -2.1932 43 1 1.5161 -6.0830 -2.2100 44 1 2.4227 -4.9758 -3.2685 45 1 0.3516 -4.5053 -4.5490 46 1 -0.5544 -5.6126 -3.4901 47 1 -1.3201 -5.5564 -5.5834 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413440575.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:23 Heat of formation + Delta-G solvation = -39.519574 kcal Electronic energy + Delta-G solvation = -23559.631012 eV Core-core repulsion = 20356.083200 eV Total energy + Delta-G solvation = -3203.547812 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.22150 -39.97466 -36.86126 -36.11854 -35.13852 -34.73815 -31.27594 -29.23358 -28.76231 -28.01066 -27.77596 -26.17005 -23.48145 -22.38753 -21.92028 -21.17037 -19.99861 -19.42204 -18.66323 -17.23151 -16.94772 -16.45016 -16.38303 -15.74632 -15.65896 -15.43013 -15.22453 -14.86497 -14.38711 -14.32564 -14.17675 -13.74243 -13.67848 -13.55607 -12.94901 -12.83068 -12.56013 -12.44793 -12.29228 -12.22256 -12.04984 -11.97831 -11.89759 -11.89132 -11.74058 -11.39227 -11.28383 -11.20329 -11.13635 -10.78866 -10.58255 -10.18917 -9.42538 -8.72330 -6.42977 1.53768 1.62574 1.72336 1.80753 2.12525 2.55443 3.13327 3.28338 3.47778 3.61733 3.76369 4.02963 4.10100 4.19325 4.29661 4.35256 4.43507 4.51538 4.59161 4.60985 4.67502 4.69083 4.74198 4.78178 4.81413 4.87775 5.00201 5.03459 5.09175 5.09835 5.13406 5.19446 5.24942 5.27937 5.33736 5.39774 5.41134 5.42955 5.50679 5.56351 5.68426 5.94434 5.97472 6.14228 6.53806 7.05921 7.36561 7.56326 8.70182 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027554 B = 0.003408 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.926285 B = 8213.848008 C = 8674.655967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.059 4.059 3 C -0.136 4.136 4 C -0.155 4.155 5 C -0.082 4.082 6 H 0.094 0.906 7 C -0.123 4.123 8 C -0.117 4.117 9 C -0.138 4.138 10 C 0.159 3.841 11 H 0.062 0.938 12 N -0.719 5.719 13 C 0.695 3.305 14 O -0.639 6.639 15 N -0.737 5.737 16 C 0.169 3.831 17 C 0.009 3.991 18 C -0.622 4.622 19 H 0.048 0.952 20 C -0.031 4.031 21 N -0.933 5.933 22 Si 1.122 2.878 23 H -0.274 1.274 24 H -0.276 1.276 25 H -0.276 1.276 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.039 0.961 34 H 0.033 0.967 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.411 0.589 42 H 0.404 0.596 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.006 0.994 46 H 0.006 0.994 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.829 17.455 18.360 25.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.059 4.059 3 C -0.193 4.193 4 C -0.213 4.213 5 C -0.101 4.101 6 H 0.112 0.888 7 C -0.160 4.160 8 C -0.155 4.155 9 C -0.177 4.177 10 C 0.054 3.946 11 H 0.081 0.919 12 N -0.381 5.381 13 C 0.395 3.605 14 O -0.521 6.521 15 N -0.392 5.392 16 C 0.045 3.955 17 C -0.029 4.029 18 C -0.660 4.660 19 H 0.067 0.933 20 C -0.229 4.229 21 N -0.570 5.570 22 Si 0.943 3.057 23 H -0.199 1.199 24 H -0.202 1.202 25 H -0.202 1.202 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.255 0.745 42 H 0.239 0.761 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.024 0.976 46 H 0.024 0.976 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.318 16.021 17.288 23.684 hybrid contribution -0.067 0.976 0.887 1.321 sum 2.251 16.997 18.175 24.986 Atomic orbital electron populations 1.22209 0.93834 1.01805 1.02831 1.20494 0.96155 0.95865 0.93366 1.21892 1.00716 0.94253 1.02415 1.22768 1.01027 1.00108 0.97410 1.22428 1.00551 0.91540 0.95625 0.88755 1.22868 0.98930 0.98618 0.95556 1.22336 1.01459 0.94729 0.96980 1.22618 1.00747 0.98675 0.95649 1.21568 0.94197 0.94813 0.84063 0.91929 1.46138 1.28629 1.32232 1.31151 1.16133 0.83178 0.81009 0.80169 1.90851 1.27831 1.58732 1.74666 1.45238 1.27390 1.35802 1.30738 1.20868 0.97498 0.86527 0.90654 1.19293 0.94207 0.96334 0.93067 1.22345 1.10906 1.17068 1.15716 0.93325 1.27349 0.93415 1.03843 0.98336 1.70862 1.23579 1.21398 1.41128 0.82860 0.75880 0.72348 0.74574 1.19899 1.20180 1.20196 0.90029 0.92355 0.92568 0.93114 0.92646 0.91044 0.91271 0.94177 0.94767 0.89725 0.89398 0.90855 0.90650 0.92740 0.92356 0.74525 0.76116 0.94047 0.94043 0.97558 0.97572 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 6.55 71.98 0.47 -1.40 16 2 C -0.06 -0.89 0.70 -52.18 -0.04 -0.93 16 3 C -0.14 -1.75 8.12 71.98 0.58 -1.16 16 4 C -0.16 -3.41 7.05 71.98 0.51 -2.91 16 5 C -0.08 -1.27 2.60 -9.72 -0.03 -1.29 16 6 H 0.09 1.35 7.83 -2.39 -0.02 1.33 16 7 C -0.12 -1.42 5.59 31.89 0.18 -1.24 16 8 C -0.12 -1.62 6.83 31.67 0.22 -1.41 16 9 C -0.14 -2.91 6.59 31.32 0.21 -2.71 16 10 C 0.16 3.63 2.15 45.72 0.10 3.72 16 11 H 0.06 1.79 7.37 -2.39 -0.02 1.78 16 12 N -0.72 -18.38 2.38 -454.34 -1.08 -19.46 16 13 C 0.69 24.93 7.50 179.05 1.34 26.27 16 14 O -0.64 -28.63 15.97 -3.98 -0.06 -28.70 16 15 N -0.74 -26.77 5.46 -478.55 -2.61 -29.38 16 16 C 0.17 7.64 5.61 86.38 0.48 8.12 16 17 C 0.01 0.43 4.40 29.85 0.13 0.57 16 18 C -0.62 -35.76 9.11 25.60 0.23 -35.52 16 19 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 20 C -0.03 -1.79 5.46 84.65 0.46 -1.33 16 21 N -0.93 -56.48 13.65 21.44 0.29 -56.19 16 22 Si 1.12 50.49 29.90 68.60 2.05 52.55 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 24 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 26 H 0.08 0.75 7.42 -2.38 -0.02 0.73 16 27 H 0.06 0.76 8.07 -2.39 -0.02 0.74 16 28 H 0.06 0.72 4.91 -2.39 -0.01 0.71 16 29 H 0.05 0.70 8.13 -2.38 -0.02 0.68 16 30 H 0.05 0.73 8.12 -2.39 -0.02 0.71 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 1.64 3.91 -31.90 -0.12 1.51 16 33 H 0.04 0.86 7.88 -2.39 -0.02 0.84 16 34 H 0.03 0.90 7.02 -2.39 -0.02 0.88 16 35 H 0.08 0.94 5.14 -2.39 -0.01 0.93 16 36 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.05 1.31 7.92 -2.39 -0.02 1.29 16 40 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.41 8.56 3.83 -92.71 -0.35 8.21 16 42 H 0.40 12.39 8.49 -92.71 -0.79 11.61 16 43 H 0.04 1.97 8.14 -2.39 -0.02 1.96 16 44 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.01 0.32 8.01 -2.39 -0.02 0.30 16 46 H 0.01 0.31 8.01 -2.39 -0.02 0.30 16 47 H 0.26 15.64 7.22 -92.71 -0.67 14.97 16 Total: -1.00 -70.31 350.94 3.24 -67.07 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: -0.20 Total: 25.33 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 4.85 Total: -11.22 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -3.40 Total: -105.03 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.06 Total: -28.70 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 2.05 Total: 52.55 kcal Total: -70.31 3.24 -67.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413440575.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.549 kcal (2) G-P(sol) polarization free energy of solvation -70.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds