Wall clock time and date at job start Tue Mar 31 2020 05:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46846 * 2 1 4 4 C 1.53005 * 109.46938 * 119.99306 * 2 1 3 5 5 C 1.53002 * 109.47262 * 173.95188 * 4 2 1 6 6 H 1.08998 * 109.86694 * 56.49071 * 5 4 2 7 7 C 1.54319 * 110.01004 * 295.39355 * 5 4 2 8 8 C 1.55158 * 102.94083 * 218.31687 * 7 5 4 9 9 C 1.54904 * 101.58257 * 35.50288 * 8 7 5 10 10 N 1.47026 * 109.88214 * 177.50582 * 5 4 2 11 11 C 1.34775 * 125.64496 * 298.49407 * 10 5 4 12 12 O 1.21277 * 120.00286 * 355.09542 * 11 10 5 13 13 C 1.50703 * 119.99466 * 175.09408 * 11 10 5 14 14 H 1.09003 * 109.47427 * 39.99946 * 13 11 10 15 15 N 1.46903 * 109.46904 * 159.99686 * 13 11 10 16 16 C 1.52999 * 109.47304 * 279.99669 * 13 11 10 17 17 C 1.53000 * 109.47327 * 174.99917 * 16 13 11 18 18 C 1.50701 * 109.47340 * 180.02562 * 17 16 13 19 19 H 1.08001 * 119.99603 * 0.02562 * 18 17 16 20 20 C 1.37870 * 119.99966 * 180.02562 * 18 17 16 21 21 N 1.31522 * 120.00263 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99986 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47136 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47322 * 119.99913 * 22 20 18 25 25 H 1.48505 * 109.47114 * 239.99955 * 22 20 18 26 26 H 1.08995 * 109.47417 * 300.00077 * 1 2 3 27 27 H 1.09001 * 109.47074 * 60.00498 * 1 2 3 28 28 H 1.09002 * 109.47016 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47583 * 239.99165 * 2 1 3 30 30 H 1.09000 * 109.47012 * 295.53630 * 3 2 1 31 31 H 1.08996 * 109.47466 * 55.54074 * 3 2 1 32 32 H 1.09002 * 109.47066 * 175.54078 * 3 2 1 33 33 H 1.09007 * 109.46789 * 53.95251 * 4 2 1 34 34 H 1.08998 * 109.47089 * 293.95876 * 4 2 1 35 35 H 1.09001 * 110.72322 * 336.67483 * 7 5 4 36 36 H 1.09002 * 110.72322 * 99.77536 * 7 5 4 37 37 H 1.09002 * 111.00401 * 277.43171 * 8 7 5 38 38 H 1.08997 * 111.00733 * 153.58071 * 8 7 5 39 39 H 1.08999 * 110.36698 * 204.15491 * 9 8 7 40 40 H 1.08997 * 110.37108 * 81.82742 * 9 8 7 41 41 H 1.00896 * 111.00223 * 296.05000 * 15 13 11 42 42 H 1.00904 * 110.99508 * 60.00493 * 15 13 11 43 43 H 1.09000 * 109.47229 * 295.00687 * 16 13 11 44 44 H 1.09001 * 109.46625 * 55.00449 * 16 13 11 45 45 H 1.09002 * 109.47096 * 300.00661 * 17 16 13 46 46 H 1.09000 * 109.46839 * 59.99695 * 17 16 13 47 47 H 0.96997 * 120.00094 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5624 -0.8541 1.1758 6 1 4.0149 0.1303 1.0571 7 6 3.9567 -1.7595 -0.0101 8 6 5.1530 -2.5704 0.5545 9 6 4.7316 -2.7574 2.0334 10 7 4.0683 -1.4928 2.3997 11 6 3.9461 -1.0030 3.6493 12 8 3.4580 0.0931 3.8260 13 6 4.4160 -1.8174 4.8270 14 1 5.3523 -2.3151 4.5743 15 7 4.6277 -0.9329 5.9807 16 6 3.3586 -2.8666 5.1760 17 6 3.8876 -3.7732 6.2893 18 6 2.8463 -4.8071 6.6326 19 1 1.9019 -4.8168 6.1088 20 6 3.0994 -5.7404 7.6153 21 7 4.2497 -5.7288 8.2528 22 14 1.8089 -7.0224 8.0404 23 1 0.6116 -6.8220 7.1851 24 1 2.3637 -8.3798 7.8061 25 1 1.4254 -6.8841 9.4684 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.7433 1.9327 -0.9273 31 1 1.6128 1.9789 0.8473 32 1 3.1270 1.4436 0.0799 33 1 1.5908 -1.7128 1.3052 34 1 1.7676 -0.1486 2.1360 35 1 3.1344 -2.4224 -0.2793 36 1 4.2637 -1.1604 -0.8674 37 1 6.0799 -2.0014 0.4814 38 1 5.2460 -3.5321 0.0501 39 1 5.6084 -2.9211 2.6599 40 1 4.0362 -3.5915 2.1272 41 1 5.3673 -0.2713 5.7983 42 1 3.7736 -0.4595 6.2349 43 1 2.4500 -2.3684 5.5141 44 1 3.1371 -3.4666 4.2934 45 1 4.7962 -4.2714 5.9512 46 1 4.1093 -3.1731 7.1718 47 1 4.4276 -6.3852 8.9444 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424081973.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:02 Heat of formation + Delta-G solvation = -68.827570 kcal Electronic energy + Delta-G solvation = -23328.598977 eV Core-core repulsion = 20123.780275 eV Total energy + Delta-G solvation = -3204.818702 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.36304 -38.01405 -35.99142 -35.13301 -32.78252 -31.62184 -30.23733 -30.05476 -27.32836 -26.42248 -25.73615 -24.07619 -22.32416 -21.51309 -20.26671 -19.73760 -18.69312 -17.24837 -16.51671 -16.08038 -15.48676 -15.40638 -15.02786 -14.37352 -14.22375 -13.99678 -13.82220 -13.63238 -13.32349 -13.17411 -12.84906 -12.42637 -12.33178 -12.15289 -11.94438 -11.87258 -11.60574 -11.37909 -11.22430 -11.16088 -10.90640 -10.81384 -10.72749 -10.65092 -10.53195 -10.45628 -10.01235 -9.75765 -9.34641 -8.97163 -8.53625 -8.32882 -8.17686 -5.93002 -3.94973 2.81970 3.10362 3.34148 3.41790 3.45725 4.35184 4.43357 4.50904 4.61403 4.78382 4.80973 4.86489 4.93742 5.09699 5.19401 5.24362 5.30274 5.42554 5.47489 5.48915 5.52914 5.58196 5.62668 5.68402 5.72702 5.77093 5.80204 5.86680 5.88376 5.94486 6.02695 6.08493 6.25161 6.28156 6.46100 6.50417 6.69814 7.10871 7.43863 7.66194 7.77524 7.82513 7.97579 8.14468 8.35131 8.49839 9.13193 9.68179 11.17944 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018391 B = 0.003912 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.090499 B = 7155.033025 C = 7402.958611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.148 4.148 4 C -0.125 4.125 5 C 0.134 3.866 6 H 0.073 0.927 7 C -0.128 4.128 8 C -0.133 4.133 9 C 0.097 3.903 10 N -0.614 5.614 11 C 0.499 3.501 12 O -0.553 6.553 13 C 0.081 3.919 14 H 0.095 0.905 15 N -0.807 5.807 16 C -0.093 4.093 17 C 0.032 3.968 18 C -0.520 4.520 19 H 0.052 0.948 20 C 0.058 3.942 21 N -0.892 5.892 22 Si 0.888 3.112 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.284 1.284 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.333 0.667 42 H 0.347 0.653 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.012 0.988 46 H 0.035 0.965 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.103 9.802 -19.625 21.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.164 4.164 5 C 0.031 3.969 6 H 0.091 0.909 7 C -0.166 4.166 8 C -0.172 4.172 9 C -0.026 4.026 10 N -0.349 5.349 11 C 0.287 3.713 12 O -0.430 6.430 13 C -0.034 4.034 14 H 0.113 0.887 15 N -0.335 5.335 16 C -0.131 4.131 17 C -0.005 4.005 18 C -0.559 4.559 19 H 0.070 0.930 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.716 3.284 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.145 0.855 42 H 0.161 0.839 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.031 0.969 46 H 0.053 0.947 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.123 9.662 -18.866 21.197 hybrid contribution -0.943 -0.045 -0.420 1.034 sum -0.821 9.617 -19.287 21.567 Atomic orbital electron populations 1.21832 0.95215 1.01728 1.01652 1.21070 0.95749 0.96301 0.97990 1.21884 1.01123 0.96042 1.01470 1.21996 0.94488 1.01073 0.98819 1.21616 0.94393 0.96680 0.84230 0.90888 1.22722 0.98509 0.98385 0.96943 1.22786 0.98249 1.01061 0.95058 1.22401 0.97683 0.86861 0.95685 1.48742 1.57203 1.23017 1.05919 1.22449 0.78012 0.86997 0.83831 1.90629 1.45952 1.21449 1.85016 1.21827 1.01492 0.94360 0.85760 0.88697 1.59024 1.12474 1.26825 1.35173 1.21616 0.95601 0.94985 1.00884 1.19013 0.95623 0.92887 0.92999 1.21311 1.01625 1.13679 1.19274 0.92985 1.24987 0.95342 0.97734 0.96256 1.69987 1.22638 1.35915 1.24653 0.86608 0.81949 0.81597 0.78249 1.19871 1.21098 1.21054 0.92636 0.92852 0.92708 0.91219 0.93032 0.92572 0.92641 0.91764 0.90589 0.90371 0.90377 0.90762 0.89710 0.90123 0.90643 0.85537 0.83878 0.93000 0.92924 0.96936 0.94704 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.19 37.16 0.34 -1.00 16 2 C -0.09 -0.87 2.82 -90.62 -0.26 -1.13 16 3 C -0.15 -1.39 9.07 37.16 0.34 -1.05 16 4 C -0.13 -1.51 4.12 -26.73 -0.11 -1.62 16 5 C 0.13 1.56 2.73 -66.95 -0.18 1.38 16 6 H 0.07 0.90 6.39 -51.93 -0.33 0.57 16 7 C -0.13 -1.09 5.40 -24.90 -0.13 -1.22 16 8 C -0.13 -1.12 7.08 -24.58 -0.17 -1.30 16 9 C 0.10 1.10 6.45 -2.53 -0.02 1.08 16 10 N -0.61 -8.41 3.07 -163.02 -0.50 -8.91 16 11 C 0.50 8.32 6.82 -10.98 -0.07 8.24 16 12 O -0.55 -10.50 15.43 5.56 0.09 -10.41 16 13 C 0.08 1.42 2.61 -68.86 -0.18 1.24 16 14 H 0.10 1.59 6.88 -51.93 -0.36 1.23 16 15 N -0.81 -14.12 8.44 -5.65 -0.05 -14.16 16 16 C -0.09 -1.92 4.78 -26.73 -0.13 -2.05 16 17 C 0.03 0.82 4.86 -27.88 -0.14 0.69 16 18 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 19 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 22 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.58 7.20 -51.93 -0.37 0.21 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.53 6.35 -51.93 -0.33 0.20 16 33 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 34 H 0.08 1.15 6.93 -51.93 -0.36 0.79 16 35 H 0.08 0.64 7.80 -51.93 -0.41 0.24 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.91 6.98 -51.93 -0.36 0.54 16 40 H 0.08 0.89 7.95 -51.93 -0.41 0.48 16 41 H 0.33 5.08 9.06 -39.29 -0.36 4.73 16 42 H 0.35 6.16 8.58 -39.29 -0.34 5.82 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.05 1.04 7.76 -51.93 -0.40 0.64 16 45 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 366.79 15.07 5.53 5.53 Total: -1.00 -32.07 366.79 -8.96 -41.03 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -8.62 Total: 6.67 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -1.12 Total: -10.27 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.19 Total: -49.32 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.07 -8.96 -41.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424081973.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.796 kcal (2) G-P(sol) polarization free energy of solvation -32.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds