Wall clock time and date at job start Tue Mar 31 2020 05:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46502 * 119.99855 * 2 1 4 4 C 1.34780 * 120.00302 * 179.97438 * 2 1 3 5 5 O 1.21285 * 119.99712 * 0.02562 * 4 2 1 6 6 C 1.50691 * 120.00143 * 180.02562 * 4 2 1 7 7 H 1.09003 * 110.87628 * 62.39616 * 6 4 2 8 8 C 1.55140 * 110.99409 * 298.55031 * 6 4 2 9 9 C 1.54312 * 103.02067 * 206.25525 * 8 6 4 10 10 N 1.47440 * 107.23767 * 22.28245 * 9 8 6 11 11 C 1.46900 * 111.00146 * 123.25602 * 10 9 8 12 12 C 1.52994 * 109.46987 * 78.16921 * 11 10 9 13 13 C 1.53005 * 109.46913 * 294.22754 * 12 11 10 14 14 C 1.53007 * 109.46852 * 174.23006 * 12 11 10 15 15 C 1.52998 * 109.47260 * 54.23028 * 12 11 10 16 16 C 1.50701 * 109.46844 * 179.97438 * 15 12 11 17 17 H 1.08002 * 120.00375 * 0.02562 * 16 15 12 18 18 C 1.37878 * 119.99679 * 179.72173 * 16 15 12 19 19 N 1.31517 * 120.00190 * 0.28034 * 18 16 15 20 20 Si 1.86806 * 119.99918 * 180.27535 * 18 16 15 21 21 H 1.48504 * 109.47009 * 90.00380 * 20 18 16 22 22 H 1.48503 * 109.47064 * 210.00358 * 20 18 16 23 23 H 1.48494 * 109.46958 * 330.00226 * 20 18 16 24 24 C 1.47849 * 108.56244 * 0.99296 * 10 9 8 25 25 H 1.09000 * 109.46989 * 270.00569 * 1 2 3 26 26 H 1.09000 * 109.46805 * 30.00097 * 1 2 3 27 27 H 1.08993 * 109.46771 * 150.00538 * 1 2 3 28 28 H 1.08994 * 109.46691 * 269.99692 * 3 2 1 29 29 H 1.08996 * 109.47344 * 29.99440 * 3 2 1 30 30 H 1.08998 * 109.47432 * 149.99825 * 3 2 1 31 31 H 1.08998 * 110.70285 * 87.86941 * 8 6 4 32 32 H 1.08998 * 110.85685 * 324.70963 * 8 6 4 33 33 H 1.09004 * 109.88839 * 262.87451 * 9 8 6 34 34 H 1.09009 * 110.02406 * 141.76558 * 9 8 6 35 35 H 1.09005 * 109.47193 * 318.16661 * 11 10 9 36 36 H 1.09001 * 109.47171 * 198.16820 * 11 10 9 37 37 H 1.09007 * 109.46506 * 188.10066 * 13 12 11 38 38 H 1.08997 * 109.46807 * 308.09713 * 13 12 11 39 39 H 1.08991 * 109.46810 * 68.10173 * 13 12 11 40 40 H 1.08994 * 109.47305 * 304.68499 * 14 12 11 41 41 H 1.09001 * 109.47224 * 64.69137 * 14 12 11 42 42 H 1.08999 * 109.47018 * 184.68724 * 14 12 11 43 43 H 1.08999 * 109.47215 * 60.00216 * 15 12 11 44 44 H 1.09001 * 109.46813 * 299.99713 * 15 12 11 45 45 H 0.96997 * 120.00007 * 179.97438 * 19 18 16 46 46 H 1.08999 * 110.37731 * 94.73619 * 24 10 9 47 47 H 1.09008 * 110.37126 * 217.07516 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1390 -1.1672 0.0005 5 8 1.5326 -2.2176 0.0005 6 6 3.6459 -1.1672 0.0011 7 1 4.0340 -0.6950 0.9037 8 6 4.2022 -0.4752 -1.2711 9 6 5.5857 -1.1351 -1.4491 10 7 5.5476 -2.4276 -0.7407 11 6 5.8779 -3.5350 -1.6476 12 6 7.3924 -3.5881 -1.8573 13 6 7.8490 -2.3299 -2.5986 14 6 7.7498 -4.8251 -2.6839 15 6 8.0930 -3.6624 -0.4992 16 6 9.5848 -3.7153 -0.7058 17 1 9.9926 -3.6973 -1.7057 18 6 10.4295 -3.7805 0.3820 19 7 9.9331 -3.8020 1.5997 20 14 12.2791 -3.8383 0.1262 21 1 12.8191 -2.4551 0.1035 22 1 12.9089 -4.5974 1.2364 23 1 12.5795 -4.5083 -1.1645 24 6 4.2009 -2.6048 -0.1567 25 1 -0.3633 0.0001 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3632 -0.8900 -0.5137 28 1 2.3792 1.5833 -1.0276 29 1 1.6084 2.0284 0.5137 30 1 3.1499 1.1385 0.5138 31 1 4.3048 0.5983 -1.1123 32 1 3.5654 -0.6768 -2.1324 33 1 6.3584 -0.4986 -1.0179 34 1 5.7880 -1.2983 -2.5077 35 1 5.3835 -3.3791 -2.6066 36 1 5.5382 -4.4748 -1.2123 37 1 8.8986 -2.4318 -2.8748 38 1 7.2475 -2.1999 -3.4982 39 1 7.7264 -1.4620 -1.9508 40 1 7.3514 -5.7151 -2.1969 41 1 7.3190 -4.7327 -3.6809 42 1 8.8337 -4.9085 -2.7629 43 1 7.7677 -4.5588 0.0289 44 1 7.8384 -2.7812 0.0897 45 1 10.5274 -3.8482 2.3649 46 1 3.5686 -3.1840 -0.8296 47 1 4.2701 -3.0936 0.8152 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414503410.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:23 Heat of formation + Delta-G solvation = -33.250295 kcal Electronic energy + Delta-G solvation = -23528.930907 eV Core-core repulsion = 20325.654951 eV Total energy + Delta-G solvation = -3203.275956 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.44981 -38.59518 -35.94611 -35.75843 -32.42427 -31.22641 -29.20947 -28.23928 -27.00114 -26.53648 -26.18885 -24.96201 -22.70742 -21.87632 -20.60237 -19.21912 -17.86120 -17.25908 -16.26751 -16.14235 -15.96814 -15.39756 -14.80696 -14.47636 -13.80807 -13.65209 -13.46342 -13.25322 -13.03953 -12.86591 -12.81460 -12.52420 -12.46413 -12.23370 -11.99948 -11.88386 -11.61661 -11.40375 -11.11065 -10.90298 -10.80284 -10.66101 -10.59721 -10.32862 -10.16684 -9.97377 -9.81424 -9.52216 -8.93996 -8.88608 -8.65718 -8.18107 -7.72486 -5.82294 -3.81703 2.49354 2.78078 3.39346 3.46055 3.48539 4.15217 4.49947 4.58414 4.68977 4.73544 4.79317 4.96731 4.99653 5.20609 5.30478 5.37053 5.41291 5.51820 5.52689 5.54562 5.65986 5.73461 5.75551 5.92411 6.05258 6.10128 6.17438 6.19937 6.23864 6.34508 6.36676 6.47901 6.56416 6.80048 6.82532 7.08719 7.15333 7.26696 7.39264 7.45919 7.65878 7.93716 8.01321 8.14913 8.31147 8.65037 9.26149 9.79566 11.28752 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027545 B = 0.003704 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.290291 B = 7557.374034 C = 7798.834479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.625 5.625 3 C 0.077 3.923 4 C 0.525 3.475 5 O -0.537 6.537 6 C -0.119 4.119 7 H 0.112 0.888 8 C -0.133 4.133 9 C 0.042 3.958 10 N -0.511 5.511 11 C 0.065 3.935 12 C -0.058 4.058 13 C -0.129 4.129 14 C -0.129 4.129 15 C 0.047 3.953 16 C -0.508 4.508 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.882 3.118 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.276 1.276 24 C 0.065 3.935 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.021 0.979 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.023 0.977 39 H 0.058 0.942 40 H 0.042 0.958 41 H 0.027 0.973 42 H 0.067 0.933 43 H 0.008 0.992 44 H 0.035 0.965 45 H 0.256 0.744 46 H 0.052 0.948 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.366 11.100 -5.413 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.359 5.359 3 C -0.066 4.066 4 C 0.313 3.687 5 O -0.413 6.413 6 C -0.141 4.141 7 H 0.130 0.870 8 C -0.172 4.172 9 C -0.086 4.086 10 N -0.234 5.234 11 C -0.062 4.062 12 C -0.059 4.059 13 C -0.186 4.186 14 C -0.187 4.187 15 C 0.010 3.990 16 C -0.547 4.547 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.710 3.290 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.201 1.201 24 C -0.063 4.063 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.040 0.960 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.042 0.958 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.046 0.954 42 H 0.086 0.914 43 H 0.026 0.974 44 H 0.053 0.947 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.268 10.513 -4.842 19.966 hybrid contribution 0.449 0.105 -0.621 0.774 sum -15.819 10.618 -5.464 19.820 Atomic orbital electron populations 1.21617 0.79400 1.02969 1.01772 1.47753 1.06967 1.06588 1.74628 1.21939 0.97609 0.85033 1.02048 1.20626 0.90024 0.82965 0.75106 1.90694 1.70378 1.31043 1.49223 1.22454 0.90541 1.00028 1.01086 0.87010 1.22951 0.97907 1.00389 0.95962 1.23128 0.95247 0.91685 0.98510 1.63562 1.25025 1.01764 1.33079 1.22442 0.97749 0.93362 0.92687 1.20609 0.91810 0.94047 0.99403 1.21963 1.00572 0.98517 0.97526 1.21770 1.02442 0.97470 0.97017 1.18990 0.93072 0.97756 0.89230 1.21372 0.92170 1.49052 0.92084 0.92815 1.24983 0.97987 0.96060 0.95445 1.69984 1.34312 1.51563 0.97614 0.86769 0.86845 0.77821 0.77550 1.20963 1.21512 1.20137 1.22844 0.88789 0.93533 1.01132 0.92811 0.91375 0.90613 0.92317 0.91150 0.90328 0.90194 0.91626 0.89979 0.91792 0.96049 0.91654 0.92607 0.95833 0.92338 0.93838 0.95415 0.91412 0.97409 0.94693 0.93400 0.92928 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.70 10.44 59.85 0.62 1.32 16 2 N -0.62 -6.15 3.27 -189.52 -0.62 -6.77 16 3 C 0.08 0.50 8.90 59.85 0.53 1.03 16 4 C 0.52 6.89 7.08 -10.99 -0.08 6.82 16 5 O -0.54 -9.05 15.38 5.55 0.09 -8.96 16 6 C -0.12 -1.50 2.45 -89.64 -0.22 -1.71 16 7 H 0.11 1.31 7.57 -51.93 -0.39 0.91 16 8 C -0.13 -1.47 5.38 -24.91 -0.13 -1.61 16 9 C 0.04 0.60 4.88 -2.84 -0.01 0.58 16 10 N -0.51 -8.75 4.09 -231.25 -0.95 -9.70 16 11 C 0.07 1.18 3.90 -3.83 -0.01 1.16 16 12 C -0.06 -1.18 0.61 -154.51 -0.09 -1.27 16 13 C -0.13 -2.41 6.59 37.16 0.25 -2.16 16 14 C -0.13 -2.50 8.30 37.16 0.31 -2.19 16 15 C 0.05 1.19 3.81 -27.88 -0.11 1.08 16 16 C -0.51 -14.07 7.68 -34.44 -0.26 -14.34 16 17 H 0.05 1.45 5.72 -52.49 -0.30 1.15 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 20 Si 0.88 21.85 29.54 -169.99 -5.02 16.83 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.07 1.02 5.68 -2.30 -0.01 1.01 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 27 H 0.08 0.74 7.42 -51.93 -0.39 0.35 16 28 H 0.06 0.33 7.68 -51.93 -0.40 -0.07 16 29 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 30 H 0.08 0.50 5.95 -51.93 -0.31 0.19 16 31 H 0.08 0.67 6.39 -51.93 -0.33 0.34 16 32 H 0.06 0.73 8.04 -51.93 -0.42 0.32 16 33 H 0.08 1.21 7.38 -51.93 -0.38 0.83 16 34 H 0.06 0.90 5.42 -51.92 -0.28 0.62 16 35 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 36 H 0.06 1.21 7.95 -51.93 -0.41 0.80 16 37 H 0.05 1.11 6.90 -51.93 -0.36 0.76 16 38 H 0.02 0.37 7.42 -51.93 -0.39 -0.01 16 39 H 0.06 1.09 5.57 -51.93 -0.29 0.80 16 40 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 1.41 6.48 -51.93 -0.34 1.08 16 43 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.03 0.97 7.45 -51.93 -0.39 0.58 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.05 0.86 7.18 -51.93 -0.37 0.49 16 47 H 0.08 1.40 8.14 -51.92 -0.42 0.98 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -32.89 351.39 -8.02 -40.91 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -8.23 Total: -2.39 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 0.68 Total: -8.79 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: -0.83 Total: -42.90 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.89 -8.02 -40.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414503410.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.660 kcal (2) G-P(sol) polarization free energy of solvation -32.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds