Wall clock time and date at job start Tue Mar 31 2020 06:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34770 * 120.00264 * 2 1 4 4 O 1.21280 * 120.00313 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00096 * 359.97438 * 3 2 1 6 6 C 1.52992 * 109.47325 * 179.97438 * 5 3 2 7 7 C 1.50703 * 109.47325 * 179.97438 * 6 5 3 8 8 H 1.08000 * 119.99449 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00208 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00156 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99756 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47156 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47082 * 120.00486 * 11 9 7 14 14 H 1.48504 * 109.46812 * 240.00186 * 11 9 7 15 15 C 1.46507 * 119.99980 * 180.02562 * 2 1 3 16 16 C 1.52996 * 109.46842 * 249.31757 * 15 2 1 17 17 C 1.52999 * 109.47136 * 129.31667 * 15 2 1 18 18 C 1.53004 * 109.47004 * 9.31376 * 15 2 1 19 19 N 1.46897 * 109.47015 * 160.88986 * 18 15 2 20 20 C 1.48536 * 110.99961 * 58.32355 * 19 18 15 21 21 C 1.54935 * 103.22807 * 159.71908 * 20 19 18 22 22 C 1.54595 * 102.91940 * 322.58637 * 21 20 19 23 23 C 1.47896 * 110.99861 * 175.71740 * 19 18 15 24 24 H 1.08996 * 109.47405 * 264.65618 * 1 2 3 25 25 H 1.09000 * 109.46998 * 24.65307 * 1 2 3 26 26 H 1.08997 * 109.47355 * 144.65217 * 1 2 3 27 27 H 1.08995 * 109.47018 * 300.00026 * 5 3 2 28 28 H 1.09001 * 109.46680 * 59.99583 * 5 3 2 29 29 H 1.09004 * 109.47294 * 299.99843 * 6 5 3 30 30 H 1.09001 * 109.47525 * 60.00170 * 6 5 3 31 31 H 0.96994 * 120.00102 * 179.97438 * 10 9 7 32 32 H 1.09001 * 109.46706 * 190.51845 * 16 15 2 33 33 H 1.09008 * 109.47211 * 310.51005 * 16 15 2 34 34 H 1.08998 * 109.47839 * 70.51903 * 16 15 2 35 35 H 1.09005 * 109.47066 * 307.35599 * 17 15 2 36 36 H 1.08997 * 109.47260 * 67.35301 * 17 15 2 37 37 H 1.09003 * 109.47141 * 187.36066 * 17 15 2 38 38 H 1.08997 * 109.47100 * 280.89242 * 18 15 2 39 39 H 1.09002 * 109.46960 * 40.89036 * 18 15 2 40 40 H 1.09006 * 110.66706 * 278.15706 * 20 19 18 41 41 H 1.08994 * 110.66632 * 41.28195 * 20 19 18 42 42 H 1.08997 * 110.72507 * 204.22474 * 21 20 19 43 43 H 1.09000 * 110.72078 * 80.94332 * 21 20 19 44 44 H 1.08997 * 110.30614 * 263.03977 * 22 21 20 45 45 H 1.09004 * 110.38940 * 140.91852 * 22 21 20 46 46 H 1.08997 * 109.92077 * 333.51259 * 23 19 18 47 47 H 1.09000 * 109.91694 * 94.60833 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3797 3.6351 0.0002 7 6 1.6262 4.9403 -0.0010 8 1 0.5462 4.9403 -0.0018 9 6 2.3156 6.1343 -0.0001 10 7 3.6308 6.1343 0.0014 11 14 1.3816 7.7521 -0.0009 12 1 -0.0784 7.4807 -0.0019 13 1 1.7391 8.5306 1.2121 14 1 1.7417 8.5309 -1.2129 15 6 2.1975 -1.2688 -0.0006 16 6 2.8937 -1.4563 1.3489 17 6 3.2440 -1.2530 -1.1165 18 6 1.2197 -2.4221 -0.2345 19 7 1.9600 -3.6076 -0.6866 20 6 2.9875 -4.0054 0.3095 21 6 3.2715 -5.4864 -0.0463 22 6 1.8753 -6.0214 -0.4391 23 6 1.0603 -4.7732 -0.8253 24 1 -0.3634 -0.0957 1.0231 25 1 -0.3633 0.9340 -0.4287 26 1 -0.3634 -0.8382 -0.5945 27 1 0.7592 2.5298 -0.8908 28 1 0.7584 2.5302 0.8891 29 1 3.0056 3.5774 0.8907 30 1 3.0070 3.5774 -0.8893 31 1 4.1157 6.9743 0.0017 32 1 3.5843 -2.2973 1.2876 33 1 3.4454 -0.5509 1.6020 34 1 2.1475 -1.6542 2.1184 35 1 2.7653 -0.9899 -2.0599 36 1 4.0138 -0.5177 -0.8824 37 1 3.6984 -2.2401 -1.2026 38 1 0.6992 -2.6514 0.6953 39 1 0.4942 -2.1346 -0.9956 40 1 3.8884 -3.4025 0.1947 41 1 2.5939 -3.9218 1.3225 42 1 3.6609 -6.0231 0.8188 43 1 3.9617 -5.5555 -0.8871 44 1 1.4126 -6.5284 0.4076 45 1 1.9538 -6.6999 -1.2886 46 1 0.2068 -4.6653 -0.1560 47 1 0.7155 -4.8556 -1.8560 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416106569.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:26 Heat of formation + Delta-G solvation = -18.988784 kcal Electronic energy + Delta-G solvation = -23425.328228 eV Core-core repulsion = 20222.670697 eV Total energy + Delta-G solvation = -3202.657531 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.44475 -38.90068 -36.14571 -33.67168 -33.11485 -31.37963 -30.54880 -28.94656 -27.14529 -27.01640 -25.53616 -25.38684 -22.17487 -21.26592 -21.06253 -19.82422 -17.99751 -16.76122 -16.62852 -16.11495 -15.76343 -15.44487 -15.26420 -14.47240 -14.32609 -14.07426 -13.64314 -13.35407 -13.12862 -12.92526 -12.68029 -12.50381 -12.23403 -12.17998 -12.06691 -11.80750 -11.67019 -11.39458 -11.32092 -11.03910 -10.98960 -10.89178 -10.81734 -10.74129 -10.62226 -10.54751 -9.90934 -9.55126 -9.07129 -8.74067 -8.63562 -8.32562 -8.25914 -5.93664 -3.97727 3.20701 3.31249 3.33958 3.41036 3.44369 3.86576 4.35177 4.39919 4.49104 4.63398 4.74603 4.92267 5.00236 5.13632 5.20061 5.25174 5.34366 5.39938 5.41334 5.44501 5.50611 5.54665 5.57442 5.63525 5.69128 5.78421 5.81289 5.82047 5.90303 6.00659 6.10325 6.24985 6.27304 6.29394 6.47024 6.57545 6.72681 6.78501 6.93481 7.05562 7.77802 7.85939 7.90696 8.10597 8.42322 8.86026 9.11313 9.65646 11.17347 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046545 B = 0.003143 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.428598 B = 8906.202308 C = 9235.313474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.622 5.622 3 C 0.514 3.486 4 O -0.526 6.526 5 C -0.128 4.128 6 C 0.038 3.962 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.057 3.943 10 N -0.890 5.890 11 Si 0.892 3.108 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.178 3.822 16 C -0.175 4.175 17 C -0.156 4.156 18 C 0.044 3.956 19 N -0.508 5.508 20 C 0.023 3.977 21 C -0.127 4.127 22 C -0.130 4.130 23 C 0.035 3.965 24 H 0.050 0.950 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.260 0.740 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.039 0.961 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.049 0.951 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.043 0.957 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.451 -24.592 0.307 25.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.359 5.359 3 C 0.304 3.696 4 O -0.401 6.401 5 C -0.168 4.168 6 C 0.000 4.000 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.144 4.144 10 N -0.528 5.528 11 Si 0.719 3.281 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.210 1.210 15 C 0.093 3.907 16 C -0.233 4.233 17 C -0.213 4.213 18 C -0.084 4.084 19 N -0.232 5.232 20 C -0.104 4.104 21 C -0.165 4.165 22 C -0.169 4.169 23 C -0.093 4.093 24 H 0.068 0.932 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.104 0.896 40 H 0.113 0.887 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.061 0.939 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.419 -24.317 -0.192 24.914 hybrid contribution -1.169 0.753 0.838 1.624 sum -6.588 -23.564 0.645 24.476 Atomic orbital electron populations 1.21851 0.80566 1.03375 1.01342 1.48180 1.06323 1.05506 1.75909 1.21451 0.88459 0.85184 0.74464 1.90590 1.14281 1.87069 1.48205 1.21887 1.00687 0.92142 1.02090 1.18896 0.93174 0.89370 0.98549 1.21266 0.92925 0.91057 1.51116 0.92639 1.25024 0.94815 0.99195 0.95374 1.70006 1.06036 1.26415 1.50380 0.86551 0.80012 0.83924 0.77570 1.19773 1.21045 1.21019 1.20187 0.91771 0.82505 0.96206 1.22670 1.00908 1.03797 0.95949 1.22228 0.99381 1.03078 0.96636 1.22680 0.95774 0.90650 0.99301 1.64803 1.12219 1.03024 1.43148 1.23727 0.96918 0.95629 0.94103 1.22536 0.97042 0.95372 1.01551 1.22384 0.95861 0.97288 1.01326 1.22859 0.94851 0.89937 1.01619 0.93177 0.90206 0.91504 0.90420 0.90513 0.95898 0.95839 0.93038 0.90653 0.90895 0.93435 0.93224 0.89981 0.91035 0.94240 0.89638 0.88686 0.93269 0.91139 0.90661 0.91689 0.91048 0.93905 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 9.73 59.85 0.58 1.41 16 2 N -0.62 -9.50 2.82 -166.60 -0.47 -9.97 16 3 C 0.51 10.20 7.04 -10.99 -0.08 10.12 16 4 O -0.53 -12.25 12.37 5.56 0.07 -12.19 16 5 C -0.13 -2.68 4.11 -27.89 -0.11 -2.79 16 6 C 0.04 1.03 4.26 -27.89 -0.12 0.91 16 7 C -0.53 -15.08 9.11 -34.44 -0.31 -15.39 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -27.69 13.29 55.43 0.74 -26.95 16 11 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 C 0.18 2.42 0.76 -131.82 -0.10 2.32 16 16 C -0.18 -2.36 7.57 37.16 0.28 -2.08 16 17 C -0.16 -2.34 7.60 37.16 0.28 -2.06 16 18 C 0.04 0.48 3.28 -3.82 -0.01 0.46 16 19 N -0.51 -5.07 4.19 -230.46 -0.97 -6.04 16 20 C 0.02 0.21 4.01 -1.90 -0.01 0.21 16 21 C -0.13 -0.94 7.06 -24.87 -0.18 -1.12 16 22 C -0.13 -0.89 6.93 -25.38 -0.18 -1.07 16 23 C 0.04 0.29 6.70 -2.76 -0.02 0.27 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.92 6.25 -51.93 -0.32 0.60 16 26 H 0.07 0.62 5.47 -51.93 -0.28 0.34 16 27 H 0.08 1.50 7.42 -51.93 -0.39 1.11 16 28 H 0.08 1.48 8.11 -51.93 -0.42 1.06 16 29 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 30 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 32 H 0.07 0.87 4.29 -51.93 -0.22 0.64 16 33 H 0.07 1.22 6.72 -51.92 -0.35 0.87 16 34 H 0.05 0.59 7.91 -51.93 -0.41 0.18 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.50 5.89 -51.93 -0.31 1.19 16 37 H 0.07 0.95 5.21 -51.93 -0.27 0.68 16 38 H 0.04 0.40 7.67 -51.93 -0.40 0.00 16 39 H 0.09 0.90 6.01 -51.93 -0.31 0.58 16 40 H 0.10 0.95 4.89 -51.93 -0.25 0.69 16 41 H 0.05 0.45 7.05 -51.93 -0.37 0.08 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.04 0.33 7.67 -51.93 -0.40 -0.07 16 47 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -33.18 346.94 -8.53 -41.71 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -8.04 Total: -1.42 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -0.07 Total: -7.21 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: -0.70 Total: -42.96 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.07 Total: -12.19 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.18 -8.53 -41.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416106569.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.724 kcal (2) G-P(sol) polarization free energy of solvation -33.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds