Wall clock time and date at job start Tue Mar 31 2020 05:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34780 * 120.00215 * 2 1 4 4 O 1.21585 * 120.00147 * 180.02562 * 3 2 1 5 5 N 1.34778 * 119.99728 * 359.97438 * 3 2 1 6 6 C 1.46497 * 119.99930 * 179.97438 * 5 3 2 7 7 C 1.50702 * 109.47413 * 180.02562 * 6 5 3 8 8 H 1.08006 * 119.99642 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00477 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00317 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99834 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47424 * 89.99641 * 11 9 7 13 13 H 1.48500 * 109.47226 * 209.99870 * 11 9 7 14 14 H 1.48505 * 109.47231 * 329.99976 * 11 9 7 15 15 C 1.46498 * 120.00127 * 180.02562 * 2 1 3 16 16 H 1.08999 * 110.01811 * 175.59175 * 15 2 1 17 17 C 1.53871 * 110.03253 * 54.19868 * 15 2 1 18 18 C 1.54259 * 106.60405 * 240.71939 * 17 15 2 19 19 C 1.54891 * 104.19408 * 23.60875 * 18 17 15 20 20 C 1.54267 * 110.03130 * 297.03603 * 15 2 1 21 21 H 1.08997 * 110.48676 * 214.35433 * 20 15 2 22 22 C 1.53008 * 110.48481 * 336.99621 * 20 15 2 23 23 C 1.52993 * 109.47077 * 93.17055 * 22 20 15 24 24 C 1.53001 * 109.46787 * 213.17144 * 22 20 15 25 25 C 1.53000 * 109.46934 * 333.16757 * 22 20 15 26 26 H 1.09001 * 109.46869 * 293.86222 * 1 2 3 27 27 H 1.09001 * 109.47116 * 53.85417 * 1 2 3 28 28 H 1.08994 * 109.47493 * 173.86106 * 1 2 3 29 29 H 0.96993 * 120.00141 * 0.02562 * 5 3 2 30 30 H 1.08996 * 109.47590 * 300.00353 * 6 5 3 31 31 H 1.09007 * 109.47338 * 60.00433 * 6 5 3 32 32 H 0.97004 * 120.00319 * 180.02562 * 10 9 7 33 33 H 1.09000 * 110.03259 * 0.02562 * 17 15 2 34 34 H 1.09005 * 110.03240 * 121.38243 * 17 15 2 35 35 H 1.08998 * 110.49369 * 142.28952 * 18 17 15 36 36 H 1.09005 * 110.48965 * 264.80312 * 18 17 15 37 37 H 1.09001 * 110.75767 * 80.37294 * 19 18 17 38 38 H 1.09000 * 110.75927 * 203.74410 * 19 18 17 39 39 H 1.09002 * 109.47531 * 86.04056 * 23 22 20 40 40 H 1.09001 * 109.47219 * 206.03648 * 23 22 20 41 41 H 1.08997 * 109.47697 * 326.04255 * 23 22 20 42 42 H 1.08997 * 109.47542 * 60.00021 * 24 22 20 43 43 H 1.09002 * 109.47006 * 179.97438 * 24 22 20 44 44 H 1.09002 * 109.47190 * 299.99964 * 24 22 20 45 45 H 1.08995 * 109.47032 * 90.31625 * 25 22 20 46 46 H 1.08997 * 109.46859 * 210.31020 * 25 22 20 47 47 H 1.08998 * 109.47426 * 330.30928 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3548 1.1672 -0.0005 5 7 1.4650 2.3344 -0.0005 6 6 2.1975 3.6031 0.0000 7 6 1.2183 4.7486 -0.0001 8 1 0.1564 4.5512 -0.0001 9 6 1.6778 6.0485 -0.0001 10 7 0.8233 7.0481 -0.0008 11 14 3.5144 6.3899 -0.0008 12 1 4.0006 6.4803 -1.4010 13 1 3.7798 7.6723 0.6992 14 1 4.2229 5.2881 0.6989 15 6 2.1975 -1.2687 -0.0006 16 1 3.2684 -1.0812 -0.0792 17 6 1.7287 -2.1475 -1.1734 18 6 1.1539 -3.4384 -0.5547 19 6 0.7529 -3.0246 0.8830 20 6 1.8912 -2.0563 1.2900 21 1 2.7696 -2.6147 1.6138 22 6 1.4193 -1.1098 2.3957 23 6 -0.1086 -1.0323 2.3830 24 6 1.8921 -1.6349 3.7528 25 6 2.0027 0.2843 2.1570 26 1 -0.3633 0.4157 0.9398 27 1 -0.3633 0.6062 -0.8299 28 1 -0.3634 -1.0217 -0.1099 29 1 0.4951 2.3344 -0.0005 30 1 2.8236 3.6609 0.8904 31 1 2.8249 3.6609 -0.8895 32 1 1.1466 7.9627 -0.0012 33 1 0.9565 -1.6298 -1.7425 34 1 2.5721 -2.3865 -1.8213 35 1 0.2797 -3.7728 -1.1133 36 1 1.9125 -4.2208 -0.5311 37 1 -0.2090 -2.5118 0.8833 38 1 0.7295 -3.8922 1.5424 39 1 -0.5188 -1.8468 2.9802 40 1 -0.4276 -0.0781 2.8023 41 1 -0.4683 -1.1170 1.3575 42 1 2.9806 -1.6901 3.7618 43 1 1.5563 -0.9604 4.5404 44 1 1.4765 -2.6282 3.9228 45 1 1.3157 0.8651 1.5415 46 1 2.1467 0.7866 3.1135 47 1 2.9612 0.1945 1.6459 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419516924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:57 Heat of formation + Delta-G solvation = 53.282845 kcal Electronic energy + Delta-G solvation = -24867.242171 eV Core-core repulsion = 21667.718573 eV Total energy + Delta-G solvation = -3199.523598 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.81991 -38.48220 -35.22217 -34.40063 -34.21046 -32.23638 -29.80492 -28.21963 -27.97617 -26.90351 -26.61618 -25.26777 -22.30343 -21.16558 -20.40682 -19.75908 -18.53390 -17.52679 -16.80793 -16.37206 -15.66656 -15.34179 -14.90989 -14.46516 -14.28466 -13.88384 -13.53845 -13.31696 -13.02398 -12.87983 -12.78913 -12.56315 -12.30316 -12.18389 -11.89039 -11.68620 -11.47016 -11.18253 -11.15713 -11.04340 -10.90180 -10.77916 -10.68053 -10.55925 -10.17429 -10.00115 -9.93830 -9.81366 -9.46463 -9.37275 -8.73410 -8.14241 -7.83772 -6.18275 -4.19766 3.16241 3.29938 3.36986 3.45754 3.77329 4.36693 4.44675 4.54830 4.68127 4.77680 4.95677 5.04523 5.11462 5.17630 5.17998 5.37951 5.45437 5.49035 5.53751 5.59307 5.61326 5.68216 5.69319 5.79823 5.83904 5.88367 5.90047 5.95800 6.05905 6.10486 6.15651 6.20371 6.24337 6.36005 6.54192 6.59268 6.71330 6.86395 6.95839 7.15735 7.30374 7.43482 7.55902 8.28935 8.69176 8.82668 9.22145 9.43668 10.93743 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025928 B = 0.004774 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.670950 B = 5864.278021 C = 6059.174634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.636 5.636 3 C 0.717 3.283 4 O -0.603 6.603 5 N -0.726 5.726 6 C 0.238 3.762 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.078 3.922 10 N -0.894 5.894 11 Si 0.876 3.124 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.260 1.260 15 C 0.161 3.839 16 H 0.100 0.900 17 C -0.138 4.138 18 C -0.124 4.124 19 C -0.134 4.134 20 C -0.093 4.093 21 H 0.079 0.921 22 C -0.049 4.049 23 C -0.178 4.178 24 C -0.138 4.138 25 C -0.176 4.176 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.085 0.915 29 H 0.392 0.608 30 H 0.023 0.977 31 H 0.018 0.982 32 H 0.267 0.733 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.045 0.955 40 H 0.053 0.947 41 H 0.092 0.908 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.048 0.952 45 H 0.087 0.913 46 H 0.028 0.972 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.462 -21.371 2.168 21.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.374 5.374 3 C 0.421 3.579 4 O -0.484 6.484 5 N -0.379 5.379 6 C 0.115 3.885 7 C -0.578 4.578 8 H 0.096 0.904 9 C -0.125 4.125 10 N -0.531 5.531 11 Si 0.702 3.298 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.184 1.184 15 C 0.056 3.944 16 H 0.118 0.882 17 C -0.176 4.176 18 C -0.162 4.162 19 C -0.171 4.171 20 C -0.113 4.113 21 H 0.097 0.903 22 C -0.049 4.049 23 C -0.233 4.233 24 C -0.195 4.195 25 C -0.234 4.234 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.227 0.773 30 H 0.041 0.959 31 H 0.035 0.965 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.110 0.890 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.105 0.895 46 H 0.047 0.953 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.578 -21.083 2.152 21.251 hybrid contribution 0.379 0.317 0.086 0.502 sum -1.199 -20.766 2.238 20.920 Atomic orbital electron populations 1.22419 0.81278 1.02519 1.01992 1.47419 1.05541 1.04644 1.79787 1.15446 0.85448 0.80445 0.76552 1.90840 1.11888 1.86143 1.59486 1.45619 1.09881 1.05055 1.77302 1.19346 0.92882 0.79689 0.96588 1.21085 0.94349 0.89355 1.53043 0.90377 1.24766 0.98066 0.95792 0.93922 1.69878 1.34392 0.99174 1.49687 0.86827 0.85632 0.78273 0.79025 1.19899 1.20988 1.18430 1.21481 0.97753 0.81968 0.93160 0.88167 1.22599 1.01238 0.95856 0.97940 1.22358 1.00359 0.97235 0.96247 1.23000 0.99447 0.98815 0.95823 1.22530 0.98276 0.95745 0.94747 0.90307 1.20329 0.95255 0.95632 0.93703 1.23064 0.95609 1.00998 1.03679 1.21966 1.00778 1.00107 0.96641 1.23518 1.03391 0.95301 1.01145 0.90907 0.92906 0.89713 0.77333 0.95911 0.96458 0.92322 0.91008 0.91345 0.91851 0.91766 0.89838 0.91852 0.93596 0.92840 0.88985 0.93017 0.92976 0.93277 0.89504 0.95297 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.69 5.73 59.85 0.34 1.04 16 2 N -0.64 -9.21 1.40 -180.30 -0.25 -9.46 16 3 C 0.72 13.94 4.84 -86.91 -0.42 13.52 16 4 O -0.60 -13.90 14.09 5.29 0.07 -13.82 16 5 N -0.73 -15.00 4.88 -68.07 -0.33 -15.33 16 6 C 0.24 5.93 4.50 -5.19 -0.02 5.90 16 7 C -0.54 -14.89 9.83 -34.44 -0.34 -15.23 16 8 H 0.08 2.24 7.84 -52.48 -0.41 1.82 16 9 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 10 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 11 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 15 C 0.16 2.07 2.41 -66.81 -0.16 1.91 16 16 H 0.10 1.55 6.79 -51.93 -0.35 1.19 16 17 C -0.14 -1.43 5.97 -25.62 -0.15 -1.58 16 18 C -0.12 -1.03 6.83 -25.07 -0.17 -1.20 16 19 C -0.13 -1.15 5.26 -24.74 -0.13 -1.28 16 20 C -0.09 -1.02 2.60 -88.96 -0.23 -1.25 16 21 H 0.08 0.86 7.81 -51.93 -0.41 0.45 16 22 C -0.05 -0.59 0.71 -154.51 -0.11 -0.70 16 23 C -0.18 -1.86 5.71 37.15 0.21 -1.65 16 24 C -0.14 -1.54 7.97 37.16 0.30 -1.24 16 25 C -0.18 -2.83 6.22 37.16 0.23 -2.60 16 26 H 0.07 0.83 4.61 -51.93 -0.24 0.59 16 27 H 0.05 0.60 7.69 -51.93 -0.40 0.20 16 28 H 0.08 0.77 4.19 -51.93 -0.22 0.56 16 29 H 0.39 7.28 6.63 -40.82 -0.27 7.01 16 30 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 31 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 32 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.07 0.76 7.02 -51.93 -0.36 0.40 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.69 4.02 -51.93 -0.21 0.48 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.04 0.43 7.86 -51.93 -0.41 0.02 16 40 H 0.05 0.61 7.45 -51.93 -0.39 0.23 16 41 H 0.09 0.86 1.91 -51.94 -0.10 0.76 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.60 8.11 -51.93 -0.42 0.18 16 44 H 0.05 0.47 8.12 -51.93 -0.42 0.05 16 45 H 0.09 1.44 2.38 -57.77 -0.14 1.30 16 46 H 0.03 0.48 7.81 -51.93 -0.41 0.08 16 47 H 0.08 1.52 4.33 -51.93 -0.22 1.30 16 LS Contribution 324.94 15.07 4.90 4.90 Total: -1.00 -31.25 324.94 -7.68 -38.93 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -7.42 Total: 5.87 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -0.75 Total: -2.23 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.19 Total: -50.65 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.07 Total: -13.82 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.25 -7.68 -38.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419516924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.212 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds