Wall clock time and date at job start Tue Mar 31 2020 05:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47006 * 2 1 4 4 C 1.53009 * 109.46929 * 240.00380 * 2 1 3 5 5 C 1.53001 * 109.47420 * 120.00271 * 2 1 3 6 6 H 1.08997 * 110.01464 * 178.08585 * 5 2 1 7 7 C 1.54266 * 110.02735 * 299.53041 * 5 2 1 8 8 C 1.54896 * 104.19267 * 142.89348 * 7 5 2 9 9 C 1.55011 * 102.75505 * 322.04790 * 8 7 5 10 10 C 1.53870 * 110.03009 * 56.69725 * 5 2 1 11 11 H 1.09004 * 110.03534 * 0.04988 * 10 5 2 12 12 N 1.46500 * 110.03285 * 121.43584 * 10 5 2 13 13 C 1.34778 * 119.99999 * 204.30826 * 12 10 5 14 14 O 1.21593 * 120.00144 * 0.02562 * 13 12 10 15 15 N 1.34772 * 120.00078 * 179.97438 * 13 12 10 16 16 C 1.46502 * 119.99959 * 179.97438 * 15 13 12 17 17 C 1.53004 * 109.46956 * 180.02562 * 16 15 13 18 18 C 1.50699 * 109.47000 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99908 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00045 * 179.72255 * 18 17 16 21 21 N 1.31521 * 120.00041 * 0.27765 * 20 18 17 22 22 Si 1.86797 * 120.00204 * 180.27553 * 20 18 17 23 23 H 1.48498 * 109.47001 * 60.00155 * 22 20 18 24 24 H 1.48497 * 109.47380 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46914 * 300.00125 * 22 20 18 26 26 H 1.08997 * 109.47225 * 304.97170 * 1 2 3 27 27 H 1.08998 * 109.47131 * 64.97459 * 1 2 3 28 28 H 1.08999 * 109.46755 * 184.97461 * 1 2 3 29 29 H 1.08996 * 109.46970 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46985 * 300.00144 * 3 2 1 31 31 H 1.08996 * 109.46924 * 60.00280 * 3 2 1 32 32 H 1.08995 * 109.46706 * 299.99907 * 4 2 1 33 33 H 1.08995 * 109.46814 * 60.00060 * 4 2 1 34 34 H 1.09005 * 109.46905 * 179.97438 * 4 2 1 35 35 H 1.08999 * 110.48876 * 261.56556 * 7 5 2 36 36 H 1.09000 * 110.49206 * 24.08631 * 7 5 2 37 37 H 1.08999 * 110.75214 * 80.36995 * 8 7 5 38 38 H 1.08995 * 110.75843 * 203.73931 * 8 7 5 39 39 H 1.09005 * 110.50404 * 279.29540 * 9 8 7 40 40 H 1.09000 * 110.52757 * 156.61232 * 9 8 7 41 41 H 0.97001 * 120.00329 * 24.30496 * 12 10 5 42 42 H 0.97001 * 120.00250 * 0.02562 * 15 13 12 43 43 H 1.09000 * 109.47242 * 60.00847 * 16 15 13 44 44 H 1.08999 * 109.47066 * 299.99796 * 16 15 13 45 45 H 1.08996 * 109.47602 * 59.99887 * 17 16 15 46 46 H 1.09005 * 109.47038 * 299.99963 * 17 16 15 47 47 H 0.96991 * 120.00166 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0401 -0.7213 1.2492 6 1 3.1295 -0.7562 1.2412 7 6 1.5427 0.0027 2.5174 8 6 1.2428 -1.1430 3.5157 9 6 0.6414 -2.2429 2.6039 10 6 1.4674 -2.1484 1.3045 11 1 0.8268 -2.3275 0.4409 12 7 2.5581 -3.1261 1.3311 13 6 2.3461 -4.3843 0.8969 14 8 1.2497 -4.7078 0.4825 15 7 3.3496 -5.2836 0.9209 16 6 3.1189 -6.6513 0.4494 17 6 4.4099 -7.4615 0.5836 18 6 4.1724 -8.8687 0.0991 19 1 3.1983 -9.1561 -0.2681 20 6 5.2004 -9.7873 0.1190 21 7 6.3868 -9.4371 0.5658 22 14 4.9082 -11.5293 -0.4887 23 1 4.4871 -11.4929 -1.9123 24 1 6.1627 -12.3141 -0.3641 25 1 3.8426 -12.1657 0.3266 26 1 -0.3633 0.5890 0.8421 27 1 -0.3633 0.4347 -0.9312 28 1 -0.3633 -1.0238 0.0891 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7488 -1.2494 33 1 1.6766 -0.2073 -2.1392 34 1 3.1300 -0.7208 -1.2496 35 1 2.3190 0.6585 2.9115 36 1 0.6376 0.5706 2.3023 37 1 2.1602 -1.4927 3.9893 38 1 0.5180 -0.8232 4.2644 39 1 -0.4105 -2.0392 2.4029 40 1 0.7601 -3.2253 3.0608 41 1 3.4330 -2.8680 1.6613 42 1 4.2244 -5.0255 1.2511 43 1 2.8112 -6.6282 -0.5960 44 1 2.3354 -7.1150 1.0488 45 1 4.7174 -7.4847 1.6290 46 1 5.1937 -6.9980 -0.0155 47 1 7.1098 -10.0834 0.5801 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413440577.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:28 Heat of formation + Delta-G solvation = -68.024558 kcal Electronic energy + Delta-G solvation = -22950.926844 eV Core-core repulsion = 19746.142963 eV Total energy + Delta-G solvation = -3204.783881 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.45885 -38.84123 -35.53242 -34.67123 -33.30906 -32.68013 -29.65803 -28.43388 -27.81482 -27.46767 -26.69738 -24.55047 -21.60255 -21.31358 -20.73040 -19.96457 -18.79450 -17.49723 -16.64842 -16.22903 -15.82841 -14.99397 -14.95659 -14.49434 -14.46430 -14.22330 -13.86554 -13.49149 -13.34909 -13.08790 -12.64112 -12.55063 -12.29329 -12.16804 -11.81606 -11.76666 -11.54128 -11.39514 -11.16413 -11.10600 -11.01085 -10.98086 -10.62878 -10.53206 -10.49720 -10.39676 -10.26941 -9.84545 -9.50858 -9.24039 -8.88015 -8.44882 -8.18265 -6.06891 -4.09441 3.14674 3.33074 3.36627 3.40664 3.66716 4.29181 4.39064 4.41789 4.47372 4.78230 4.81853 4.88207 4.94562 5.22175 5.30073 5.32862 5.36971 5.41635 5.45052 5.48412 5.55377 5.59559 5.64229 5.70989 5.77701 5.78945 5.83460 5.95141 5.99749 6.05156 6.11255 6.17478 6.28031 6.31931 6.37567 6.44126 6.79560 6.84877 7.06892 7.33274 7.60671 7.66705 7.92565 8.29469 8.51996 8.95780 9.08952 9.55101 11.04797 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031124 B = 0.002954 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.418989 B = 9477.758587 C = 9707.405212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.060 4.060 3 C -0.140 4.140 4 C -0.145 4.145 5 C -0.087 4.087 6 H 0.078 0.922 7 C -0.121 4.121 8 C -0.125 4.125 9 C -0.135 4.135 10 C 0.162 3.838 11 H 0.095 0.905 12 N -0.746 5.746 13 C 0.698 3.302 14 O -0.599 6.599 15 N -0.740 5.740 16 C 0.141 3.859 17 C 0.014 3.986 18 C -0.521 4.521 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.391 0.609 42 H 0.392 0.608 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.021 0.979 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.835 23.430 3.197 24.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.060 4.060 3 C -0.197 4.197 4 C -0.202 4.202 5 C -0.107 4.107 6 H 0.096 0.904 7 C -0.159 4.159 8 C -0.162 4.162 9 C -0.174 4.174 10 C 0.057 3.943 11 H 0.113 0.887 12 N -0.401 5.401 13 C 0.398 3.602 14 O -0.478 6.478 15 N -0.394 5.394 16 C 0.018 3.982 17 C -0.024 4.024 18 C -0.560 4.560 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.201 1.201 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.224 0.776 42 H 0.225 0.775 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.674 23.013 2.813 24.754 hybrid contribution 0.878 -0.786 0.026 1.179 sum -7.796 22.227 2.838 23.725 Atomic orbital electron populations 1.22035 0.94578 1.02431 1.01543 1.20523 0.95749 0.95182 0.94573 1.21881 1.00902 0.95328 1.01634 1.21928 1.00983 1.00826 0.96481 1.22105 1.00345 0.93598 0.94606 0.90413 1.22519 1.01267 0.97550 0.94523 1.22528 1.00676 0.95615 0.97416 1.22835 0.99321 0.99367 0.95902 1.21509 0.88062 0.86088 0.98678 0.88712 1.45324 1.14287 1.10211 1.70325 1.16098 0.84837 0.80511 0.78783 1.90878 1.23857 1.79086 1.53992 1.45540 1.12492 1.12566 1.68772 1.21560 1.00735 0.77836 0.98075 1.19314 0.90971 0.94357 0.97755 1.21028 0.97092 0.95140 1.42700 0.92285 1.24995 0.95050 0.99023 0.95227 1.69947 1.01733 1.35203 1.46533 0.86570 0.77438 0.84043 0.79472 1.20111 1.21270 1.20106 0.92348 0.92763 0.91940 0.92774 0.92780 0.92519 0.92006 0.92815 0.92747 0.91759 0.90826 0.91628 0.91758 0.91148 0.91115 0.77557 0.77511 0.92888 0.92897 0.96030 0.96023 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 7.92 37.16 0.29 -0.93 16 2 C -0.06 -0.50 0.53 -154.50 -0.08 -0.58 16 3 C -0.14 -0.98 8.23 37.16 0.31 -0.68 16 4 C -0.14 -1.41 8.26 37.16 0.31 -1.10 16 5 C -0.09 -0.75 2.07 -89.50 -0.18 -0.94 16 6 H 0.08 0.66 7.61 -51.93 -0.40 0.27 16 7 C -0.12 -0.90 5.07 -25.07 -0.13 -1.03 16 8 C -0.12 -1.06 6.91 -24.67 -0.17 -1.23 16 9 C -0.14 -1.48 6.54 -25.00 -0.16 -1.65 16 10 C 0.16 1.86 1.75 -66.81 -0.12 1.74 16 11 H 0.10 1.30 4.45 -51.93 -0.23 1.07 16 12 N -0.75 -9.62 5.04 -57.58 -0.29 -9.91 16 13 C 0.70 12.37 8.56 -86.92 -0.74 11.63 16 14 O -0.60 -13.00 16.01 5.28 0.08 -12.92 16 15 N -0.74 -13.37 5.56 -65.22 -0.36 -13.74 16 16 C 0.14 3.09 5.61 -4.04 -0.02 3.07 16 17 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 18 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 21 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 22 Si 0.90 21.59 29.54 -169.99 -5.02 16.56 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H 0.06 0.42 6.29 -51.93 -0.33 0.09 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.60 6.13 -51.93 -0.32 0.28 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.36 7.05 -51.93 -0.37 -0.01 16 32 H 0.06 0.74 6.69 -51.93 -0.35 0.39 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.52 5.57 -51.93 -0.29 0.23 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.93 8.04 -51.93 -0.42 0.52 16 41 H 0.39 4.08 8.32 -40.82 -0.34 3.74 16 42 H 0.39 6.12 8.49 -40.82 -0.35 5.77 16 43 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 362.39 15.07 5.46 5.46 Total: -1.00 -31.68 362.39 -9.06 -40.75 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -8.41 Total: 4.31 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -1.26 Total: -4.88 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.08 Total: -49.28 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.08 Total: -12.92 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.68 -9.06 -40.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413440577.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.279 kcal (2) G-P(sol) polarization free energy of solvation -31.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds