Wall clock time and date at job start Tue Mar 31 2020 05:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34778 * 119.99690 * 2 1 4 4 O 1.21589 * 120.00112 * 179.97438 * 3 2 1 5 5 N 1.34779 * 120.00398 * 0.02562 * 3 2 1 6 6 C 1.46498 * 120.00562 * 179.97438 * 5 3 2 7 7 C 1.50692 * 109.47261 * 179.97438 * 6 5 3 8 8 H 1.08006 * 120.00091 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00058 * 179.72347 * 7 6 5 10 10 N 1.31512 * 119.99934 * 0.27478 * 9 7 6 11 11 Si 1.86800 * 120.00004 * 180.27061 * 9 7 6 12 12 H 1.48506 * 109.46886 * 90.00121 * 11 9 7 13 13 H 1.48498 * 109.47010 * 209.99878 * 11 9 7 14 14 H 1.48493 * 109.47373 * 330.00304 * 11 9 7 15 15 C 1.46497 * 120.00564 * 180.02562 * 2 1 3 16 16 H 1.08995 * 110.01867 * 178.60676 * 15 2 1 17 17 C 1.54267 * 110.03236 * 57.16636 * 15 2 1 18 18 C 1.54895 * 104.19426 * 264.32816 * 17 15 2 19 19 C 1.54892 * 102.74835 * 322.05887 * 18 17 15 20 20 C 1.53880 * 110.02734 * 299.99976 * 15 2 1 21 21 H 1.08999 * 110.03270 * 359.95174 * 20 15 2 22 22 C 1.52999 * 110.03065 * 238.56611 * 20 15 2 23 23 C 1.53000 * 109.47130 * 65.26795 * 22 20 15 24 24 C 1.52995 * 109.47341 * 185.27021 * 22 20 15 25 25 C 1.53002 * 109.47333 * 305.26640 * 22 20 15 26 26 H 1.09005 * 109.47107 * 90.00032 * 1 2 3 27 27 H 1.08998 * 109.46950 * 209.99325 * 1 2 3 28 28 H 1.08995 * 109.47883 * 329.99682 * 1 2 3 29 29 H 0.97005 * 119.99356 * 359.97438 * 5 3 2 30 30 H 1.08998 * 109.47172 * 59.99613 * 6 5 3 31 31 H 1.08998 * 109.46835 * 299.99869 * 6 5 3 32 32 H 0.96997 * 120.00448 * 179.97438 * 10 9 7 33 33 H 1.08996 * 110.48810 * 23.00454 * 17 15 2 34 34 H 1.09001 * 110.48541 * 145.65401 * 17 15 2 35 35 H 1.09004 * 110.75865 * 203.74327 * 18 17 15 36 36 H 1.09004 * 110.91581 * 80.44364 * 18 17 15 37 37 H 1.08995 * 110.48240 * 279.26268 * 19 18 17 38 38 H 1.09001 * 110.59995 * 156.67723 * 19 18 17 39 39 H 1.08998 * 109.46959 * 60.00042 * 23 22 20 40 40 H 1.08997 * 109.46972 * 179.97438 * 23 22 20 41 41 H 1.09000 * 109.47213 * 299.99862 * 23 22 20 42 42 H 1.09001 * 109.47234 * 59.99320 * 24 22 20 43 43 H 1.09002 * 109.47807 * 180.02562 * 24 22 20 44 44 H 1.09003 * 109.47063 * 300.00549 * 24 22 20 45 45 H 1.09012 * 109.46810 * 62.05704 * 25 22 20 46 46 H 1.09000 * 109.47605 * 182.04831 * 25 22 20 47 47 H 1.08997 * 109.47426 * 302.05775 * 25 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3547 1.1673 0.0005 5 7 1.4649 2.3345 0.0005 6 6 2.1973 3.6032 0.0011 7 6 1.2180 4.7486 0.0010 8 1 0.1561 4.5512 0.0001 9 6 1.6775 6.0486 0.0072 10 7 2.9704 6.2890 0.0078 11 14 0.4635 7.4683 0.0147 12 1 0.1424 7.8376 1.4168 13 1 1.0631 8.6359 -0.6798 14 1 -0.7800 7.0600 -0.6868 15 6 2.1975 -1.2686 -0.0006 16 1 3.2707 -1.0797 -0.0254 17 6 1.7813 -2.1187 -1.2188 18 6 0.6851 -3.0632 -0.6661 19 6 1.2113 -3.4059 0.7499 20 6 1.8351 -2.0870 1.2511 21 1 1.1148 -1.5399 1.8593 22 6 3.0949 -2.3805 2.0683 23 6 3.6687 -1.0694 2.6094 24 6 2.7416 -3.3032 3.2365 25 6 4.1342 -3.0624 1.1762 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5137 28 1 -0.3635 0.8899 0.5138 29 1 0.4948 2.3344 0.0005 30 1 2.8240 3.6614 -0.8888 31 1 2.8239 3.6606 0.8911 32 1 3.2938 7.2034 0.0118 33 1 1.3760 -1.4837 -2.0065 34 1 2.6292 -2.6944 -1.5898 35 1 0.6061 -3.9625 -1.2769 36 1 -0.2759 -2.5520 -0.6078 37 1 1.9671 -4.1894 0.6966 38 1 0.3915 -3.7115 1.4001 39 1 2.9283 -0.5837 3.2449 40 1 4.5659 -1.2786 3.1919 41 1 3.9204 -0.4121 1.7771 42 1 2.3327 -4.2372 2.8510 43 1 3.6390 -3.5119 3.8190 44 1 2.0011 -2.8175 3.8720 45 1 4.4130 -2.3905 0.3643 46 1 5.0176 -3.3043 1.7670 47 1 3.7125 -3.9779 0.7615 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419516926.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:05 Heat of formation + Delta-G solvation = -49.842306 kcal Electronic energy + Delta-G solvation = -23938.954549 eV Core-core repulsion = 20734.959109 eV Total energy + Delta-G solvation = -3203.995440 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.47056 -38.52117 -35.60316 -34.13676 -33.68552 -32.14632 -28.90208 -27.95205 -27.30110 -27.05422 -26.85623 -25.63051 -22.69246 -21.12322 -20.65379 -19.10857 -18.13530 -17.86712 -16.32025 -16.02334 -15.44598 -15.08626 -14.89240 -14.56901 -14.20150 -13.83445 -13.60793 -13.10663 -13.01285 -12.89958 -12.45268 -12.38234 -12.29301 -11.95724 -11.77476 -11.75205 -11.56845 -11.50998 -11.29329 -11.08361 -10.98692 -10.90072 -10.87882 -10.80536 -10.30455 -10.26193 -10.23272 -10.15185 -9.33182 -9.22467 -8.68873 -8.26886 -7.65779 -6.12319 -4.18599 3.26372 3.27745 3.33208 3.36677 3.97601 4.34171 4.46960 4.59320 4.69060 4.91395 5.01342 5.04150 5.07965 5.23729 5.30887 5.42471 5.50398 5.52569 5.54773 5.60759 5.63706 5.67271 5.72350 5.76346 5.81598 5.85009 5.91825 5.92695 5.98422 6.07937 6.14823 6.18713 6.24363 6.27895 6.41033 6.52886 6.67424 6.93824 7.26238 7.57211 7.61082 7.62214 7.92157 8.06821 8.80493 8.97446 9.38700 9.53455 10.97960 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026233 B = 0.003964 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.099529 B = 7061.809108 C = 7501.917564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.633 5.633 3 C 0.695 3.305 4 O -0.598 6.598 5 N -0.730 5.730 6 C 0.267 3.733 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.064 3.936 10 N -0.885 5.885 11 Si 0.903 3.097 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.156 3.844 16 H 0.109 0.891 17 C -0.135 4.135 18 C -0.126 4.126 19 C -0.121 4.121 20 C -0.092 4.092 21 H 0.077 0.923 22 C -0.059 4.059 23 C -0.149 4.149 24 C -0.139 4.139 25 C -0.147 4.147 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.386 0.614 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.265 0.735 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.061 0.939 46 H 0.052 0.948 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.025 -21.006 2.130 21.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.371 5.371 3 C 0.396 3.604 4 O -0.478 6.478 5 N -0.383 5.383 6 C 0.146 3.854 7 C -0.579 4.579 8 H 0.079 0.921 9 C -0.140 4.140 10 N -0.523 5.523 11 Si 0.730 3.270 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.051 3.949 16 H 0.127 0.873 17 C -0.174 4.174 18 C -0.164 4.164 19 C -0.159 4.159 20 C -0.112 4.112 21 H 0.095 0.905 22 C -0.059 4.059 23 C -0.206 4.206 24 C -0.197 4.197 25 C -0.204 4.204 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.219 0.781 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.071 0.929 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.973 -20.769 2.130 21.252 hybrid contribution -1.202 0.911 0.057 1.509 sum -5.175 -19.857 2.187 20.637 Atomic orbital electron populations 1.21629 0.81132 1.02415 1.01127 1.47105 1.05545 1.04820 1.79652 1.16104 0.85543 0.80485 0.78234 1.90831 1.11721 1.86189 1.59042 1.45854 1.09612 1.05715 1.77123 1.18949 0.91969 0.77000 0.97501 1.21226 0.92943 0.90769 1.52985 0.92086 1.24935 0.95364 0.98858 0.94808 1.69978 1.12546 1.20725 1.49043 0.86432 0.80866 0.81517 0.78179 1.20505 1.21025 1.19794 1.21621 0.98381 0.81949 0.92910 0.87315 1.22743 0.98783 0.97886 0.97967 1.22569 0.98535 0.99029 0.96227 1.22516 0.99858 0.97410 0.96069 1.22236 0.96807 0.95709 0.96413 0.90482 1.20498 0.94672 0.95785 0.94929 1.21973 1.00058 0.96586 1.01986 1.21883 1.01112 0.99044 0.97612 1.22014 0.98222 1.00352 0.99773 0.93330 0.91328 0.91594 0.78054 0.95839 0.95838 0.92507 0.91179 0.91007 0.91901 0.91486 0.90988 0.92007 0.93228 0.93259 0.90520 0.92741 0.92939 0.92957 0.92033 0.92925 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.99 8.68 59.84 0.52 1.51 16 2 N -0.63 -9.98 2.69 -178.39 -0.48 -10.46 16 3 C 0.70 14.69 8.28 -86.91 -0.72 13.97 16 4 O -0.60 -14.85 14.55 5.29 0.08 -14.77 16 5 N -0.73 -16.13 5.41 -66.42 -0.36 -16.49 16 6 C 0.27 7.28 5.43 -5.20 -0.03 7.25 16 7 C -0.54 -14.92 9.28 -34.44 -0.32 -15.24 16 8 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 11 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 15 C 0.16 2.13 1.96 -66.81 -0.13 2.00 16 16 H 0.11 1.78 3.80 -51.93 -0.20 1.58 16 17 C -0.14 -1.52 6.10 -25.07 -0.15 -1.68 16 18 C -0.13 -1.13 6.38 -24.73 -0.16 -1.29 16 19 C -0.12 -1.08 5.04 -25.07 -0.13 -1.21 16 20 C -0.09 -1.04 1.49 -89.50 -0.13 -1.17 16 21 H 0.08 0.95 7.01 -51.93 -0.36 0.59 16 22 C -0.06 -0.66 0.52 -154.51 -0.08 -0.74 16 23 C -0.15 -2.09 8.28 37.16 0.31 -1.78 16 24 C -0.14 -1.32 8.20 37.16 0.30 -1.02 16 25 C -0.15 -1.54 7.91 37.16 0.29 -1.25 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.69 5.54 -51.93 -0.29 0.40 16 28 H 0.07 0.82 6.36 -51.93 -0.33 0.49 16 29 H 0.39 7.44 6.05 -40.82 -0.25 7.19 16 30 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.07 0.86 8.01 -51.93 -0.42 0.45 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.58 6.56 -51.93 -0.34 0.24 16 37 H 0.07 0.61 5.50 -51.93 -0.29 0.32 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 1.33 5.65 -51.93 -0.29 1.04 16 42 H 0.05 0.45 6.93 -51.93 -0.36 0.09 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.73 6.24 -51.92 -0.32 0.41 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.51 6.15 -51.93 -0.32 0.19 16 LS Contribution 349.08 15.07 5.26 5.26 Total: -1.00 -31.61 349.08 -8.26 -39.86 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -7.95 Total: 5.18 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -0.52 Total: 1.05 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.10 Total: -52.61 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.08 Total: -14.77 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.61 -8.26 -39.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419516926.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.978 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds