Wall clock time and date at job start Tue Mar 31 2020 06:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34770 * 120.00264 * 2 1 4 4 O 1.21280 * 120.00313 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00096 * 359.97438 * 3 2 1 6 6 C 1.52992 * 109.47325 * 179.97438 * 5 3 2 7 7 C 1.50703 * 109.47325 * 179.97438 * 6 5 3 8 8 H 1.08000 * 119.99449 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00208 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00156 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99756 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47156 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47082 * 120.00486 * 11 9 7 14 14 H 1.48504 * 109.46812 * 240.00186 * 11 9 7 15 15 C 1.46507 * 119.99980 * 180.02562 * 2 1 3 16 16 C 1.52996 * 109.46842 * 249.31757 * 15 2 1 17 17 C 1.52999 * 109.47136 * 129.31667 * 15 2 1 18 18 C 1.53004 * 109.47004 * 9.31376 * 15 2 1 19 19 N 1.46897 * 109.47015 * 160.88986 * 18 15 2 20 20 C 1.48536 * 110.99961 * 58.32355 * 19 18 15 21 21 C 1.54935 * 103.22807 * 159.71908 * 20 19 18 22 22 C 1.54595 * 102.91940 * 322.58637 * 21 20 19 23 23 C 1.47896 * 110.99861 * 175.71740 * 19 18 15 24 24 H 1.08996 * 109.47405 * 264.65618 * 1 2 3 25 25 H 1.09000 * 109.46998 * 24.65307 * 1 2 3 26 26 H 1.08997 * 109.47355 * 144.65217 * 1 2 3 27 27 H 1.08995 * 109.47018 * 300.00026 * 5 3 2 28 28 H 1.09001 * 109.46680 * 59.99583 * 5 3 2 29 29 H 1.09004 * 109.47294 * 299.99843 * 6 5 3 30 30 H 1.09001 * 109.47525 * 60.00170 * 6 5 3 31 31 H 0.96994 * 120.00102 * 179.97438 * 10 9 7 32 32 H 1.09001 * 109.46706 * 190.51845 * 16 15 2 33 33 H 1.09008 * 109.47211 * 310.51005 * 16 15 2 34 34 H 1.08998 * 109.47839 * 70.51903 * 16 15 2 35 35 H 1.09005 * 109.47066 * 307.35599 * 17 15 2 36 36 H 1.08997 * 109.47260 * 67.35301 * 17 15 2 37 37 H 1.09003 * 109.47141 * 187.36066 * 17 15 2 38 38 H 1.08997 * 109.47100 * 280.89242 * 18 15 2 39 39 H 1.09002 * 109.46960 * 40.89036 * 18 15 2 40 40 H 1.09006 * 110.66706 * 278.15706 * 20 19 18 41 41 H 1.08994 * 110.66632 * 41.28195 * 20 19 18 42 42 H 1.08997 * 110.72507 * 204.22474 * 21 20 19 43 43 H 1.09000 * 110.72078 * 80.94332 * 21 20 19 44 44 H 1.08997 * 110.30614 * 263.03977 * 22 21 20 45 45 H 1.09004 * 110.38940 * 140.91852 * 22 21 20 46 46 H 1.08997 * 109.92077 * 333.51259 * 23 19 18 47 47 H 1.09000 * 109.91694 * 94.60833 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3797 3.6351 0.0002 7 6 1.6262 4.9403 -0.0010 8 1 0.5462 4.9403 -0.0018 9 6 2.3156 6.1343 -0.0001 10 7 3.6308 6.1343 0.0014 11 14 1.3816 7.7521 -0.0009 12 1 -0.0784 7.4807 -0.0019 13 1 1.7391 8.5306 1.2121 14 1 1.7417 8.5309 -1.2129 15 6 2.1975 -1.2688 -0.0006 16 6 2.8937 -1.4563 1.3489 17 6 3.2440 -1.2530 -1.1165 18 6 1.2197 -2.4221 -0.2345 19 7 1.9600 -3.6076 -0.6866 20 6 2.9875 -4.0054 0.3095 21 6 3.2715 -5.4864 -0.0463 22 6 1.8753 -6.0214 -0.4391 23 6 1.0603 -4.7732 -0.8253 24 1 -0.3634 -0.0957 1.0231 25 1 -0.3633 0.9340 -0.4287 26 1 -0.3634 -0.8382 -0.5945 27 1 0.7592 2.5298 -0.8908 28 1 0.7584 2.5302 0.8891 29 1 3.0056 3.5774 0.8907 30 1 3.0070 3.5774 -0.8893 31 1 4.1157 6.9743 0.0017 32 1 3.5843 -2.2973 1.2876 33 1 3.4454 -0.5509 1.6020 34 1 2.1475 -1.6542 2.1184 35 1 2.7653 -0.9899 -2.0599 36 1 4.0138 -0.5177 -0.8824 37 1 3.6984 -2.2401 -1.2026 38 1 0.6992 -2.6514 0.6953 39 1 0.4942 -2.1346 -0.9956 40 1 3.8884 -3.4025 0.1947 41 1 2.5939 -3.9218 1.3225 42 1 3.6609 -6.0231 0.8188 43 1 3.9617 -5.5555 -0.8871 44 1 1.4126 -6.5284 0.4076 45 1 1.9538 -6.6999 -1.2886 46 1 0.2068 -4.6653 -0.1560 47 1 0.7155 -4.8556 -1.8560 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416106569.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:26 Heat of formation + Delta-G solvation = -40.801582 kcal Electronic energy + Delta-G solvation = -23426.274102 eV Core-core repulsion = 20222.670697 eV Total energy + Delta-G solvation = -3203.603404 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.61466 -39.94838 -37.37725 -35.61421 -34.49881 -32.78921 -31.89543 -29.67046 -28.34344 -28.21060 -27.35439 -26.34787 -23.98521 -22.08521 -21.71172 -21.18940 -19.44084 -18.60783 -17.57161 -17.35287 -16.92252 -16.63639 -16.58182 -16.32930 -15.50361 -14.97380 -14.69444 -14.55903 -14.53877 -14.18770 -13.94901 -13.64351 -13.62084 -13.37588 -13.17147 -12.94600 -12.89387 -12.73533 -12.54609 -12.43459 -12.26497 -12.17809 -12.06034 -11.89139 -11.81427 -11.55521 -11.48785 -11.37544 -11.26034 -10.58102 -10.29505 -9.56315 -9.35942 -8.18322 -6.32497 1.41362 1.43092 1.56352 1.76111 2.00694 2.42686 3.09194 3.14552 3.51684 3.77763 3.86082 3.91502 4.06264 4.12091 4.18350 4.26141 4.37433 4.45260 4.47546 4.51962 4.56123 4.60345 4.71327 4.74010 4.76711 4.85404 4.89000 4.94680 4.95689 5.00774 5.04994 5.09191 5.13574 5.20605 5.32413 5.32824 5.45328 5.49330 5.63154 5.77712 5.85649 5.94847 6.07361 6.17687 6.49144 6.86405 7.35711 7.38743 8.94650 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046545 B = 0.003143 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.428598 B = 8906.202308 C = 9235.313474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.612 5.612 3 C 0.509 3.491 4 O -0.574 6.574 5 C -0.116 4.116 6 C 0.046 3.954 7 C -0.542 4.542 8 H 0.075 0.925 9 C -0.008 4.008 10 N -0.938 5.938 11 Si 0.974 3.026 12 H -0.252 1.252 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.174 3.826 16 C -0.169 4.169 17 C -0.146 4.146 18 C 0.056 3.944 19 N -0.523 5.523 20 C 0.020 3.980 21 C -0.125 4.125 22 C -0.127 4.127 23 C 0.034 3.966 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.098 0.902 29 H -0.020 1.020 30 H -0.020 1.020 31 H 0.263 0.737 32 H 0.093 0.907 33 H 0.031 0.969 34 H 0.062 0.938 35 H 0.038 0.962 36 H 0.042 0.958 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.053 0.947 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.052 0.948 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.714 -26.133 0.506 27.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.346 5.346 3 C 0.299 3.701 4 O -0.454 6.454 5 C -0.156 4.156 6 C 0.008 3.992 7 C -0.579 4.579 8 H 0.093 0.907 9 C -0.205 4.205 10 N -0.578 5.578 11 Si 0.798 3.202 12 H -0.175 1.175 13 H -0.206 1.206 14 H -0.206 1.206 15 C 0.090 3.910 16 C -0.227 4.227 17 C -0.204 4.204 18 C -0.072 4.072 19 N -0.247 5.247 20 C -0.107 4.107 21 C -0.163 4.163 22 C -0.165 4.165 23 C -0.093 4.093 24 H 0.088 0.912 25 H 0.100 0.900 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.116 0.884 29 H -0.001 1.001 30 H -0.001 1.001 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.071 0.929 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.070 0.930 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.743 -25.909 0.006 27.344 hybrid contribution -0.112 1.147 0.764 1.383 sum -8.855 -24.762 0.771 26.308 Atomic orbital electron populations 1.22194 0.77682 1.04861 1.03288 1.48137 1.08130 1.04651 1.73720 1.21248 0.87807 0.86335 0.74702 1.90592 1.16243 1.87850 1.50686 1.21640 0.99281 0.90538 1.04091 1.18661 0.93612 0.92450 0.94486 1.21739 0.93948 0.91613 1.50645 0.90680 1.26153 0.95733 1.03982 0.94643 1.70188 1.08338 1.27731 1.51558 0.85266 0.79319 0.78033 0.77577 1.17549 1.20594 1.20585 1.20330 0.92241 0.82876 0.95571 1.22631 1.01299 1.02502 0.96271 1.22097 0.98902 1.02657 0.96700 1.22542 0.94809 0.89582 1.00311 1.64777 1.12896 1.03572 1.43486 1.23704 0.96190 0.96626 0.94193 1.22526 0.97560 0.94252 1.01924 1.22384 0.95085 0.96911 1.02085 1.22918 0.94891 0.89459 1.02061 0.91199 0.90020 0.88573 0.88251 0.88374 1.00135 1.00123 0.92867 0.88865 0.94953 0.91872 0.94254 0.93888 0.89379 0.92729 0.88872 0.90200 0.92881 0.89894 0.91150 0.90551 0.90312 0.93000 0.90078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.22 9.73 127.77 1.24 2.46 16 2 N -0.61 -18.15 2.82 -799.39 -2.26 -20.41 16 3 C 0.51 20.80 7.04 87.66 0.62 21.41 16 4 O -0.57 -28.74 12.37 -3.03 -0.04 -28.78 16 5 C -0.12 -4.88 4.11 29.85 0.12 -4.75 16 6 C 0.05 2.61 4.26 29.85 0.13 2.74 16 7 C -0.54 -31.45 9.11 25.60 0.23 -31.22 16 8 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 9 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 10 N -0.94 -60.53 13.29 21.45 0.28 -60.25 16 11 Si 0.97 44.92 29.54 68.60 2.03 46.94 16 12 H -0.25 -10.68 7.11 99.48 0.71 -9.98 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 14 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 15 C 0.17 4.61 0.76 3.60 0.00 4.61 16 16 C -0.17 -4.53 7.57 71.98 0.55 -3.99 16 17 C -0.15 -4.51 7.60 71.98 0.55 -3.97 16 18 C 0.06 1.04 3.28 86.30 0.28 1.33 16 19 N -0.52 -9.21 4.19 -883.04 -3.70 -12.91 16 20 C 0.02 0.33 4.01 86.65 0.35 0.68 16 21 C -0.12 -1.57 7.06 31.80 0.22 -1.34 16 22 C -0.13 -1.34 6.93 31.47 0.22 -1.13 16 23 C 0.03 0.44 6.70 86.45 0.58 1.02 16 24 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.08 1.63 6.25 -2.39 -0.01 1.61 16 26 H 0.10 1.39 5.47 -2.39 -0.01 1.38 16 27 H 0.10 3.72 7.42 -2.39 -0.02 3.71 16 28 H 0.10 3.69 8.11 -2.39 -0.02 3.67 16 29 H -0.02 -1.28 8.10 -2.38 -0.02 -1.30 16 30 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 31 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 32 H 0.09 2.12 4.29 -2.39 -0.01 2.11 16 33 H 0.03 1.13 6.72 -2.38 -0.02 1.11 16 34 H 0.06 1.46 7.91 -2.39 -0.02 1.44 16 35 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.04 1.68 5.89 -2.39 -0.01 1.66 16 37 H 0.09 2.37 5.21 -2.39 -0.01 2.35 16 38 H 0.05 0.89 7.67 -2.39 -0.02 0.87 16 39 H 0.09 1.61 6.01 -2.39 -0.01 1.60 16 40 H 0.08 1.54 4.89 -2.38 -0.01 1.53 16 41 H 0.05 0.84 7.05 -2.39 -0.02 0.82 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 44 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.05 0.60 7.67 -2.39 -0.02 0.58 16 47 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -76.88 346.94 2.81 -74.07 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.94 Total: 13.48 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 5.55 Total: -12.15 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -5.67 Total: -93.56 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.04 Total: -28.78 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -76.88 2.81 -74.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416106569.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.269 kcal (2) G-P(sol) polarization free energy of solvation -76.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds