Wall clock time and date at job start Tue Mar 31 2020 05:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.46933 * 2 1 4 4 C 1.52998 * 109.47430 * 119.99815 * 2 1 3 5 5 C 1.52998 * 109.47349 * 172.31086 * 4 2 1 6 6 H 1.08997 * 109.87530 * 306.32611 * 5 4 2 7 7 C 1.54330 * 109.88241 * 67.33923 * 5 4 2 8 8 C 1.55153 * 102.94257 * 141.61143 * 7 5 4 9 9 C 1.54908 * 101.58335 * 324.49763 * 8 7 5 10 10 N 1.47022 * 109.88438 * 185.30274 * 5 4 2 11 11 C 1.34782 * 125.64507 * 61.60916 * 10 5 4 12 12 O 1.21280 * 119.99873 * 355.04291 * 11 10 5 13 13 C 1.50701 * 119.99932 * 175.03990 * 11 10 5 14 14 H 1.08996 * 109.47069 * 39.99604 * 13 11 10 15 15 N 1.46896 * 109.47091 * 160.00262 * 13 11 10 16 16 C 1.52999 * 109.46888 * 279.99947 * 13 11 10 17 17 C 1.53003 * 109.47117 * 174.99988 * 16 13 11 18 18 C 1.50703 * 109.47216 * 180.02562 * 17 16 13 19 19 H 1.07996 * 119.99597 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99538 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00289 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99491 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46952 * 89.99929 * 22 20 18 24 24 H 1.48500 * 109.47099 * 209.99602 * 22 20 18 25 25 H 1.48499 * 109.47362 * 330.00183 * 22 20 18 26 26 H 1.09000 * 109.47582 * 60.00123 * 1 2 3 27 27 H 1.09004 * 109.46691 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47383 * 299.99959 * 1 2 3 29 29 H 1.09004 * 109.47702 * 240.00073 * 2 1 3 30 30 H 1.09001 * 109.47334 * 193.58824 * 3 2 1 31 31 H 1.08998 * 109.46946 * 313.59115 * 3 2 1 32 32 H 1.09002 * 109.47316 * 73.58760 * 3 2 1 33 33 H 1.09000 * 109.47265 * 292.30960 * 4 2 1 34 34 H 1.08995 * 109.46804 * 52.30846 * 4 2 1 35 35 H 1.09003 * 110.71910 * 259.97387 * 7 5 4 36 36 H 1.08999 * 110.71826 * 23.24815 * 7 5 4 37 37 H 1.09002 * 111.00663 * 82.57293 * 8 7 5 38 38 H 1.09001 * 111.00538 * 206.42335 * 8 7 5 39 39 H 1.08998 * 110.36624 * 155.85157 * 9 8 7 40 40 H 1.09006 * 110.36562 * 278.06279 * 9 8 7 41 41 H 1.00896 * 111.00188 * 59.99572 * 15 13 11 42 42 H 1.00892 * 111.00142 * 183.95519 * 15 13 11 43 43 H 1.08998 * 109.47590 * 295.00106 * 16 13 11 44 44 H 1.08999 * 109.47183 * 54.99966 * 16 13 11 45 45 H 1.08998 * 109.46987 * 300.00488 * 17 16 13 46 46 H 1.08999 * 109.47112 * 59.99935 * 17 16 13 47 47 H 0.96998 * 119.99382 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5578 -0.8905 1.1565 6 1 3.8195 -1.3789 0.2178 7 6 4.2458 0.4884 1.2402 8 6 5.5080 0.1957 2.0937 9 6 4.9732 -0.8673 3.0855 10 7 4.0416 -1.6927 2.2895 11 6 3.6914 -2.9667 2.5562 12 8 2.8459 -3.5168 1.8830 13 6 4.3506 -3.7075 3.6910 14 1 4.4759 -3.0351 4.5397 15 7 3.5097 -4.8449 4.0873 16 6 5.7200 -4.2188 3.2390 17 6 6.4414 -4.8616 4.4253 18 6 7.7905 -5.3647 3.9802 19 1 8.1022 -5.2382 2.9540 20 6 8.6265 -5.9864 4.8832 21 7 8.2470 -6.1400 6.1330 22 14 10.2984 -6.6107 4.3313 23 1 11.3106 -5.5389 4.5099 24 1 10.6795 -7.7921 5.1464 25 1 10.2344 -6.9972 2.8989 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 3.1028 1.4522 -0.2414 31 1 1.4929 2.0212 -0.7443 32 1 1.8872 1.8819 0.9858 33 1 1.7934 -0.1341 2.1339 34 1 1.5687 -1.7014 1.3207 35 1 4.5249 0.8411 0.2473 36 1 3.6012 1.2112 1.7404 37 1 6.3097 -0.2125 1.4783 38 1 5.8392 1.0904 2.6210 39 1 5.7921 -1.4793 3.4636 40 1 4.4479 -0.3861 3.9106 41 1 3.3785 -5.4832 3.3171 42 1 3.8978 -5.3197 4.8884 43 1 5.5891 -4.9585 2.4492 44 1 6.3125 -3.3854 2.8616 45 1 6.5723 -4.1219 5.2151 46 1 5.8488 -5.6950 4.8027 47 1 8.8354 -6.5771 6.7682 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424081971.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:55 Heat of formation + Delta-G solvation = -61.298632 kcal Electronic energy + Delta-G solvation = -23263.816676 eV Core-core repulsion = 20059.324453 eV Total energy + Delta-G solvation = -3204.492223 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.30395 -38.01503 -35.87938 -35.40388 -32.84645 -31.58422 -30.16810 -29.86594 -27.61059 -26.41633 -25.74584 -24.13429 -22.37836 -21.08004 -20.31008 -20.14603 -18.70981 -17.38089 -16.42977 -16.17561 -15.32757 -14.97758 -14.65021 -14.45665 -14.19205 -14.10266 -13.88181 -13.70783 -13.28195 -13.10234 -12.80631 -12.65524 -12.43662 -12.22409 -12.16949 -11.78204 -11.69037 -11.49198 -11.06543 -10.98850 -10.95752 -10.87988 -10.72813 -10.65790 -10.63912 -10.48169 -9.96847 -9.82940 -9.26306 -9.14122 -8.47693 -8.44150 -8.15435 -6.08822 -4.11917 2.97790 3.10730 3.26488 3.33426 3.36902 4.38312 4.40925 4.50975 4.58709 4.78809 4.85260 4.95391 5.05697 5.22277 5.24611 5.27429 5.28811 5.38026 5.48499 5.52139 5.56182 5.60435 5.63426 5.68399 5.71683 5.76345 5.79111 5.85798 5.94578 5.97595 6.07057 6.17608 6.25278 6.29980 6.32302 6.51486 6.59251 6.88275 7.47490 7.52831 7.62370 7.75987 7.88402 7.93378 8.31149 8.50640 8.94040 9.52983 11.02079 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027066 B = 0.003582 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.270627 B = 7815.651362 C = 8392.712143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.160 4.160 4 C -0.126 4.126 5 C 0.140 3.860 6 H 0.070 0.930 7 C -0.130 4.130 8 C -0.137 4.137 9 C 0.094 3.906 10 N -0.619 5.619 11 C 0.542 3.458 12 O -0.536 6.536 13 C 0.078 3.922 14 H 0.094 0.906 15 N -0.831 5.831 16 C -0.136 4.136 17 C 0.025 3.975 18 C -0.523 4.523 19 H 0.054 0.946 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.892 3.108 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.345 0.655 42 H 0.354 0.646 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.934 16.117 -9.046 20.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.217 4.217 4 C -0.164 4.164 5 C 0.036 3.964 6 H 0.088 0.912 7 C -0.168 4.168 8 C -0.175 4.175 9 C -0.029 4.029 10 N -0.354 5.354 11 C 0.332 3.668 12 O -0.412 6.412 13 C -0.037 4.037 14 H 0.112 0.888 15 N -0.363 5.363 16 C -0.176 4.176 17 C -0.012 4.012 18 C -0.562 4.562 19 H 0.073 0.927 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.720 3.280 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.158 0.842 42 H 0.169 0.831 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.936 16.177 -9.068 21.530 hybrid contribution 1.905 -0.918 -0.358 2.144 sum -9.031 15.260 -9.426 20.082 Atomic orbital electron populations 1.21821 0.95290 1.01824 1.01347 1.21042 0.95706 0.96120 0.98334 1.22322 1.01939 0.95965 1.01472 1.22047 0.94985 1.01954 0.97430 1.21529 0.93884 0.90918 0.90020 0.91175 1.23096 0.96684 0.96261 1.00722 1.22830 0.97792 0.98849 0.98003 1.22461 0.93154 0.93010 0.94250 1.48611 1.46424 1.12098 1.28283 1.20562 0.81391 0.79525 0.85354 1.90611 1.32314 1.66944 1.51359 1.21443 0.92404 0.94284 0.95562 0.88833 1.58739 1.52038 1.13609 1.11909 1.22372 0.93404 1.00366 1.01469 1.19096 0.94757 0.95508 0.91823 1.21179 1.01062 1.37947 0.95970 0.92746 1.25010 0.98441 0.95919 0.94924 1.69950 1.36938 1.43341 1.02963 0.86588 0.84222 0.78486 0.78698 1.20608 1.21145 1.19886 0.92930 0.92620 0.92863 0.91296 0.91357 0.93270 0.92676 0.92051 0.90084 0.89903 0.90017 0.90458 0.89887 0.89520 0.91432 0.84177 0.83110 0.92764 0.92549 0.96388 0.96412 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.14 37.15 0.34 -0.97 16 2 C -0.09 -0.88 2.89 -90.62 -0.26 -1.14 16 3 C -0.16 -1.21 7.72 37.16 0.29 -0.93 16 4 C -0.13 -1.49 4.36 -26.73 -0.12 -1.60 16 5 C 0.14 1.68 2.91 -66.95 -0.20 1.49 16 6 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 7 C -0.13 -1.13 4.44 -24.90 -0.11 -1.24 16 8 C -0.14 -1.25 7.08 -24.59 -0.17 -1.43 16 9 C 0.09 1.11 6.45 -2.35 -0.02 1.09 16 10 N -0.62 -8.82 3.08 -162.76 -0.50 -9.32 16 11 C 0.54 9.54 6.92 -10.98 -0.08 9.46 16 12 O -0.54 -10.82 15.04 5.56 0.08 -10.74 16 13 C 0.08 1.39 2.47 -68.87 -0.17 1.22 16 14 H 0.09 1.60 7.53 -51.93 -0.39 1.21 16 15 N -0.83 -14.87 8.94 -5.66 -0.05 -14.92 16 16 C -0.14 -2.74 4.65 -26.73 -0.12 -2.87 16 17 C 0.03 0.62 4.74 -27.88 -0.13 0.48 16 18 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 16 19 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 22 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 30 H 0.07 0.47 4.86 -51.93 -0.25 0.22 16 31 H 0.05 0.34 8.07 -51.93 -0.42 -0.08 16 32 H 0.05 0.41 7.25 -51.93 -0.38 0.03 16 33 H 0.06 0.71 7.90 -51.93 -0.41 0.30 16 34 H 0.08 1.22 6.54 -51.93 -0.34 0.88 16 35 H 0.08 0.61 6.55 -51.93 -0.34 0.27 16 36 H 0.08 0.64 6.11 -51.93 -0.32 0.32 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.09 1.12 6.30 -51.93 -0.33 0.79 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.35 6.25 8.58 -39.29 -0.34 5.91 16 42 H 0.35 6.29 7.55 -39.30 -0.30 5.99 16 43 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.06 1.10 6.99 -51.93 -0.36 0.73 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 47 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 358.09 15.07 5.40 5.40 Total: -1.00 -30.87 358.09 -8.81 -39.68 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -8.29 Total: 8.53 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.59 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.19 Total: -49.53 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.08 Total: -10.74 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.87 -8.81 -39.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424081971.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.619 kcal (2) G-P(sol) polarization free energy of solvation -30.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds