Wall clock time and date at job start Tue Mar 31 2020 05:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46846 * 2 1 4 4 C 1.53005 * 109.46938 * 119.99306 * 2 1 3 5 5 C 1.53002 * 109.47262 * 173.95188 * 4 2 1 6 6 H 1.08998 * 109.86694 * 56.49071 * 5 4 2 7 7 C 1.54319 * 110.01004 * 295.39355 * 5 4 2 8 8 C 1.55158 * 102.94083 * 218.31687 * 7 5 4 9 9 C 1.54904 * 101.58257 * 35.50288 * 8 7 5 10 10 N 1.47026 * 109.88214 * 177.50582 * 5 4 2 11 11 C 1.34775 * 125.64496 * 298.49407 * 10 5 4 12 12 O 1.21277 * 120.00286 * 355.09542 * 11 10 5 13 13 C 1.50703 * 119.99466 * 175.09408 * 11 10 5 14 14 H 1.09003 * 109.47427 * 39.99946 * 13 11 10 15 15 N 1.46903 * 109.46904 * 159.99686 * 13 11 10 16 16 C 1.52999 * 109.47304 * 279.99669 * 13 11 10 17 17 C 1.53000 * 109.47327 * 174.99917 * 16 13 11 18 18 C 1.50701 * 109.47340 * 180.02562 * 17 16 13 19 19 H 1.08001 * 119.99603 * 0.02562 * 18 17 16 20 20 C 1.37870 * 119.99966 * 180.02562 * 18 17 16 21 21 N 1.31522 * 120.00263 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99986 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47136 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47322 * 119.99913 * 22 20 18 25 25 H 1.48505 * 109.47114 * 239.99955 * 22 20 18 26 26 H 1.08995 * 109.47417 * 300.00077 * 1 2 3 27 27 H 1.09001 * 109.47074 * 60.00498 * 1 2 3 28 28 H 1.09002 * 109.47016 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47583 * 239.99165 * 2 1 3 30 30 H 1.09000 * 109.47012 * 295.53630 * 3 2 1 31 31 H 1.08996 * 109.47466 * 55.54074 * 3 2 1 32 32 H 1.09002 * 109.47066 * 175.54078 * 3 2 1 33 33 H 1.09007 * 109.46789 * 53.95251 * 4 2 1 34 34 H 1.08998 * 109.47089 * 293.95876 * 4 2 1 35 35 H 1.09001 * 110.72322 * 336.67483 * 7 5 4 36 36 H 1.09002 * 110.72322 * 99.77536 * 7 5 4 37 37 H 1.09002 * 111.00401 * 277.43171 * 8 7 5 38 38 H 1.08997 * 111.00733 * 153.58071 * 8 7 5 39 39 H 1.08999 * 110.36698 * 204.15491 * 9 8 7 40 40 H 1.08997 * 110.37108 * 81.82742 * 9 8 7 41 41 H 1.00896 * 111.00223 * 296.05000 * 15 13 11 42 42 H 1.00904 * 110.99508 * 60.00493 * 15 13 11 43 43 H 1.09000 * 109.47229 * 295.00687 * 16 13 11 44 44 H 1.09001 * 109.46625 * 55.00449 * 16 13 11 45 45 H 1.09002 * 109.47096 * 300.00661 * 17 16 13 46 46 H 1.09000 * 109.46839 * 59.99695 * 17 16 13 47 47 H 0.96997 * 120.00094 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5624 -0.8541 1.1758 6 1 4.0149 0.1303 1.0571 7 6 3.9567 -1.7595 -0.0101 8 6 5.1530 -2.5704 0.5545 9 6 4.7316 -2.7574 2.0334 10 7 4.0683 -1.4928 2.3997 11 6 3.9461 -1.0030 3.6493 12 8 3.4580 0.0931 3.8260 13 6 4.4160 -1.8174 4.8270 14 1 5.3523 -2.3151 4.5743 15 7 4.6277 -0.9329 5.9807 16 6 3.3586 -2.8666 5.1760 17 6 3.8876 -3.7732 6.2893 18 6 2.8463 -4.8071 6.6326 19 1 1.9019 -4.8168 6.1088 20 6 3.0994 -5.7404 7.6153 21 7 4.2497 -5.7288 8.2528 22 14 1.8089 -7.0224 8.0404 23 1 0.6116 -6.8220 7.1851 24 1 2.3637 -8.3798 7.8061 25 1 1.4254 -6.8841 9.4684 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.7433 1.9327 -0.9273 31 1 1.6128 1.9789 0.8473 32 1 3.1270 1.4436 0.0799 33 1 1.5908 -1.7128 1.3052 34 1 1.7676 -0.1486 2.1360 35 1 3.1344 -2.4224 -0.2793 36 1 4.2637 -1.1604 -0.8674 37 1 6.0799 -2.0014 0.4814 38 1 5.2460 -3.5321 0.0501 39 1 5.6084 -2.9211 2.6599 40 1 4.0362 -3.5915 2.1272 41 1 5.3673 -0.2713 5.7983 42 1 3.7736 -0.4595 6.2349 43 1 2.4500 -2.3684 5.5141 44 1 3.1371 -3.4666 4.2934 45 1 4.7962 -4.2714 5.9512 46 1 4.1093 -3.1731 7.1718 47 1 4.4276 -6.3852 8.9444 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424081973.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:01 Heat of formation + Delta-G solvation = -89.252821 kcal Electronic energy + Delta-G solvation = -23329.484682 eV Core-core repulsion = 20123.780275 eV Total energy + Delta-G solvation = -3205.704408 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.51356 -39.14310 -36.92456 -36.70562 -34.82542 -32.61993 -31.93978 -31.10591 -28.17166 -28.07067 -26.63653 -25.73652 -23.58162 -22.46725 -21.90232 -20.62577 -19.89063 -18.59291 -18.27432 -17.33736 -16.92550 -16.70256 -16.35832 -15.98601 -15.30448 -15.15199 -14.91342 -14.58810 -14.47812 -14.26452 -14.00646 -13.96540 -13.61439 -13.46691 -13.23386 -13.03157 -12.82534 -12.67775 -12.51310 -12.35587 -12.10899 -12.02718 -11.89098 -11.78871 -11.66958 -11.57919 -11.45541 -11.38990 -11.23445 -10.96543 -10.50248 -9.67551 -9.62493 -8.14611 -6.25091 1.40661 1.41815 1.48373 1.54577 1.99022 2.43969 3.18298 3.39235 3.59010 3.63624 3.79258 3.85444 3.97732 4.03207 4.04963 4.19077 4.27878 4.33423 4.41376 4.49377 4.71121 4.73691 4.75852 4.77779 4.85681 4.88191 4.94568 4.98201 4.99215 5.03080 5.09541 5.13042 5.20379 5.26455 5.34857 5.41037 5.43600 5.53825 5.55613 5.81721 5.96433 6.06127 6.29053 6.44574 6.48270 6.92761 7.06768 7.43083 8.96856 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018391 B = 0.003912 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.090499 B = 7155.033025 C = 7402.958611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.146 4.146 4 C -0.120 4.120 5 C 0.128 3.872 6 H 0.067 0.933 7 C -0.119 4.119 8 C -0.122 4.122 9 C 0.084 3.916 10 N -0.611 5.611 11 C 0.499 3.501 12 O -0.581 6.581 13 C 0.089 3.911 14 H 0.104 0.896 15 N -0.818 5.818 16 C -0.076 4.076 17 C 0.042 3.958 18 C -0.543 4.543 19 H 0.053 0.947 20 C 0.003 3.997 21 N -0.929 5.929 22 Si 0.960 3.040 23 H -0.265 1.265 24 H -0.275 1.275 25 H -0.281 1.281 26 H 0.039 0.961 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.035 0.965 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.037 0.963 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.346 0.654 42 H 0.344 0.656 43 H 0.037 0.963 44 H 0.062 0.938 45 H -0.005 1.005 46 H 0.005 0.995 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.163 9.010 -22.186 23.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 C -0.203 4.203 4 C -0.158 4.158 5 C 0.025 3.975 6 H 0.085 0.915 7 C -0.156 4.156 8 C -0.160 4.160 9 C -0.038 4.038 10 N -0.344 5.344 11 C 0.286 3.714 12 O -0.462 6.462 13 C -0.026 4.026 14 H 0.122 0.878 15 N -0.346 5.346 16 C -0.115 4.115 17 C 0.005 3.995 18 C -0.581 4.581 19 H 0.072 0.928 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.785 3.215 23 H -0.189 1.189 24 H -0.201 1.201 25 H -0.207 1.207 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.126 0.874 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.013 0.987 46 H 0.023 0.977 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.132 8.860 -21.470 23.227 hybrid contribution -0.835 0.212 0.382 0.942 sum -0.967 9.072 -21.088 22.977 Atomic orbital electron populations 1.21838 0.95008 1.01863 1.01733 1.21064 0.95906 0.96184 0.97354 1.21868 1.00887 0.95959 1.01618 1.21922 0.94968 1.00306 0.98622 1.21842 0.93917 0.97215 0.84538 0.91535 1.22741 0.98807 0.98072 0.96005 1.22788 0.98352 1.02390 0.92460 1.22662 0.97416 0.85559 0.98181 1.48803 1.56263 1.23687 1.05662 1.22051 0.78058 0.86560 0.84683 1.90615 1.47332 1.22610 1.85636 1.21594 1.00734 0.93832 0.86484 0.87791 1.59002 1.12829 1.27288 1.35522 1.21315 0.95728 0.95028 0.99396 1.18804 0.94605 0.92717 0.93371 1.21717 1.02195 1.14529 1.19652 0.92837 1.25889 0.97544 0.99998 0.96039 1.70112 1.24629 1.36954 1.25215 0.85484 0.79261 0.78785 0.78004 1.18919 1.20072 1.20652 0.94221 0.91117 0.92561 0.88886 0.91087 0.94529 0.92783 0.92406 0.94461 0.89530 0.87888 0.89953 0.87395 0.90167 0.91044 0.84111 0.84219 0.94372 0.91972 0.98694 0.97661 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.19 71.98 0.66 -1.84 16 2 C -0.09 -1.50 2.82 -10.79 -0.03 -1.53 16 3 C -0.15 -2.56 9.07 71.98 0.65 -1.91 16 4 C -0.12 -2.83 4.12 30.60 0.13 -2.71 16 5 C 0.13 2.80 2.73 45.34 0.12 2.93 16 6 H 0.07 1.57 6.39 -2.39 -0.02 1.56 16 7 C -0.12 -1.62 5.40 31.78 0.17 -1.45 16 8 C -0.12 -1.65 7.08 31.98 0.23 -1.43 16 9 C 0.08 1.78 6.45 86.85 0.56 2.34 16 10 N -0.61 -16.39 3.07 -788.07 -2.42 -18.81 16 11 C 0.50 16.86 6.82 87.66 0.60 17.45 16 12 O -0.58 -22.74 15.43 -3.02 -0.05 -22.79 16 13 C 0.09 3.18 2.61 44.17 0.12 3.30 16 14 H 0.10 3.50 6.88 -2.39 -0.02 3.48 16 15 N -0.82 -29.45 8.44 -171.79 -1.45 -30.90 16 16 C -0.08 -3.24 4.78 30.59 0.15 -3.09 16 17 C 0.04 2.24 4.86 29.85 0.15 2.39 16 18 C -0.54 -31.27 9.11 25.60 0.23 -31.04 16 19 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 20 C 0.00 0.18 5.46 84.65 0.46 0.65 16 21 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 22 Si 0.96 44.71 29.54 68.60 2.03 46.73 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 26 H 0.04 0.78 8.14 -2.39 -0.02 0.77 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.09 1.22 7.20 -2.39 -0.02 1.21 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.96 6.35 -2.39 -0.02 0.94 16 33 H 0.06 1.41 8.09 -2.38 -0.02 1.39 16 34 H 0.04 1.17 6.93 -2.39 -0.02 1.15 16 35 H 0.09 1.09 7.80 -2.39 -0.02 1.07 16 36 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 1.71 6.98 -2.39 -0.02 1.69 16 40 H 0.07 1.59 7.95 -2.39 -0.02 1.57 16 41 H 0.35 10.76 9.06 -89.70 -0.81 9.95 16 42 H 0.34 12.72 8.58 -89.69 -0.77 11.95 16 43 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.06 2.48 7.76 -2.39 -0.02 2.47 16 45 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 46 H 0.00 0.29 7.75 -2.39 -0.02 0.27 16 47 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -70.54 366.79 1.95 -68.59 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: -0.64 Total: 29.71 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: 4.19 Total: -15.94 kcal Atomic # 7 Polarization: -102.73 SS G_CDS: -3.58 Total: -106.31 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.05 Total: -22.79 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -70.54 1.95 -68.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424081973.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.662 kcal (2) G-P(sol) polarization free energy of solvation -70.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds