Wall clock time and date at job start Tue Mar 31 2020 05:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 6 6 H 1.08998 * 110.01700 * 179.97438 * 5 2 1 7 7 C 1.54273 * 110.03296 * 58.54328 * 5 2 1 8 8 C 1.54888 * 104.19438 * 217.10571 * 7 5 2 9 9 C 1.54894 * 102.74991 * 37.94142 * 8 7 5 10 10 C 1.53880 * 110.03086 * 301.37755 * 5 2 1 11 11 H 1.08992 * 110.03088 * 0.02562 * 10 5 2 12 12 N 1.46494 * 110.02919 * 238.56788 * 10 5 2 13 13 C 1.34778 * 119.99785 * 154.99982 * 12 10 5 14 14 O 1.21582 * 120.00254 * 0.02562 * 13 12 10 15 15 N 1.34779 * 120.00162 * 179.97438 * 13 12 10 16 16 C 1.46502 * 120.00428 * 180.02562 * 15 13 12 17 17 C 1.52991 * 109.47301 * 180.02562 * 16 15 13 18 18 C 1.50707 * 109.47164 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99477 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00258 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99797 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00259 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46820 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47529 * 119.99892 * 22 20 18 25 25 H 1.48503 * 109.47430 * 240.00469 * 22 20 18 26 26 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 29 29 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 30 30 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 32 32 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 33 33 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 35 35 H 1.08990 * 110.48500 * 335.78294 * 7 5 2 36 36 H 1.08997 * 110.48636 * 98.42894 * 7 5 2 37 37 H 1.08999 * 110.75717 * 156.25652 * 8 7 5 38 38 H 1.09005 * 110.76027 * 279.44534 * 8 7 5 39 39 H 1.08996 * 110.48054 * 80.73881 * 9 8 7 40 40 H 1.09003 * 110.48465 * 203.24384 * 9 8 7 41 41 H 0.96995 * 120.00784 * 335.00236 * 12 10 5 42 42 H 0.96998 * 119.99864 * 0.02562 * 15 13 12 43 43 H 1.09002 * 109.46989 * 300.00766 * 16 15 13 44 44 H 1.09001 * 109.46536 * 59.99598 * 16 15 13 45 45 H 1.08999 * 109.46983 * 299.99828 * 17 16 15 46 46 H 1.08994 * 109.47631 * 60.00222 * 17 16 15 47 47 H 0.97003 * 119.99857 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0401 -0.7211 -1.2493 6 1 3.1300 -0.7259 -1.2585 7 6 1.5031 -0.0255 -2.5173 8 6 1.2192 -1.1901 -3.4981 9 6 0.6633 -2.2948 -2.5654 10 6 1.5061 -2.1640 -1.2799 11 1 0.8833 -2.3502 -0.4050 12 7 2.6227 -3.1117 -1.3133 13 6 2.4561 -4.3660 -0.8492 14 8 1.3790 -4.7111 -0.4032 15 7 3.4832 -5.2381 -0.8804 16 6 3.3020 -6.6017 -0.3764 17 6 4.6115 -7.3787 -0.5255 18 6 4.4249 -8.7817 -0.0076 19 1 3.4681 -9.0881 0.3886 20 6 5.4756 -9.6738 -0.0396 21 7 6.6409 -9.3003 -0.5217 22 14 5.2445 -11.4125 0.6029 23 1 3.8514 -11.5793 1.0894 24 1 5.5073 -12.3831 -0.4897 25 1 6.1911 -11.6571 1.7207 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 -1.7490 1.2492 33 1 3.1301 -0.7209 1.2493 34 1 1.6767 -0.2075 2.1392 35 1 0.5850 0.5179 -2.2944 36 1 2.2547 0.6469 -2.9308 37 1 0.4742 -0.8987 -4.2385 38 1 2.1378 -1.5179 -3.9849 39 1 -0.3904 -2.1177 -2.3504 40 1 0.8000 -3.2782 -3.0152 41 1 3.4819 -2.8365 -1.6694 42 1 4.3425 -4.9629 -1.2366 43 1 3.0190 -6.5656 0.6756 44 1 2.5173 -7.0985 -0.9469 45 1 4.8948 -7.4148 -1.5774 46 1 5.3959 -6.8818 0.0452 47 1 7.3800 -9.9281 -0.5446 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413440578.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:32 Heat of formation + Delta-G solvation = -67.747823 kcal Electronic energy + Delta-G solvation = -22952.578301 eV Core-core repulsion = 19747.806420 eV Total energy + Delta-G solvation = -3204.771881 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.45898 -38.84307 -35.53518 -34.67502 -33.31315 -32.68303 -29.65858 -28.41713 -27.81591 -27.47775 -26.70207 -24.55379 -21.60470 -21.31238 -20.73072 -19.96921 -18.79202 -17.49774 -16.64206 -16.23248 -15.83465 -14.99854 -14.95621 -14.48640 -14.46122 -14.24269 -13.85958 -13.49423 -13.35548 -13.09113 -12.67013 -12.54051 -12.29066 -12.14673 -11.81535 -11.77609 -11.54111 -11.39506 -11.14876 -11.10757 -11.02581 -10.99656 -10.59689 -10.53149 -10.48859 -10.38835 -10.28549 -9.83897 -9.51479 -9.21302 -8.88034 -8.45818 -8.18374 -6.07334 -4.09662 3.14722 3.29901 3.37528 3.43267 3.66703 4.29317 4.39156 4.41698 4.47406 4.78158 4.82048 4.88363 4.94280 5.22201 5.29895 5.31987 5.36944 5.41794 5.46840 5.47973 5.55788 5.59372 5.63785 5.71220 5.77594 5.79228 5.83511 5.95868 5.99921 6.05182 6.11048 6.17563 6.28772 6.31935 6.37738 6.44028 6.79546 6.84864 7.06886 7.33346 7.60912 7.66533 7.92440 8.29297 8.51972 8.96038 9.08943 9.55050 11.04414 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031092 B = 0.002955 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.345878 B = 9472.717745 C = 9704.068042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.060 4.060 3 C -0.140 4.140 4 C -0.145 4.145 5 C -0.088 4.088 6 H 0.078 0.922 7 C -0.122 4.122 8 C -0.125 4.125 9 C -0.135 4.135 10 C 0.163 3.837 11 H 0.095 0.905 12 N -0.745 5.745 13 C 0.698 3.302 14 O -0.599 6.599 15 N -0.740 5.740 16 C 0.141 3.859 17 C 0.013 3.987 18 C -0.519 4.519 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.284 1.284 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.391 0.609 42 H 0.392 0.608 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.022 0.978 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.595 23.156 -3.426 24.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.060 4.060 3 C -0.197 4.197 4 C -0.202 4.202 5 C -0.107 4.107 6 H 0.096 0.904 7 C -0.160 4.160 8 C -0.162 4.162 9 C -0.174 4.174 10 C 0.057 3.943 11 H 0.113 0.887 12 N -0.401 5.401 13 C 0.398 3.602 14 O -0.478 6.478 15 N -0.394 5.394 16 C 0.018 3.982 17 C -0.025 4.025 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.224 0.776 42 H 0.225 0.775 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.424 22.724 -3.012 24.784 hybrid contribution 0.926 -0.766 -0.049 1.202 sum -8.498 21.958 -3.061 23.744 Atomic orbital electron populations 1.22040 0.94591 1.02366 1.01591 1.20518 0.95742 0.95179 0.94585 1.21874 1.00905 0.95328 1.01623 1.21932 1.01008 1.00825 0.96484 1.22110 1.00384 0.93578 0.94595 0.90412 1.22545 1.01240 0.97576 0.94613 1.22506 1.00816 0.95509 0.97405 1.22808 0.99399 0.99325 0.95894 1.21491 0.87499 0.86516 0.98798 0.88692 1.45315 1.14779 1.11391 1.68646 1.16098 0.84687 0.80515 0.78926 1.90875 1.25771 1.77914 1.53245 1.45542 1.12834 1.13753 1.67250 1.21557 1.00889 0.78017 0.97734 1.19324 0.90724 0.94666 0.97765 1.21102 0.97587 0.95955 1.41134 0.92181 1.24998 0.95137 0.98958 0.95266 1.69971 1.01896 1.35499 1.46028 0.86461 0.78349 0.84222 0.78564 1.19560 1.20959 1.20963 0.92215 0.92052 0.92777 0.92772 0.92772 0.92551 0.91960 0.92743 0.92824 0.90726 0.91753 0.91781 0.91638 0.91161 0.91134 0.77552 0.77514 0.92895 0.92892 0.96019 0.96010 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 7.93 37.16 0.29 -0.92 16 2 C -0.06 -0.50 0.53 -154.51 -0.08 -0.58 16 3 C -0.14 -0.99 8.26 37.16 0.31 -0.68 16 4 C -0.15 -1.42 8.23 37.16 0.31 -1.12 16 5 C -0.09 -0.76 2.06 -89.50 -0.18 -0.94 16 6 H 0.08 0.67 7.62 -51.93 -0.40 0.27 16 7 C -0.12 -0.91 5.10 -25.07 -0.13 -1.04 16 8 C -0.12 -1.06 6.91 -24.74 -0.17 -1.23 16 9 C -0.14 -1.48 6.54 -25.07 -0.16 -1.64 16 10 C 0.16 1.86 1.81 -66.81 -0.12 1.74 16 11 H 0.10 1.30 4.41 -51.93 -0.23 1.07 16 12 N -0.75 -9.62 5.04 -57.59 -0.29 -9.91 16 13 C 0.70 12.37 8.56 -86.91 -0.74 11.62 16 14 O -0.60 -12.99 16.00 5.29 0.08 -12.91 16 15 N -0.74 -13.37 5.56 -65.23 -0.36 -13.73 16 16 C 0.14 3.09 5.61 -4.05 -0.02 3.07 16 17 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 18 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 19 H 0.06 1.66 7.74 -52.48 -0.41 1.26 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 22 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H 0.06 0.43 6.01 -51.93 -0.31 0.12 16 27 H 0.06 0.58 6.39 -51.93 -0.33 0.25 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.36 7.18 -51.93 -0.37 -0.01 16 32 H 0.06 0.75 6.56 -51.93 -0.34 0.41 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.52 5.50 -51.93 -0.29 0.24 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 41 H 0.39 4.08 8.33 -40.82 -0.34 3.74 16 42 H 0.39 6.11 8.49 -40.82 -0.35 5.77 16 43 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 362.38 15.07 5.46 5.46 Total: -1.00 -31.71 362.38 -9.06 -40.77 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -8.41 Total: 4.25 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -1.26 Total: -4.88 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.08 Total: -49.24 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.08 Total: -12.91 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.71 -9.06 -40.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413440578.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.977 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds