Wall clock time and date at job start Tue Mar 31 2020 05:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34782 * 120.00068 * 2 1 4 4 O 1.21583 * 119.99829 * 180.02562 * 3 2 1 5 5 N 1.34777 * 119.99803 * 359.97438 * 3 2 1 6 6 C 1.46501 * 120.00056 * 180.02562 * 5 3 2 7 7 C 1.50692 * 109.47042 * 179.97438 * 6 5 3 8 8 H 1.08001 * 120.00455 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00141 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99673 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00480 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47271 * 270.00229 * 11 9 7 13 13 H 1.48500 * 109.47190 * 30.00328 * 11 9 7 14 14 H 1.48500 * 109.47286 * 150.00150 * 11 9 7 15 15 C 1.46504 * 120.00043 * 179.97438 * 2 1 3 16 16 H 1.09003 * 110.01647 * 173.27095 * 15 2 1 17 17 C 1.54260 * 110.03518 * 294.66339 * 15 2 1 18 18 C 1.54891 * 104.19626 * 95.67269 * 17 15 2 19 19 C 1.54892 * 102.74769 * 37.94307 * 18 17 15 20 20 C 1.53878 * 110.03033 * 51.88261 * 15 2 1 21 21 H 1.09000 * 110.03089 * 359.97438 * 20 15 2 22 22 C 1.53000 * 110.03440 * 121.42836 * 20 15 2 23 23 C 1.52997 * 109.46793 * 54.89751 * 22 20 15 24 24 C 1.52991 * 109.47236 * 174.90012 * 22 20 15 25 25 C 1.53002 * 109.47160 * 294.89945 * 22 20 15 26 26 H 1.08997 * 109.46905 * 94.17892 * 1 2 3 27 27 H 1.09005 * 109.46932 * 214.17289 * 1 2 3 28 28 H 1.08997 * 109.46880 * 334.17452 * 1 2 3 29 29 H 0.97002 * 120.00025 * 359.97438 * 5 3 2 30 30 H 1.09000 * 109.46887 * 59.99656 * 6 5 3 31 31 H 1.09002 * 109.46328 * 299.99901 * 6 5 3 32 32 H 0.97005 * 119.99959 * 359.97438 * 10 9 7 33 33 H 1.09002 * 110.48773 * 214.35429 * 17 15 2 34 34 H 1.09002 * 110.48889 * 336.86294 * 17 15 2 35 35 H 1.09004 * 110.75076 * 156.25730 * 18 17 15 36 36 H 1.09003 * 110.75488 * 279.62750 * 18 17 15 37 37 H 1.09003 * 110.48259 * 80.73151 * 19 18 17 38 38 H 1.08997 * 110.48604 * 203.24832 * 19 18 17 39 39 H 1.09001 * 109.47631 * 58.19778 * 23 22 20 40 40 H 1.09004 * 109.46901 * 178.19845 * 23 22 20 41 41 H 1.09001 * 109.47746 * 298.19335 * 23 22 20 42 42 H 1.09000 * 109.47540 * 59.99966 * 24 22 20 43 43 H 1.08999 * 109.47302 * 180.02562 * 24 22 20 44 44 H 1.09000 * 109.46862 * 300.00120 * 24 22 20 45 45 H 1.09000 * 109.47044 * 59.99668 * 25 22 20 46 46 H 1.08993 * 109.47265 * 180.02562 * 25 22 20 47 47 H 1.09003 * 109.46887 * 300.00382 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3547 1.1672 -0.0005 5 7 1.4650 2.3344 -0.0005 6 6 2.1975 3.6032 -0.0011 7 6 1.2182 4.7485 -0.0022 8 1 0.1563 4.5512 -0.0029 9 6 1.6777 6.0485 -0.0024 10 7 2.9707 6.2888 -0.0021 11 14 0.4639 7.4683 -0.0045 12 1 0.1437 7.8438 -1.4052 13 1 -0.7802 7.0570 0.6943 14 1 1.0630 8.6328 0.6955 15 6 2.1975 -1.2688 0.0006 16 1 3.2649 -1.0834 -0.1195 17 6 1.9380 -2.0282 1.3179 18 6 0.7862 -3.0047 0.9730 19 6 1.1356 -3.4495 -0.4690 20 6 1.6882 -2.1719 -1.1364 21 1 0.8958 -1.6664 -1.6883 22 6 2.8398 -2.5279 -2.0788 23 6 3.9816 -3.1534 -1.2752 24 6 2.3490 -3.5259 -3.1294 25 6 3.3402 -1.2602 -2.7742 26 1 -0.3633 -0.0749 -1.0249 27 1 -0.3633 -0.8503 0.5773 28 1 -0.3633 0.9250 0.4477 29 1 0.4950 2.3344 -0.0013 30 1 2.8242 3.6605 -0.8911 31 1 2.8241 3.6612 0.8889 32 1 3.6011 5.5515 -0.0013 33 1 2.8277 -2.5798 1.6219 34 1 1.6323 -1.3367 2.1031 35 1 0.7870 -3.8579 1.6513 36 1 -0.1752 -2.4917 0.9967 37 1 1.8957 -4.2306 -0.4536 38 1 0.2425 -3.7976 -0.9878 39 1 3.6169 -4.0386 -0.7541 40 1 4.7889 -3.4363 -1.9508 41 1 4.3526 -2.4309 -0.5482 42 1 1.5355 -3.0804 -3.7020 43 1 3.1695 -3.7799 -3.8005 44 1 1.9925 -4.4290 -2.6340 45 1 3.6898 -0.5492 -2.0257 46 1 4.1602 -1.5139 -3.4459 47 1 2.5267 -0.8146 -3.3466 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419516925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:01 Heat of formation + Delta-G solvation = -51.656170 kcal Electronic energy + Delta-G solvation = -23945.929465 eV Core-core repulsion = 20741.855370 eV Total energy + Delta-G solvation = -3204.074095 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.54307 -38.64301 -35.67299 -34.37765 -33.81466 -32.22049 -28.94240 -27.98973 -27.33032 -26.96305 -26.80861 -25.52341 -22.76862 -21.21120 -20.77706 -19.19408 -18.23333 -17.97191 -16.55926 -16.40631 -15.61777 -15.18970 -14.90122 -14.33560 -14.09625 -13.78673 -13.72624 -13.26887 -13.01365 -12.88744 -12.53509 -12.40607 -12.33880 -12.21031 -11.98003 -11.89419 -11.64571 -11.57586 -11.36761 -11.16020 -11.03753 -10.95221 -10.82314 -10.75142 -10.37401 -10.30063 -10.23618 -10.16180 -9.38416 -8.75486 -8.65360 -8.34152 -7.79086 -6.48429 -4.21170 3.20581 3.39007 3.42454 3.58092 3.86274 4.39415 4.45666 4.53240 4.61823 4.78204 4.93338 4.98094 5.01736 5.20796 5.30706 5.35394 5.44068 5.45086 5.53544 5.55113 5.57418 5.60292 5.63534 5.70868 5.75838 5.80332 5.85536 5.88786 5.90266 6.00133 6.09087 6.12095 6.19999 6.22825 6.32628 6.45514 6.54382 6.81713 7.05351 7.30893 7.41821 7.50800 7.86638 8.32618 8.65373 8.84817 9.31209 9.53741 10.91956 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026599 B = 0.003919 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.408004 B = 7142.077151 C = 7509.062252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.631 5.631 3 C 0.695 3.305 4 O -0.601 6.601 5 N -0.725 5.725 6 C 0.257 3.743 7 C -0.621 4.621 8 H 0.056 0.944 9 C 0.023 3.977 10 N -0.903 5.903 11 Si 1.078 2.922 12 H -0.286 1.286 13 H -0.288 1.288 14 H -0.282 1.282 15 C 0.156 3.844 16 H 0.108 0.892 17 C -0.136 4.136 18 C -0.127 4.127 19 C -0.120 4.120 20 C -0.091 4.091 21 H 0.078 0.922 22 C -0.059 4.059 23 C -0.147 4.147 24 C -0.139 4.139 25 C -0.146 4.146 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.388 0.612 30 H 0.014 0.986 31 H 0.014 0.986 32 H 0.273 0.727 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.069 0.931 46 H 0.050 0.950 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.724 -21.733 -1.896 22.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.369 5.369 3 C 0.397 3.603 4 O -0.481 6.481 5 N -0.379 5.379 6 C 0.135 3.865 7 C -0.660 4.660 8 H 0.074 0.926 9 C -0.183 4.183 10 N -0.538 5.538 11 Si 0.906 3.094 12 H -0.213 1.213 13 H -0.214 1.214 14 H -0.208 1.208 15 C 0.052 3.948 16 H 0.126 0.874 17 C -0.175 4.175 18 C -0.164 4.164 19 C -0.158 4.158 20 C -0.111 4.111 21 H 0.096 0.904 22 C -0.059 4.059 23 C -0.204 4.204 24 C -0.196 4.196 25 C -0.203 4.203 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.223 0.777 30 H 0.032 0.968 31 H 0.031 0.969 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.069 0.931 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.918 -20.002 -1.898 20.685 hybrid contribution -0.507 -1.649 -0.049 1.726 sum -5.425 -21.652 -1.948 22.406 Atomic orbital electron populations 1.21716 0.81036 1.02702 1.01216 1.47090 1.05613 1.04752 1.79489 1.16107 0.85512 0.80555 0.78161 1.90834 1.11781 1.86290 1.59156 1.45666 1.09659 1.05304 1.77226 1.19016 0.92574 0.78666 0.96203 1.22084 0.93670 0.92385 1.57817 0.92624 1.25858 0.99258 0.99821 0.93382 1.70721 1.01651 1.36321 1.45100 0.83412 0.74047 0.75109 0.76830 1.21306 1.21417 1.20802 1.21632 0.98196 0.81833 0.93161 0.87410 1.22787 0.98719 0.98167 0.97853 1.22619 0.98529 0.98772 0.96523 1.22523 1.00468 0.97410 0.95367 1.22210 0.97480 0.95505 0.95898 0.90359 1.20501 0.94849 0.95650 0.94920 1.22019 0.97637 1.00698 1.00075 1.21876 1.00844 0.98650 0.98266 1.21932 1.00617 0.97044 1.00739 0.93305 0.91074 0.91419 0.77734 0.96838 0.96857 0.91632 0.90985 0.91206 0.91790 0.91385 0.90949 0.91906 0.92444 0.92869 0.92039 0.92912 0.92890 0.92655 0.91250 0.93069 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.95 9.19 59.85 0.55 1.50 16 2 N -0.63 -10.01 2.72 -178.38 -0.49 -10.49 16 3 C 0.70 14.80 8.28 -86.91 -0.72 14.08 16 4 O -0.60 -15.00 15.52 5.29 0.08 -14.92 16 5 N -0.73 -16.21 5.42 -66.42 -0.36 -16.57 16 6 C 0.26 7.01 4.74 -5.20 -0.02 6.99 16 7 C -0.62 -17.41 9.28 -34.44 -0.32 -17.73 16 8 H 0.06 1.48 7.60 -52.49 -0.40 1.08 16 9 C 0.02 0.64 5.46 -17.82 -0.10 0.55 16 10 N -0.90 -27.71 13.65 55.43 0.76 -26.95 16 11 Si 1.08 24.74 29.90 -169.99 -5.08 19.65 16 12 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 13 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 C 0.16 2.13 1.93 -66.81 -0.13 2.00 16 16 H 0.11 1.76 3.81 -51.93 -0.20 1.56 16 17 C -0.14 -1.57 6.15 -25.07 -0.15 -1.72 16 18 C -0.13 -1.14 6.51 -24.74 -0.16 -1.30 16 19 C -0.12 -1.05 5.06 -25.01 -0.13 -1.18 16 20 C -0.09 -1.01 1.75 -89.44 -0.16 -1.16 16 21 H 0.08 0.93 6.73 -51.93 -0.35 0.58 16 22 C -0.06 -0.64 0.52 -154.51 -0.08 -0.72 16 23 C -0.15 -1.51 7.92 37.16 0.29 -1.21 16 24 C -0.14 -1.26 8.20 37.15 0.30 -0.96 16 25 C -0.15 -1.95 8.28 37.16 0.31 -1.64 16 26 H 0.05 0.56 7.59 -51.93 -0.39 0.16 16 27 H 0.07 0.72 5.05 -51.93 -0.26 0.46 16 28 H 0.07 0.86 6.15 -51.93 -0.32 0.54 16 29 H 0.39 7.65 5.97 -40.82 -0.24 7.41 16 30 H 0.01 0.41 8.01 -51.93 -0.42 -0.01 16 31 H 0.01 0.40 8.01 -51.93 -0.42 -0.02 16 32 H 0.27 8.52 7.22 -40.82 -0.29 8.22 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.89 8.04 -51.93 -0.42 0.48 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.59 5.92 -51.93 -0.31 0.29 16 37 H 0.07 0.60 5.50 -51.93 -0.29 0.31 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.51 6.15 -51.93 -0.32 0.19 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.72 6.24 -51.93 -0.32 0.40 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.05 0.44 6.94 -51.93 -0.36 0.08 16 45 H 0.07 1.15 6.62 -51.93 -0.34 0.81 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 348.49 15.07 5.25 5.25 Total: -1.00 -32.47 348.49 -8.18 -40.64 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -7.83 Total: 5.88 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -0.51 Total: -2.50 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.09 Total: -54.02 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: 0.08 Total: -14.92 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.08 Total: 19.65 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.47 -8.18 -40.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419516925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.011 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds