Wall clock time and date at job start Tue Mar 31 2020 05:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47703 * 2 1 4 4 C 1.53011 * 109.46911 * 119.99901 * 2 1 3 5 5 C 1.53003 * 109.47030 * 174.03143 * 4 2 1 6 6 H 1.09004 * 109.99619 * 56.10140 * 5 4 2 7 7 C 1.54328 * 109.88177 * 295.00947 * 5 4 2 8 8 C 1.55158 * 102.93856 * 218.38980 * 7 5 4 9 9 C 1.54691 * 101.67825 * 35.33745 * 8 7 5 10 10 N 1.47017 * 109.87810 * 177.19861 * 5 4 2 11 11 C 1.34775 * 125.65001 * 298.31888 * 10 5 4 12 12 O 1.21272 * 120.00266 * 354.84739 * 11 10 5 13 13 C 1.50706 * 119.99670 * 174.84533 * 11 10 5 14 14 H 1.08998 * 109.46932 * 319.99735 * 13 11 10 15 15 N 1.46903 * 109.46832 * 200.00414 * 13 11 10 16 16 C 1.52999 * 109.47255 * 80.00193 * 13 11 10 17 17 C 1.52997 * 109.47146 * 184.99744 * 16 13 11 18 18 C 1.50701 * 109.47287 * 180.02562 * 17 16 13 19 19 H 1.08000 * 119.99640 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00252 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99826 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00146 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47203 * 179.97438 * 22 20 18 24 24 H 1.48502 * 109.47017 * 299.99683 * 22 20 18 25 25 H 1.48498 * 109.47085 * 59.99718 * 22 20 18 26 26 H 1.08998 * 109.46946 * 300.00360 * 1 2 3 27 27 H 1.09001 * 109.46864 * 60.00484 * 1 2 3 28 28 H 1.08997 * 109.47129 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47353 * 239.99283 * 2 1 3 30 30 H 1.08993 * 109.47151 * 55.62743 * 3 2 1 31 31 H 1.09000 * 109.47186 * 175.63349 * 3 2 1 32 32 H 1.09009 * 109.46674 * 295.62761 * 3 2 1 33 33 H 1.09002 * 109.46675 * 54.03441 * 4 2 1 34 34 H 1.08993 * 109.46787 * 294.03512 * 4 2 1 35 35 H 1.08993 * 110.72054 * 336.75138 * 7 5 4 36 36 H 1.08995 * 110.71701 * 99.85335 * 7 5 4 37 37 H 1.08993 * 111.00238 * 153.57937 * 8 7 5 38 38 H 1.09000 * 111.00480 * 277.38843 * 8 7 5 39 39 H 1.09004 * 110.38827 * 204.36661 * 9 8 7 40 40 H 1.08993 * 110.23788 * 82.10904 * 9 8 7 41 41 H 1.00901 * 110.99846 * 176.04568 * 15 13 11 42 42 H 1.00901 * 110.99761 * 299.99545 * 15 13 11 43 43 H 1.08999 * 109.46947 * 65.00132 * 16 13 11 44 44 H 1.08997 * 109.47325 * 304.99925 * 16 13 11 45 45 H 1.09005 * 109.47130 * 60.00025 * 17 16 13 46 46 H 1.08997 * 109.47156 * 300.00285 * 17 16 13 47 47 H 0.97001 * 120.00117 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2494 5 6 3.5626 -0.8525 1.1766 6 1 4.0160 0.1309 1.0518 7 6 3.9550 -1.7650 -0.0045 8 6 5.1512 -2.5736 0.5636 9 6 4.7359 -2.7492 2.0433 10 7 4.0691 -1.4846 2.4036 11 6 3.9489 -0.9874 3.6505 12 8 3.4665 0.1120 3.8211 13 6 4.4141 -1.7979 4.8329 14 1 4.1473 -2.8442 4.6837 15 7 3.7688 -1.2974 6.0540 16 6 5.9328 -1.6735 4.9708 17 6 6.4201 -2.5931 6.0922 18 6 7.9159 -2.4701 6.2285 19 1 8.4640 -1.8024 5.5803 20 6 8.5846 -3.2099 7.1806 21 7 7.9170 -4.0226 7.9702 22 14 10.4385 -3.0568 7.3500 23 1 10.9115 -3.9495 8.4384 24 1 11.0862 -3.4475 6.0721 25 1 10.7916 -1.6514 7.6745 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5140 -0.8900 30 1 1.6143 1.9784 0.8482 31 1 3.1273 1.4433 0.0782 32 1 1.7422 1.9331 -0.9267 33 1 1.5920 -1.7135 1.3043 34 1 1.7664 -0.1495 2.1360 35 1 3.1318 -2.4286 -0.2691 36 1 4.2617 -1.1709 -0.8653 37 1 5.2428 -3.5383 0.0645 38 1 6.0786 -2.0062 0.4856 39 1 5.6150 -2.9060 2.6684 40 1 4.0436 -3.5850 2.1440 41 1 4.0143 -1.8648 6.8513 42 1 4.0008 -0.3286 6.2144 43 1 6.1927 -0.6419 5.2081 44 1 6.4076 -1.9612 4.0328 45 1 6.1601 -3.6248 5.8549 46 1 5.9452 -2.3054 7.0302 47 1 8.3873 -4.5428 8.6403 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424081972.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:58 Heat of formation + Delta-G solvation = -69.068416 kcal Electronic energy + Delta-G solvation = -23246.496133 eV Core-core repulsion = 20041.666987 eV Total energy + Delta-G solvation = -3204.829146 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.27045 -37.89904 -35.95035 -35.39855 -32.84475 -31.54372 -30.22543 -29.85875 -27.30882 -26.52110 -25.70273 -24.18962 -22.35669 -21.49335 -20.38150 -19.63569 -18.72025 -17.31422 -16.52921 -16.22004 -15.39331 -14.95915 -14.58012 -14.43300 -14.22808 -14.14653 -13.75756 -13.51310 -13.38508 -13.10371 -12.98145 -12.56750 -12.40400 -12.27930 -11.96298 -11.82055 -11.65995 -11.41108 -11.21706 -11.12134 -10.98422 -10.90505 -10.78820 -10.70602 -10.66872 -10.49520 -9.94307 -9.84612 -9.27408 -9.14829 -8.47444 -8.43200 -8.14010 -6.08587 -4.11852 2.97849 3.12171 3.28081 3.33029 3.35442 4.37801 4.40605 4.50968 4.65358 4.80460 4.82965 4.92151 5.06409 5.21040 5.26031 5.27418 5.28134 5.34511 5.48799 5.55232 5.59576 5.62395 5.65572 5.71840 5.77052 5.78130 5.79578 5.82409 5.90211 5.98073 6.06746 6.10632 6.28318 6.29659 6.34160 6.52421 6.59338 6.88475 7.47609 7.52784 7.62439 7.76454 7.88403 7.93431 8.31102 8.51175 8.93876 9.52976 11.02267 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027220 B = 0.003578 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.390975 B = 7823.923908 C = 8307.367482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.125 4.125 5 C 0.137 3.863 6 H 0.075 0.925 7 C -0.127 4.127 8 C -0.133 4.133 9 C 0.092 3.908 10 N -0.619 5.619 11 C 0.542 3.458 12 O -0.536 6.536 13 C 0.078 3.922 14 H 0.094 0.906 15 N -0.831 5.831 16 C -0.138 4.138 17 C 0.026 3.974 18 C -0.524 4.524 19 H 0.054 0.946 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.287 1.287 24 H -0.276 1.276 25 H -0.277 1.277 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.354 0.646 42 H 0.345 0.655 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.700 3.478 -17.533 20.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.163 4.163 5 C 0.034 3.966 6 H 0.093 0.907 7 C -0.165 4.165 8 C -0.171 4.171 9 C -0.031 4.031 10 N -0.354 5.354 11 C 0.332 3.668 12 O -0.412 6.412 13 C -0.037 4.037 14 H 0.112 0.888 15 N -0.363 5.363 16 C -0.178 4.178 17 C -0.012 4.012 18 C -0.563 4.563 19 H 0.072 0.928 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.720 3.280 23 H -0.212 1.212 24 H -0.202 1.202 25 H -0.202 1.202 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.169 0.831 42 H 0.158 0.842 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.645 3.816 -17.544 21.400 hybrid contribution 2.103 0.051 0.501 2.163 sum -9.542 3.868 -17.043 19.912 Atomic orbital electron populations 1.21828 0.95300 1.01565 1.01664 1.21073 0.95646 0.96415 0.98001 1.21889 1.01301 0.95951 1.01469 1.21995 0.94556 1.00854 0.98886 1.21587 0.94213 0.96874 0.83954 0.90747 1.22724 0.98436 0.98334 0.97029 1.22737 0.98451 1.01059 0.94884 1.22416 0.97854 0.86531 0.96278 1.48553 1.57756 1.23308 1.05829 1.20559 0.77240 0.86410 0.82641 1.90616 1.45012 1.20670 1.84901 1.21444 0.94765 0.98303 0.89170 0.88774 1.58744 1.64282 1.08254 1.04982 1.22412 0.91732 1.01741 1.01918 1.19090 0.96071 0.93896 0.92100 1.21143 0.92478 1.24691 1.17943 0.92797 1.25007 0.98424 0.95188 0.95648 1.69940 1.35790 1.26597 1.20868 0.86646 0.85537 0.78044 0.77726 1.21211 1.20206 1.20235 0.92636 0.92864 0.92844 0.91238 0.92508 0.92498 0.93062 0.91988 0.90469 0.90535 0.90341 0.89818 0.90529 0.89320 0.91446 0.83103 0.84184 0.92742 0.92471 0.96365 0.96424 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.19 37.16 0.34 -0.92 16 2 C -0.09 -0.86 2.82 -90.62 -0.26 -1.11 16 3 C -0.15 -1.42 9.07 37.15 0.34 -1.09 16 4 C -0.12 -1.46 4.12 -26.72 -0.11 -1.57 16 5 C 0.14 1.65 2.74 -66.95 -0.18 1.46 16 6 H 0.07 0.98 6.38 -51.93 -0.33 0.65 16 7 C -0.13 -1.13 5.41 -24.89 -0.13 -1.26 16 8 C -0.13 -1.24 7.07 -24.70 -0.17 -1.41 16 9 C 0.09 1.10 6.38 -2.64 -0.02 1.08 16 10 N -0.62 -8.86 3.07 -163.15 -0.50 -9.36 16 11 C 0.54 9.55 6.83 -10.98 -0.08 9.47 16 12 O -0.54 -10.84 15.45 5.56 0.09 -10.75 16 13 C 0.08 1.39 2.54 -68.86 -0.18 1.22 16 14 H 0.09 1.62 7.78 -51.93 -0.40 1.22 16 15 N -0.83 -14.87 8.94 -5.65 -0.05 -14.92 16 16 C -0.14 -2.77 4.64 -26.73 -0.12 -2.90 16 17 C 0.03 0.62 4.74 -27.88 -0.13 0.49 16 18 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 16 19 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.02 13.29 55.43 0.74 -25.29 16 22 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.57 7.21 -51.92 -0.37 0.19 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.57 6.34 -51.93 -0.33 0.24 16 32 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.06 0.71 8.07 -51.93 -0.42 0.29 16 34 H 0.08 1.15 6.95 -51.93 -0.36 0.78 16 35 H 0.08 0.61 7.79 -51.93 -0.40 0.21 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.09 1.18 5.80 -51.93 -0.30 0.88 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.35 6.30 7.55 -39.29 -0.30 6.00 16 42 H 0.34 6.25 8.58 -39.29 -0.34 5.91 16 43 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.06 1.10 6.19 -51.93 -0.32 0.78 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 47 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 362.85 15.07 5.47 5.47 Total: -1.00 -30.79 362.85 -8.82 -39.62 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -8.43 Total: 8.68 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -1.11 Total: -9.68 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: 0.19 Total: -49.57 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.79 -8.82 -39.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424081972.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.452 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds