Wall clock time and date at job start Tue Mar 31 2020 05:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 120.00167 * 2 1 4 4 C 1.34779 * 119.99764 * 180.02562 * 2 1 3 5 5 O 1.21280 * 120.00281 * 4.27443 * 4 2 1 6 6 C 1.50699 * 119.99884 * 184.27203 * 4 2 1 7 7 H 1.09004 * 110.63081 * 320.08665 * 6 4 2 8 8 C 1.55144 * 110.70441 * 83.18932 * 6 4 2 9 9 C 1.54912 * 101.64980 * 154.03389 * 8 6 4 10 10 N 1.47836 * 104.79786 * 322.93132 * 9 8 6 11 11 C 1.46899 * 111.00127 * 146.36198 * 10 9 8 12 12 C 1.53007 * 109.47250 * 77.51212 * 11 10 9 13 13 C 1.52998 * 109.47407 * 174.26270 * 12 11 10 14 14 C 1.53006 * 109.46701 * 294.26543 * 12 11 10 15 15 C 1.53004 * 109.46790 * 54.25685 * 12 11 10 16 16 C 1.50696 * 109.46712 * 180.02562 * 15 12 11 17 17 H 1.07999 * 120.00265 * 0.02562 * 16 15 12 18 18 C 1.37887 * 120.00088 * 180.02562 * 16 15 12 19 19 N 1.31518 * 119.99329 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00216 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47270 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46790 * 120.00235 * 20 18 16 23 23 H 1.48500 * 109.47313 * 239.99962 * 20 18 16 24 24 C 1.47440 * 108.56966 * 24.09400 * 10 9 8 25 25 H 1.08997 * 109.47513 * 269.99820 * 1 2 3 26 26 H 1.09006 * 109.47176 * 29.99793 * 1 2 3 27 27 H 1.09005 * 109.47395 * 149.99655 * 1 2 3 28 28 H 1.08993 * 109.47259 * 274.20323 * 3 2 1 29 29 H 1.09001 * 109.46654 * 34.20962 * 3 2 1 30 30 H 1.09004 * 109.46485 * 154.20196 * 3 2 1 31 31 H 1.08993 * 110.99110 * 272.12529 * 8 6 4 32 32 H 1.09000 * 110.98922 * 35.94519 * 8 6 4 33 33 H 1.09000 * 110.37193 * 81.76198 * 9 8 6 34 34 H 1.08997 * 110.36913 * 204.09858 * 9 8 6 35 35 H 1.08997 * 109.47978 * 197.50836 * 11 10 9 36 36 H 1.08998 * 109.47289 * 317.51628 * 11 10 9 37 37 H 1.08994 * 109.46893 * 64.33778 * 13 12 11 38 38 H 1.08998 * 109.46664 * 184.33353 * 13 12 11 39 39 H 1.08997 * 109.46933 * 304.33262 * 13 12 11 40 40 H 1.08999 * 109.47225 * 69.22065 * 14 12 11 41 41 H 1.09003 * 109.46740 * 189.21719 * 14 12 11 42 42 H 1.08998 * 109.47165 * 309.21290 * 14 12 11 43 43 H 1.08988 * 109.47546 * 300.00406 * 15 12 11 44 44 H 1.09005 * 109.46773 * 60.00847 * 15 12 11 45 45 H 0.96997 * 119.99597 * 180.02562 * 19 18 16 46 46 H 1.08995 * 109.89227 * 239.60674 * 24 10 9 47 47 H 1.09009 * 110.02482 * 118.49078 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5349 -2.2161 -0.0793 6 6 3.6426 -1.1691 0.0967 7 1 4.0672 -0.3630 -0.5018 8 6 4.0968 -1.0522 1.5755 9 6 5.4884 -1.7314 1.5301 10 7 5.3322 -2.8486 0.5746 11 6 6.5744 -3.0777 -0.1752 12 6 7.5722 -3.8294 0.7083 13 6 8.8091 -4.1937 -0.1152 14 6 7.9850 -2.9393 1.8824 15 6 6.9200 -5.1066 1.2414 16 6 7.9025 -5.8466 2.1121 17 1 8.8929 -5.4458 2.2698 18 6 7.5370 -7.0354 2.7074 19 7 6.3311 -7.5237 2.5148 20 14 8.7551 -7.9530 3.7860 21 1 10.0333 -7.1992 3.8412 22 1 8.1999 -8.0861 5.1569 23 1 9.0002 -9.3030 3.2181 24 6 4.2157 -2.5351 -0.3359 25 1 -0.3634 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5139 28 1 2.3139 1.6210 -1.0248 29 1 1.6431 2.0083 0.5778 30 1 3.1804 1.1206 0.4473 31 1 4.1816 -0.0080 1.8765 32 1 3.4195 -1.5936 2.2360 33 1 6.2418 -1.0293 1.1731 34 1 5.7581 -2.1100 2.5159 35 1 6.3584 -3.6702 -1.0642 36 1 7.0017 -2.1199 -0.4719 37 1 9.3171 -3.2823 -0.4303 38 1 9.4856 -4.7952 0.4920 39 1 8.5059 -4.7631 -0.9937 40 1 7.1393 -2.8142 2.5584 41 1 8.8124 -3.4050 2.4179 42 1 8.2977 -1.9648 1.5072 43 1 6.0388 -4.8471 1.8280 44 1 6.6258 -5.7407 0.4049 45 1 6.0739 -8.3598 2.9339 46 1 3.4455 -3.3023 -0.2562 47 1 4.5765 -2.4774 -1.3629 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414503411.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:27 Heat of formation + Delta-G solvation = -30.041053 kcal Electronic energy + Delta-G solvation = -23510.390360 eV Core-core repulsion = 20307.253567 eV Total energy + Delta-G solvation = -3203.136793 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.42275 -38.57926 -35.95808 -35.67401 -32.39610 -31.19613 -29.31916 -28.19912 -26.98479 -26.49857 -26.19239 -24.95449 -22.69226 -21.77377 -20.74280 -19.03751 -17.98531 -17.44205 -16.36854 -16.02442 -15.81195 -15.32492 -14.75576 -14.47446 -13.98536 -13.64743 -13.42640 -13.30467 -12.96408 -12.82159 -12.80291 -12.62768 -12.33858 -12.07179 -11.97734 -11.87570 -11.65768 -11.31155 -11.15952 -10.97815 -10.85262 -10.66129 -10.62082 -10.27173 -10.13271 -9.94632 -9.78039 -9.48518 -8.91261 -8.85976 -8.62681 -8.15920 -7.69776 -5.79505 -3.79315 2.52010 2.80470 3.40391 3.48121 3.50856 4.22730 4.45886 4.60365 4.61287 4.72624 4.84310 4.97705 4.98754 5.16110 5.30648 5.33064 5.42137 5.47775 5.55100 5.59247 5.62713 5.71370 5.78197 5.88280 6.00627 6.11750 6.12854 6.19536 6.31688 6.33756 6.46494 6.47357 6.57127 6.80086 6.85406 7.11926 7.16234 7.29987 7.39619 7.48037 7.67074 7.96160 8.06789 8.17129 8.34388 8.67147 9.29020 9.81947 11.31482 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025383 B = 0.003838 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.840898 B = 7293.381858 C = 7798.097388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.627 5.627 3 C 0.077 3.923 4 C 0.524 3.476 5 O -0.527 6.527 6 C -0.132 4.132 7 H 0.093 0.907 8 C -0.116 4.116 9 C 0.045 3.955 10 N -0.507 5.507 11 C 0.065 3.935 12 C -0.058 4.058 13 C -0.129 4.129 14 C -0.132 4.132 15 C 0.045 3.955 16 C -0.509 4.509 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.893 5.893 20 Si 0.881 3.119 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.287 1.287 24 C 0.056 3.944 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.020 0.980 37 H 0.026 0.974 38 H 0.067 0.933 39 H 0.042 0.958 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.022 0.978 43 H 0.035 0.965 44 H 0.008 0.992 45 H 0.256 0.744 46 H 0.097 0.903 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.794 20.630 -5.682 22.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.363 5.363 3 C -0.067 4.067 4 C 0.312 3.688 5 O -0.402 6.402 6 C -0.155 4.155 7 H 0.111 0.889 8 C -0.154 4.154 9 C -0.083 4.083 10 N -0.231 5.231 11 C -0.063 4.063 12 C -0.059 4.059 13 C -0.186 4.186 14 C -0.189 4.189 15 C 0.008 3.992 16 C -0.547 4.547 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.710 3.290 21 H -0.200 1.200 22 H -0.213 1.213 23 H -0.213 1.213 24 C -0.072 4.072 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.039 0.961 37 H 0.046 0.954 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.041 0.959 43 H 0.053 0.947 44 H 0.026 0.974 45 H 0.066 0.934 46 H 0.115 0.885 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.337 19.450 -5.423 21.483 hybrid contribution 0.797 0.318 0.101 0.864 sum -6.540 19.768 -5.322 21.491 Atomic orbital electron populations 1.21617 0.79342 1.03053 1.01802 1.47759 1.07017 1.06456 1.75028 1.21850 0.97696 0.85287 1.01825 1.20548 0.89956 0.82988 0.75287 1.90713 1.70078 1.30996 1.48387 1.22586 0.91797 1.01310 0.99773 0.88901 1.22760 0.98304 1.00833 0.93519 1.23382 0.94490 0.91263 0.99144 1.63559 1.04530 1.39228 1.15750 1.22516 0.89857 0.97707 0.96245 1.20604 0.93384 0.97983 0.93897 1.21762 0.98164 0.99104 0.99597 1.22026 1.01720 0.96471 0.98652 1.19005 0.95746 0.88869 0.95549 1.21399 0.99185 1.05621 1.28510 0.92771 1.24997 0.94937 0.97688 0.96903 1.70004 1.18375 1.20350 1.44571 0.86713 0.81705 0.79933 0.80658 1.19991 1.21306 1.21340 1.22879 0.95047 0.94202 0.95077 0.92803 0.91465 0.90407 0.92617 0.91166 0.90414 0.90763 0.90067 0.93678 0.88711 0.91676 0.96144 0.95441 0.91430 0.93865 0.92065 0.92661 0.95864 0.94653 0.97401 0.93430 0.88458 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.72 10.49 59.84 0.63 1.35 16 2 N -0.63 -6.29 3.27 -189.52 -0.62 -6.91 16 3 C 0.08 0.48 10.11 59.85 0.61 1.08 16 4 C 0.52 7.08 6.91 -10.98 -0.08 7.00 16 5 O -0.53 -9.36 15.03 5.56 0.08 -9.27 16 6 C -0.13 -1.62 2.30 -89.95 -0.21 -1.83 16 7 H 0.09 0.91 7.01 -51.93 -0.36 0.54 16 8 C -0.12 -1.39 6.26 -24.59 -0.15 -1.55 16 9 C 0.04 0.65 4.94 -2.30 -0.01 0.63 16 10 N -0.51 -8.86 4.09 -231.25 -0.95 -9.81 16 11 C 0.06 1.14 3.91 -3.82 -0.01 1.12 16 12 C -0.06 -1.18 0.61 -154.50 -0.09 -1.27 16 13 C -0.13 -2.46 8.29 37.16 0.31 -2.15 16 14 C -0.13 -2.47 6.80 37.16 0.25 -2.22 16 15 C 0.05 1.18 3.81 -27.88 -0.11 1.07 16 16 C -0.51 -14.25 7.69 -34.44 -0.26 -14.52 16 17 H 0.05 1.48 5.73 -52.49 -0.30 1.18 16 18 C 0.05 1.60 5.46 -17.81 -0.10 1.51 16 19 N -0.89 -27.66 13.29 55.43 0.74 -26.92 16 20 Si 0.88 22.12 29.54 -169.99 -5.02 17.10 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 C 0.06 0.88 6.35 -2.84 -0.02 0.86 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 27 H 0.08 0.80 7.37 -51.93 -0.38 0.42 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.32 8.10 -51.93 -0.42 -0.11 16 30 H 0.08 0.46 5.22 -51.93 -0.27 0.18 16 31 H 0.07 0.66 7.26 -51.93 -0.38 0.28 16 32 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 33 H 0.05 0.59 7.05 -51.93 -0.37 0.23 16 34 H 0.09 1.51 5.89 -51.93 -0.31 1.21 16 35 H 0.06 1.17 7.78 -51.93 -0.40 0.77 16 36 H 0.02 0.32 7.58 -51.93 -0.39 -0.07 16 37 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 1.40 6.49 -51.93 -0.34 1.07 16 39 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 1.16 5.00 -51.93 -0.26 0.90 16 41 H 0.05 1.11 6.93 -51.93 -0.36 0.75 16 42 H 0.02 0.36 7.83 -51.93 -0.41 -0.04 16 43 H 0.04 1.00 7.45 -51.94 -0.39 0.62 16 44 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.10 1.81 6.72 -51.93 -0.35 1.46 16 47 H 0.05 0.75 7.43 -51.92 -0.39 0.36 16 LS Contribution 352.42 15.07 5.31 5.31 Total: -1.00 -33.72 352.42 -7.86 -41.59 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -8.15 Total: -2.18 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 0.75 Total: -8.90 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: -0.83 Total: -43.64 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.08 Total: -9.27 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.72 -7.86 -41.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414503411.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.545 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds