Wall clock time and date at job start Tue Mar 31 2020 05:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47006 * 2 1 4 4 C 1.53009 * 109.46929 * 240.00380 * 2 1 3 5 5 C 1.53001 * 109.47420 * 120.00271 * 2 1 3 6 6 H 1.08997 * 110.01464 * 178.08585 * 5 2 1 7 7 C 1.54266 * 110.02735 * 299.53041 * 5 2 1 8 8 C 1.54896 * 104.19267 * 142.89348 * 7 5 2 9 9 C 1.55011 * 102.75505 * 322.04790 * 8 7 5 10 10 C 1.53870 * 110.03009 * 56.69725 * 5 2 1 11 11 H 1.09004 * 110.03534 * 0.04988 * 10 5 2 12 12 N 1.46500 * 110.03285 * 121.43584 * 10 5 2 13 13 C 1.34778 * 119.99999 * 204.30826 * 12 10 5 14 14 O 1.21593 * 120.00144 * 0.02562 * 13 12 10 15 15 N 1.34772 * 120.00078 * 179.97438 * 13 12 10 16 16 C 1.46502 * 119.99959 * 179.97438 * 15 13 12 17 17 C 1.53004 * 109.46956 * 180.02562 * 16 15 13 18 18 C 1.50699 * 109.47000 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99908 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00045 * 179.72255 * 18 17 16 21 21 N 1.31521 * 120.00041 * 0.27765 * 20 18 17 22 22 Si 1.86797 * 120.00204 * 180.27553 * 20 18 17 23 23 H 1.48498 * 109.47001 * 60.00155 * 22 20 18 24 24 H 1.48497 * 109.47380 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46914 * 300.00125 * 22 20 18 26 26 H 1.08997 * 109.47225 * 304.97170 * 1 2 3 27 27 H 1.08998 * 109.47131 * 64.97459 * 1 2 3 28 28 H 1.08999 * 109.46755 * 184.97461 * 1 2 3 29 29 H 1.08996 * 109.46970 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46985 * 300.00144 * 3 2 1 31 31 H 1.08996 * 109.46924 * 60.00280 * 3 2 1 32 32 H 1.08995 * 109.46706 * 299.99907 * 4 2 1 33 33 H 1.08995 * 109.46814 * 60.00060 * 4 2 1 34 34 H 1.09005 * 109.46905 * 179.97438 * 4 2 1 35 35 H 1.08999 * 110.48876 * 261.56556 * 7 5 2 36 36 H 1.09000 * 110.49206 * 24.08631 * 7 5 2 37 37 H 1.08999 * 110.75214 * 80.36995 * 8 7 5 38 38 H 1.08995 * 110.75843 * 203.73931 * 8 7 5 39 39 H 1.09005 * 110.50404 * 279.29540 * 9 8 7 40 40 H 1.09000 * 110.52757 * 156.61232 * 9 8 7 41 41 H 0.97001 * 120.00329 * 24.30496 * 12 10 5 42 42 H 0.97001 * 120.00250 * 0.02562 * 15 13 12 43 43 H 1.09000 * 109.47242 * 60.00847 * 16 15 13 44 44 H 1.08999 * 109.47066 * 299.99796 * 16 15 13 45 45 H 1.08996 * 109.47602 * 59.99887 * 17 16 15 46 46 H 1.09005 * 109.47038 * 299.99963 * 17 16 15 47 47 H 0.96991 * 120.00166 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 2.0401 -0.7213 1.2492 6 1 3.1295 -0.7562 1.2412 7 6 1.5427 0.0027 2.5174 8 6 1.2428 -1.1430 3.5157 9 6 0.6414 -2.2429 2.6039 10 6 1.4674 -2.1484 1.3045 11 1 0.8268 -2.3275 0.4409 12 7 2.5581 -3.1261 1.3311 13 6 2.3461 -4.3843 0.8969 14 8 1.2497 -4.7078 0.4825 15 7 3.3496 -5.2836 0.9209 16 6 3.1189 -6.6513 0.4494 17 6 4.4099 -7.4615 0.5836 18 6 4.1724 -8.8687 0.0991 19 1 3.1983 -9.1561 -0.2681 20 6 5.2004 -9.7873 0.1190 21 7 6.3868 -9.4371 0.5658 22 14 4.9082 -11.5293 -0.4887 23 1 4.4871 -11.4929 -1.9123 24 1 6.1627 -12.3141 -0.3641 25 1 3.8426 -12.1657 0.3266 26 1 -0.3633 0.5890 0.8421 27 1 -0.3633 0.4347 -0.9312 28 1 -0.3633 -1.0238 0.0891 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7488 -1.2494 33 1 1.6766 -0.2073 -2.1392 34 1 3.1300 -0.7208 -1.2496 35 1 2.3190 0.6585 2.9115 36 1 0.6376 0.5706 2.3023 37 1 2.1602 -1.4927 3.9893 38 1 0.5180 -0.8232 4.2644 39 1 -0.4105 -2.0392 2.4029 40 1 0.7601 -3.2253 3.0608 41 1 3.4330 -2.8680 1.6613 42 1 4.2244 -5.0255 1.2511 43 1 2.8112 -6.6282 -0.5960 44 1 2.3354 -7.1150 1.0488 45 1 4.7174 -7.4847 1.6290 46 1 5.1937 -6.9980 -0.0155 47 1 7.1098 -10.0834 0.5801 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413440577.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:27 Heat of formation + Delta-G solvation = -87.875677 kcal Electronic energy + Delta-G solvation = -22951.787653 eV Core-core repulsion = 19746.142963 eV Total energy + Delta-G solvation = -3205.644690 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.50443 -40.05341 -36.71866 -36.13473 -34.85944 -34.28017 -31.45872 -29.29508 -28.64582 -28.16681 -27.53972 -26.44734 -23.16407 -22.30338 -22.10956 -21.03530 -19.88725 -18.64665 -18.37555 -17.61607 -16.80676 -16.49378 -16.35705 -16.08278 -15.40804 -15.17792 -15.01658 -14.93694 -14.54976 -14.29223 -14.11631 -13.34621 -13.28172 -13.21548 -12.96595 -12.91599 -12.56064 -12.52353 -12.49450 -12.40710 -12.19834 -12.11859 -11.85667 -11.76006 -11.66476 -11.50099 -11.26006 -11.21026 -11.13868 -11.04410 -10.60123 -10.25877 -9.65900 -8.24110 -6.34593 1.41526 1.44186 1.52004 1.82211 2.20824 2.41489 3.10493 3.40222 3.53689 3.66371 3.81231 4.13155 4.15607 4.19837 4.46923 4.47246 4.51592 4.61415 4.62815 4.69886 4.71830 4.77223 4.85817 4.87130 4.89808 4.95383 5.00637 5.07598 5.08477 5.16721 5.22685 5.28152 5.30279 5.33856 5.40006 5.44109 5.52352 5.59049 5.59245 5.62917 5.74720 5.79469 6.09341 6.17427 6.78294 7.17427 7.34728 7.65324 8.87695 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031124 B = 0.002954 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.418989 B = 9477.758587 C = 9707.405212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.058 4.058 3 C -0.136 4.136 4 C -0.143 4.143 5 C -0.080 4.080 6 H 0.085 0.915 7 C -0.113 4.113 8 C -0.118 4.118 9 C -0.136 4.136 10 C 0.158 3.842 11 H 0.070 0.930 12 N -0.725 5.725 13 C 0.697 3.303 14 O -0.641 6.641 15 N -0.735 5.735 16 C 0.162 3.838 17 C 0.026 3.974 18 C -0.548 4.548 19 H 0.058 0.942 20 C 0.008 3.992 21 N -0.927 5.927 22 Si 0.965 3.035 23 H -0.269 1.269 24 H -0.280 1.280 25 H -0.268 1.268 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.042 0.958 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.043 0.957 41 H 0.407 0.593 42 H 0.406 0.594 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.008 0.992 46 H 0.008 0.992 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.723 25.076 3.724 26.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.058 4.058 3 C -0.193 4.193 4 C -0.201 4.201 5 C -0.099 4.099 6 H 0.103 0.897 7 C -0.150 4.150 8 C -0.156 4.156 9 C -0.175 4.175 10 C 0.053 3.947 11 H 0.088 0.912 12 N -0.381 5.381 13 C 0.397 3.603 14 O -0.523 6.523 15 N -0.390 5.390 16 C 0.037 3.963 17 C -0.012 4.012 18 C -0.587 4.587 19 H 0.076 0.924 20 C -0.191 4.191 21 N -0.566 5.566 22 Si 0.789 3.211 23 H -0.193 1.193 24 H -0.205 1.205 25 H -0.193 1.193 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.243 0.757 42 H 0.241 0.759 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.026 0.974 46 H 0.027 0.973 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.537 24.717 3.365 26.366 hybrid contribution 0.825 -1.260 -0.143 1.512 sum -7.712 23.458 3.222 24.903 Atomic orbital electron populations 1.22028 0.94566 1.01489 1.02422 1.20515 0.95753 0.96046 0.93472 1.21841 1.01074 0.93899 1.02486 1.21913 1.00947 0.99376 0.97828 1.22080 1.00596 0.91530 0.95742 0.89722 1.22504 1.02257 0.97166 0.93084 1.22501 1.00802 0.94863 0.97386 1.22804 0.99673 0.99049 0.96011 1.21681 0.87568 0.87294 0.98128 0.91165 1.45193 1.15575 1.08597 1.68707 1.16211 0.83901 0.81601 0.78597 1.90849 1.25492 1.80085 1.55843 1.45230 1.13441 1.11372 1.68959 1.21037 0.98568 0.79416 0.97250 1.19109 0.91841 0.93915 0.96326 1.21445 0.97339 0.96721 1.43184 0.92358 1.25872 0.94701 1.03373 0.95173 1.70050 1.02537 1.36753 1.47259 0.85497 0.77673 0.78736 0.79147 1.19347 1.20475 1.19337 0.90848 0.92405 0.93906 0.92480 0.92455 0.91202 0.94917 0.92204 0.92678 0.89839 0.89911 0.91533 0.90487 0.90964 0.93829 0.75726 0.75918 0.94066 0.94075 0.97356 0.97346 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 7.92 71.98 0.57 -1.68 16 2 C -0.06 -0.86 0.53 -52.18 -0.03 -0.89 16 3 C -0.14 -1.51 8.23 71.98 0.59 -0.91 16 4 C -0.14 -2.72 8.26 71.99 0.59 -2.13 16 5 C -0.08 -1.24 2.07 -10.07 -0.02 -1.26 16 6 H 0.08 1.22 7.61 -2.39 -0.02 1.20 16 7 C -0.11 -1.32 5.07 31.67 0.16 -1.16 16 8 C -0.12 -1.74 6.91 31.93 0.22 -1.52 16 9 C -0.14 -2.94 6.54 31.71 0.21 -2.73 16 10 C 0.16 3.59 1.75 45.71 0.08 3.67 16 11 H 0.07 2.00 4.45 -2.39 -0.01 1.99 16 12 N -0.72 -18.59 5.04 -454.34 -2.29 -20.88 16 13 C 0.70 25.21 8.56 179.06 1.53 26.74 16 14 O -0.64 -28.79 16.01 -4.01 -0.06 -28.86 16 15 N -0.74 -26.97 5.56 -478.52 -2.66 -29.63 16 16 C 0.16 7.30 5.61 86.38 0.48 7.79 16 17 C 0.03 1.32 5.09 29.85 0.15 1.48 16 18 C -0.55 -31.25 9.11 25.60 0.23 -31.01 16 19 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 20 C 0.01 0.43 5.46 84.65 0.46 0.89 16 21 N -0.93 -54.83 13.29 21.45 0.28 -54.55 16 22 Si 0.97 44.12 29.54 68.60 2.03 46.14 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 26 H 0.07 0.88 6.29 -2.39 -0.02 0.87 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.04 0.82 6.13 -2.39 -0.01 0.81 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.61 7.05 -2.39 -0.02 0.60 16 32 H 0.03 0.80 6.69 -2.39 -0.02 0.79 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 0.86 5.57 -2.39 -0.01 0.84 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.04 1.17 8.04 -2.39 -0.02 1.15 16 41 H 0.41 8.00 8.32 -92.71 -0.77 7.22 16 42 H 0.41 12.63 8.49 -92.71 -0.79 11.84 16 43 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 47 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -69.05 362.39 1.93 -67.12 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -0.61 Total: 23.39 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 5.24 Total: -2.74 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -4.67 Total: -105.06 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.06 Total: -28.86 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -69.05 1.93 -67.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413440577.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.756 kcal (2) G-P(sol) polarization free energy of solvation -69.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds