Wall clock time and date at job start Tue Mar 31 2020 05:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47703 * 2 1 4 4 C 1.53011 * 109.46911 * 119.99901 * 2 1 3 5 5 C 1.53003 * 109.47030 * 174.03143 * 4 2 1 6 6 H 1.09004 * 109.99619 * 56.10140 * 5 4 2 7 7 C 1.54328 * 109.88177 * 295.00947 * 5 4 2 8 8 C 1.55158 * 102.93856 * 218.38980 * 7 5 4 9 9 C 1.54691 * 101.67825 * 35.33745 * 8 7 5 10 10 N 1.47017 * 109.87810 * 177.19861 * 5 4 2 11 11 C 1.34775 * 125.65001 * 298.31888 * 10 5 4 12 12 O 1.21272 * 120.00266 * 354.84739 * 11 10 5 13 13 C 1.50706 * 119.99670 * 174.84533 * 11 10 5 14 14 H 1.08998 * 109.46932 * 319.99735 * 13 11 10 15 15 N 1.46903 * 109.46832 * 200.00414 * 13 11 10 16 16 C 1.52999 * 109.47255 * 80.00193 * 13 11 10 17 17 C 1.52997 * 109.47146 * 184.99744 * 16 13 11 18 18 C 1.50701 * 109.47287 * 180.02562 * 17 16 13 19 19 H 1.08000 * 119.99640 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00252 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99826 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00146 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47203 * 179.97438 * 22 20 18 24 24 H 1.48502 * 109.47017 * 299.99683 * 22 20 18 25 25 H 1.48498 * 109.47085 * 59.99718 * 22 20 18 26 26 H 1.08998 * 109.46946 * 300.00360 * 1 2 3 27 27 H 1.09001 * 109.46864 * 60.00484 * 1 2 3 28 28 H 1.08997 * 109.47129 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47353 * 239.99283 * 2 1 3 30 30 H 1.08993 * 109.47151 * 55.62743 * 3 2 1 31 31 H 1.09000 * 109.47186 * 175.63349 * 3 2 1 32 32 H 1.09009 * 109.46674 * 295.62761 * 3 2 1 33 33 H 1.09002 * 109.46675 * 54.03441 * 4 2 1 34 34 H 1.08993 * 109.46787 * 294.03512 * 4 2 1 35 35 H 1.08993 * 110.72054 * 336.75138 * 7 5 4 36 36 H 1.08995 * 110.71701 * 99.85335 * 7 5 4 37 37 H 1.08993 * 111.00238 * 153.57937 * 8 7 5 38 38 H 1.09000 * 111.00480 * 277.38843 * 8 7 5 39 39 H 1.09004 * 110.38827 * 204.36661 * 9 8 7 40 40 H 1.08993 * 110.23788 * 82.10904 * 9 8 7 41 41 H 1.00901 * 110.99846 * 176.04568 * 15 13 11 42 42 H 1.00901 * 110.99761 * 299.99545 * 15 13 11 43 43 H 1.08999 * 109.46947 * 65.00132 * 16 13 11 44 44 H 1.08997 * 109.47325 * 304.99925 * 16 13 11 45 45 H 1.09005 * 109.47130 * 60.00025 * 17 16 13 46 46 H 1.08997 * 109.47156 * 300.00285 * 17 16 13 47 47 H 0.97001 * 120.00117 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2494 5 6 3.5626 -0.8525 1.1766 6 1 4.0160 0.1309 1.0518 7 6 3.9550 -1.7650 -0.0045 8 6 5.1512 -2.5736 0.5636 9 6 4.7359 -2.7492 2.0433 10 7 4.0691 -1.4846 2.4036 11 6 3.9489 -0.9874 3.6505 12 8 3.4665 0.1120 3.8211 13 6 4.4141 -1.7979 4.8329 14 1 4.1473 -2.8442 4.6837 15 7 3.7688 -1.2974 6.0540 16 6 5.9328 -1.6735 4.9708 17 6 6.4201 -2.5931 6.0922 18 6 7.9159 -2.4701 6.2285 19 1 8.4640 -1.8024 5.5803 20 6 8.5846 -3.2099 7.1806 21 7 7.9170 -4.0226 7.9702 22 14 10.4385 -3.0568 7.3500 23 1 10.9115 -3.9495 8.4384 24 1 11.0862 -3.4475 6.0721 25 1 10.7916 -1.6514 7.6745 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5140 -0.8900 30 1 1.6143 1.9784 0.8482 31 1 3.1273 1.4433 0.0782 32 1 1.7422 1.9331 -0.9267 33 1 1.5920 -1.7135 1.3043 34 1 1.7664 -0.1495 2.1360 35 1 3.1318 -2.4286 -0.2691 36 1 4.2617 -1.1709 -0.8653 37 1 5.2428 -3.5383 0.0645 38 1 6.0786 -2.0062 0.4856 39 1 5.6150 -2.9060 2.6684 40 1 4.0436 -3.5850 2.1440 41 1 4.0143 -1.8648 6.8513 42 1 4.0008 -0.3286 6.2144 43 1 6.1927 -0.6419 5.2081 44 1 6.4076 -1.9612 4.0328 45 1 6.1601 -3.6248 5.8549 46 1 5.9452 -2.3054 7.0302 47 1 8.3873 -4.5428 8.6403 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424081972.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:57 Heat of formation + Delta-G solvation = -88.262607 kcal Electronic energy + Delta-G solvation = -23247.328456 eV Core-core repulsion = 20041.666987 eV Total energy + Delta-G solvation = -3205.661469 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.45431 -39.07719 -37.09358 -36.76027 -34.85238 -32.59115 -31.72230 -31.09685 -28.19685 -28.03749 -26.61749 -25.87928 -23.62830 -22.44801 -21.92846 -20.54474 -19.95344 -18.79015 -18.19743 -17.52611 -16.57944 -16.41031 -16.03461 -15.84578 -15.55486 -15.30390 -14.83560 -14.66419 -14.48378 -14.38887 -14.03044 -13.94070 -13.72709 -13.46755 -13.18144 -12.97744 -12.92878 -12.68392 -12.63499 -12.52868 -12.20259 -12.02809 -11.86032 -11.76241 -11.72764 -11.56337 -11.44694 -11.34377 -11.33023 -10.67368 -10.56441 -9.74018 -9.55596 -8.22213 -6.33104 1.39320 1.41119 1.49097 1.58719 1.95460 2.39310 3.11175 3.40900 3.65172 3.71829 3.82639 3.86512 4.03417 4.07024 4.07776 4.16655 4.21207 4.36462 4.43616 4.50926 4.58197 4.74651 4.77602 4.79744 4.82642 4.91240 4.94844 5.01061 5.01406 5.05029 5.07736 5.12576 5.15061 5.29559 5.37348 5.43280 5.44726 5.47856 5.57970 5.62596 5.78631 6.03631 6.19402 6.43450 6.50387 6.81533 7.16755 7.36036 8.88429 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027220 B = 0.003578 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.390975 B = 7823.923908 C = 8307.367482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 C -0.148 4.148 4 C -0.117 4.117 5 C 0.129 3.871 6 H 0.061 0.939 7 C -0.116 4.116 8 C -0.125 4.125 9 C 0.082 3.918 10 N -0.616 5.616 11 C 0.538 3.462 12 O -0.570 6.570 13 C 0.086 3.914 14 H 0.102 0.898 15 N -0.830 5.830 16 C -0.120 4.120 17 C 0.034 3.966 18 C -0.546 4.546 19 H 0.054 0.946 20 C 0.006 3.994 21 N -0.926 5.926 22 Si 0.959 3.041 23 H -0.282 1.282 24 H -0.266 1.266 25 H -0.272 1.272 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.036 0.964 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.038 0.962 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.353 0.647 42 H 0.343 0.657 43 H 0.041 0.959 44 H 0.065 0.935 45 H 0.002 0.998 46 H 0.001 0.999 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.222 2.868 -20.116 22.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.206 4.206 4 C -0.156 4.156 5 C 0.026 3.974 6 H 0.079 0.921 7 C -0.153 4.153 8 C -0.163 4.163 9 C -0.040 4.040 10 N -0.349 5.349 11 C 0.327 3.673 12 O -0.449 6.449 13 C -0.029 4.029 14 H 0.120 0.880 15 N -0.361 5.361 16 C -0.160 4.160 17 C -0.004 4.004 18 C -0.584 4.584 19 H 0.072 0.928 20 C -0.192 4.192 21 N -0.566 5.566 22 Si 0.784 3.216 23 H -0.207 1.207 24 H -0.190 1.190 25 H -0.197 1.197 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.168 0.832 42 H 0.156 0.844 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.020 0.980 46 H 0.019 0.981 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.166 3.189 -20.169 23.273 hybrid contribution 1.923 0.229 1.305 2.335 sum -9.243 3.418 -18.864 21.283 Atomic orbital electron populations 1.21824 0.94732 1.02018 1.01701 1.21070 0.96085 0.95948 0.97443 1.21885 1.00778 0.96307 1.01582 1.21912 0.94447 1.00622 0.98597 1.21835 0.94252 0.97101 0.84207 0.92133 1.22736 0.98720 0.97964 0.95909 1.22749 0.98326 1.02530 0.92715 1.22659 0.97437 0.85800 0.98113 1.48628 1.56762 1.24046 1.05513 1.20397 0.77355 0.85934 0.83654 1.90598 1.46787 1.21929 1.85607 1.21348 0.93064 0.98898 0.89636 0.88042 1.58754 1.64118 1.08141 1.05088 1.22147 0.93467 0.99718 1.00618 1.18933 0.94865 0.93767 0.92804 1.21567 0.94074 1.24697 1.18092 0.92757 1.25867 1.03308 0.94776 0.95268 1.70056 1.37699 1.27387 1.21463 0.85586 0.79735 0.78151 0.78110 1.20749 1.19033 1.19729 0.94165 0.91292 0.92192 0.88889 0.94484 0.93117 0.91157 0.91664 0.94359 0.88800 0.88181 0.87089 0.90907 0.90933 0.89997 0.83230 0.84370 0.94010 0.91597 0.97961 0.98076 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.19 71.98 0.66 -1.60 16 2 C -0.09 -1.45 2.82 -10.79 -0.03 -1.48 16 3 C -0.15 -2.70 9.07 71.98 0.65 -2.04 16 4 C -0.12 -2.66 4.12 30.60 0.13 -2.54 16 5 C 0.13 2.94 2.74 45.34 0.12 3.06 16 6 H 0.06 1.57 6.38 -2.38 -0.02 1.55 16 7 C -0.12 -1.64 5.41 31.78 0.17 -1.47 16 8 C -0.13 -1.94 7.07 31.91 0.23 -1.71 16 9 C 0.08 1.83 6.38 86.78 0.55 2.38 16 10 N -0.62 -17.32 3.07 -788.47 -2.42 -19.74 16 11 C 0.54 19.26 6.83 87.66 0.60 19.86 16 12 O -0.57 -23.86 15.45 -3.01 -0.05 -23.90 16 13 C 0.09 3.11 2.54 44.17 0.11 3.22 16 14 H 0.10 3.52 7.78 -2.39 -0.02 3.50 16 15 N -0.83 -30.61 8.94 -171.79 -1.54 -32.14 16 16 C -0.12 -4.89 4.64 30.59 0.14 -4.75 16 17 C 0.03 1.67 4.74 29.85 0.14 1.81 16 18 C -0.55 -30.25 9.11 25.60 0.23 -30.01 16 19 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 20 C 0.01 0.36 5.46 84.65 0.46 0.82 16 21 N -0.93 -54.50 13.29 21.45 0.28 -54.22 16 22 Si 0.96 43.38 29.54 68.60 2.03 45.41 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 26 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.09 1.17 7.21 -2.38 -0.02 1.15 16 30 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.97 6.34 -2.39 -0.02 0.96 16 32 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.06 1.41 8.07 -2.39 -0.02 1.39 16 34 H 0.04 1.17 6.95 -2.39 -0.02 1.16 16 35 H 0.09 1.07 7.79 -2.39 -0.02 1.05 16 36 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.87 5.80 -2.38 -0.01 1.85 16 40 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.35 13.00 7.55 -89.69 -0.68 12.33 16 42 H 0.34 12.91 8.58 -89.69 -0.77 12.14 16 43 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.07 2.55 6.19 -2.39 -0.01 2.54 16 45 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 46 H 0.00 0.05 6.87 -2.39 -0.02 0.03 16 47 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -67.37 362.85 1.99 -65.38 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: -0.50 Total: 33.66 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: 4.18 Total: -14.45 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -3.67 Total: -106.10 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.05 Total: -23.90 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -67.37 1.99 -65.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424081972.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.884 kcal (2) G-P(sol) polarization free energy of solvation -67.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds