Wall clock time and date at job start Tue Mar 31 2020 05:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.46933 * 2 1 4 4 C 1.52998 * 109.47430 * 119.99815 * 2 1 3 5 5 C 1.52998 * 109.47349 * 172.31086 * 4 2 1 6 6 H 1.08997 * 109.87530 * 306.32611 * 5 4 2 7 7 C 1.54330 * 109.88241 * 67.33923 * 5 4 2 8 8 C 1.55153 * 102.94257 * 141.61143 * 7 5 4 9 9 C 1.54908 * 101.58335 * 324.49763 * 8 7 5 10 10 N 1.47022 * 109.88438 * 185.30274 * 5 4 2 11 11 C 1.34782 * 125.64507 * 61.60916 * 10 5 4 12 12 O 1.21280 * 119.99873 * 355.04291 * 11 10 5 13 13 C 1.50701 * 119.99932 * 175.03990 * 11 10 5 14 14 H 1.08996 * 109.47069 * 39.99604 * 13 11 10 15 15 N 1.46896 * 109.47091 * 160.00262 * 13 11 10 16 16 C 1.52999 * 109.46888 * 279.99947 * 13 11 10 17 17 C 1.53003 * 109.47117 * 174.99988 * 16 13 11 18 18 C 1.50703 * 109.47216 * 180.02562 * 17 16 13 19 19 H 1.07996 * 119.99597 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99538 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00289 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99491 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46952 * 89.99929 * 22 20 18 24 24 H 1.48500 * 109.47099 * 209.99602 * 22 20 18 25 25 H 1.48499 * 109.47362 * 330.00183 * 22 20 18 26 26 H 1.09000 * 109.47582 * 60.00123 * 1 2 3 27 27 H 1.09004 * 109.46691 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47383 * 299.99959 * 1 2 3 29 29 H 1.09004 * 109.47702 * 240.00073 * 2 1 3 30 30 H 1.09001 * 109.47334 * 193.58824 * 3 2 1 31 31 H 1.08998 * 109.46946 * 313.59115 * 3 2 1 32 32 H 1.09002 * 109.47316 * 73.58760 * 3 2 1 33 33 H 1.09000 * 109.47265 * 292.30960 * 4 2 1 34 34 H 1.08995 * 109.46804 * 52.30846 * 4 2 1 35 35 H 1.09003 * 110.71910 * 259.97387 * 7 5 4 36 36 H 1.08999 * 110.71826 * 23.24815 * 7 5 4 37 37 H 1.09002 * 111.00663 * 82.57293 * 8 7 5 38 38 H 1.09001 * 111.00538 * 206.42335 * 8 7 5 39 39 H 1.08998 * 110.36624 * 155.85157 * 9 8 7 40 40 H 1.09006 * 110.36562 * 278.06279 * 9 8 7 41 41 H 1.00896 * 111.00188 * 59.99572 * 15 13 11 42 42 H 1.00892 * 111.00142 * 183.95519 * 15 13 11 43 43 H 1.08998 * 109.47590 * 295.00106 * 16 13 11 44 44 H 1.08999 * 109.47183 * 54.99966 * 16 13 11 45 45 H 1.08998 * 109.46987 * 300.00488 * 17 16 13 46 46 H 1.08999 * 109.47112 * 59.99935 * 17 16 13 47 47 H 0.96998 * 119.99382 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5578 -0.8905 1.1565 6 1 3.8195 -1.3789 0.2178 7 6 4.2458 0.4884 1.2402 8 6 5.5080 0.1957 2.0937 9 6 4.9732 -0.8673 3.0855 10 7 4.0416 -1.6927 2.2895 11 6 3.6914 -2.9667 2.5562 12 8 2.8459 -3.5168 1.8830 13 6 4.3506 -3.7075 3.6910 14 1 4.4759 -3.0351 4.5397 15 7 3.5097 -4.8449 4.0873 16 6 5.7200 -4.2188 3.2390 17 6 6.4414 -4.8616 4.4253 18 6 7.7905 -5.3647 3.9802 19 1 8.1022 -5.2382 2.9540 20 6 8.6265 -5.9864 4.8832 21 7 8.2470 -6.1400 6.1330 22 14 10.2984 -6.6107 4.3313 23 1 11.3106 -5.5389 4.5099 24 1 10.6795 -7.7921 5.1464 25 1 10.2344 -6.9972 2.8989 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 3.1028 1.4522 -0.2414 31 1 1.4929 2.0212 -0.7443 32 1 1.8872 1.8819 0.9858 33 1 1.7934 -0.1341 2.1339 34 1 1.5687 -1.7014 1.3207 35 1 4.5249 0.8411 0.2473 36 1 3.6012 1.2112 1.7404 37 1 6.3097 -0.2125 1.4783 38 1 5.8392 1.0904 2.6210 39 1 5.7921 -1.4793 3.4636 40 1 4.4479 -0.3861 3.9106 41 1 3.3785 -5.4832 3.3171 42 1 3.8978 -5.3197 4.8884 43 1 5.5891 -4.9585 2.4492 44 1 6.3125 -3.3854 2.8616 45 1 6.5723 -4.1219 5.2151 46 1 5.8488 -5.6950 4.8027 47 1 8.8354 -6.5771 6.7682 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424081971.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:54 Heat of formation + Delta-G solvation = -80.671960 kcal Electronic energy + Delta-G solvation = -23264.656767 eV Core-core repulsion = 20059.324453 eV Total energy + Delta-G solvation = -3205.332314 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.47127 -39.18260 -37.07835 -36.71804 -34.85536 -32.61028 -31.72036 -31.05517 -28.47453 -27.92576 -26.61264 -25.83484 -23.60977 -22.34654 -21.52044 -21.05754 -19.96942 -18.81920 -18.22572 -17.41038 -16.53449 -16.37372 -16.08399 -15.83739 -15.52311 -15.27794 -14.86305 -14.78488 -14.64348 -14.19868 -14.08399 -13.95976 -13.54046 -13.40982 -13.34511 -12.93240 -12.88393 -12.73862 -12.67993 -12.51671 -12.29803 -11.86537 -11.82795 -11.72466 -11.67211 -11.48401 -11.36123 -11.32242 -11.24761 -10.64943 -10.57153 -9.71458 -9.60321 -8.22656 -6.33407 1.38778 1.39780 1.50370 1.58517 1.94460 2.39056 3.10826 3.41188 3.65842 3.71902 3.78788 3.87044 4.04888 4.06484 4.09777 4.18289 4.22612 4.38029 4.46236 4.57277 4.60762 4.71434 4.76514 4.79702 4.82405 4.89060 4.91464 4.97176 5.04368 5.07375 5.10773 5.15816 5.22496 5.30830 5.40982 5.43867 5.49183 5.52716 5.55593 5.62056 5.78300 6.03787 6.19221 6.43608 6.50169 6.81331 7.16339 7.35798 8.88182 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027066 B = 0.003582 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.270627 B = 7815.651362 C = 8392.712143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.156 4.156 4 C -0.118 4.118 5 C 0.132 3.868 6 H 0.055 0.945 7 C -0.118 4.118 8 C -0.129 4.129 9 C 0.084 3.916 10 N -0.616 5.616 11 C 0.538 3.462 12 O -0.570 6.570 13 C 0.086 3.914 14 H 0.102 0.898 15 N -0.830 5.830 16 C -0.117 4.117 17 C 0.033 3.967 18 C -0.546 4.546 19 H 0.053 0.947 20 C 0.006 3.994 21 N -0.926 5.926 22 Si 0.960 3.040 23 H -0.270 1.270 24 H -0.282 1.282 25 H -0.269 1.269 26 H 0.067 0.933 27 H 0.038 0.962 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.041 0.959 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.343 0.657 42 H 0.353 0.647 43 H 0.041 0.959 44 H 0.063 0.937 45 H 0.002 0.998 46 H 0.002 0.998 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.079 18.455 -9.923 22.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 C -0.212 4.212 4 C -0.156 4.156 5 C 0.029 3.971 6 H 0.073 0.927 7 C -0.155 4.155 8 C -0.167 4.167 9 C -0.038 4.038 10 N -0.350 5.350 11 C 0.326 3.674 12 O -0.449 6.449 13 C -0.030 4.030 14 H 0.120 0.880 15 N -0.361 5.361 16 C -0.157 4.157 17 C -0.004 4.004 18 C -0.584 4.584 19 H 0.072 0.928 20 C -0.192 4.192 21 N -0.566 5.566 22 Si 0.785 3.215 23 H -0.195 1.195 24 H -0.208 1.208 25 H -0.193 1.193 26 H 0.086 0.914 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.091 0.909 38 H 0.129 0.871 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.156 0.844 42 H 0.168 0.832 43 H 0.060 0.940 44 H 0.081 0.919 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.070 18.559 -9.951 23.342 hybrid contribution 1.606 -1.639 -0.066 2.296 sum -8.464 16.920 -10.017 21.407 Atomic orbital electron populations 1.21823 0.95084 1.01083 1.02265 1.21024 0.95915 0.97359 0.96658 1.22286 1.02608 0.94118 1.02215 1.21945 0.94634 1.00168 0.98899 1.21768 0.94400 0.92474 0.88468 0.92654 1.23116 0.96168 0.94080 1.02142 1.22846 0.97649 0.98816 0.97361 1.22725 0.92490 0.93283 0.95330 1.48689 1.46009 1.11347 1.28907 1.20407 0.81301 0.80708 0.84954 1.90595 1.33855 1.68113 1.52355 1.21346 0.91058 0.94404 0.96149 0.87997 1.58750 1.51887 1.13683 1.11794 1.22098 0.94517 0.99884 0.99204 1.18939 0.94044 0.94631 0.92771 1.21588 1.02461 1.38227 0.96076 0.92823 1.25865 1.02354 0.96055 0.94948 1.70062 1.38423 1.44061 1.04038 0.85527 0.79572 0.78080 0.78366 1.19507 1.20760 1.19316 0.91418 0.94248 0.92497 0.91969 0.90336 0.92276 0.92084 0.91711 0.94010 0.87750 0.88362 0.90947 0.87063 0.90985 0.89844 0.84369 0.83229 0.94042 0.91861 0.97951 0.98013 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.14 71.98 0.66 -1.83 16 2 C -0.09 -1.60 2.89 -10.80 -0.03 -1.63 16 3 C -0.16 -1.87 7.72 71.98 0.56 -1.31 16 4 C -0.12 -2.74 4.36 30.59 0.13 -2.60 16 5 C 0.13 3.03 2.91 45.34 0.13 3.16 16 6 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 7 C -0.12 -1.66 4.44 31.78 0.14 -1.52 16 8 C -0.13 -1.96 7.08 31.98 0.23 -1.74 16 9 C 0.08 1.83 6.45 86.79 0.56 2.39 16 10 N -0.62 -17.28 3.08 -787.23 -2.42 -19.71 16 11 C 0.54 19.23 6.92 87.66 0.61 19.83 16 12 O -0.57 -23.81 15.04 -3.03 -0.05 -23.86 16 13 C 0.09 3.10 2.47 44.17 0.11 3.21 16 14 H 0.10 3.51 7.53 -2.39 -0.02 3.49 16 15 N -0.83 -30.53 8.94 -171.81 -1.54 -32.07 16 16 C -0.12 -4.80 4.65 30.59 0.14 -4.66 16 17 C 0.03 1.66 4.74 29.85 0.14 1.81 16 18 C -0.55 -30.26 9.11 25.60 0.23 -30.03 16 19 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 20 C 0.01 0.36 5.46 84.65 0.46 0.82 16 21 N -0.93 -54.44 13.29 21.45 0.28 -54.16 16 22 Si 0.96 43.44 29.54 68.60 2.03 45.46 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 1.18 8.12 -2.38 -0.02 1.16 16 30 H 0.08 0.78 4.86 -2.39 -0.01 0.77 16 31 H 0.06 0.63 8.07 -2.39 -0.02 0.61 16 32 H 0.06 0.68 7.25 -2.39 -0.02 0.67 16 33 H 0.06 1.43 7.90 -2.39 -0.02 1.41 16 34 H 0.04 1.30 6.54 -2.39 -0.02 1.29 16 35 H 0.10 1.10 6.55 -2.39 -0.02 1.08 16 36 H 0.10 1.13 6.11 -2.39 -0.01 1.11 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 38 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.80 6.30 -2.39 -0.02 1.79 16 40 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 41 H 0.34 12.88 8.58 -89.70 -0.77 12.12 16 42 H 0.35 12.97 7.55 -89.70 -0.68 12.29 16 43 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.06 2.48 6.99 -2.39 -0.02 2.46 16 45 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 46 H 0.00 0.08 6.87 -2.39 -0.02 0.07 16 47 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -67.43 358.09 1.89 -65.54 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: -0.49 Total: 32.89 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 4.07 Total: -14.10 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -3.67 Total: -105.94 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.05 Total: -23.86 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -67.43 1.89 -65.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424081971.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.132 kcal (2) G-P(sol) polarization free energy of solvation -67.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds