Wall clock time and date at job start Tue Mar 31 2020 05:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47254 * 2 1 4 4 C 1.53000 * 109.47030 * 119.99849 * 2 1 3 5 5 C 1.53007 * 109.46864 * 65.00101 * 4 2 1 6 6 N 1.46499 * 109.46789 * 174.77909 * 5 4 2 7 7 C 1.34777 * 120.00214 * 264.52586 * 6 5 4 8 8 O 1.21282 * 120.00305 * 175.71734 * 7 6 5 9 9 C 1.50701 * 119.99872 * 355.72239 * 7 6 5 10 10 H 1.08997 * 109.47211 * 331.39482 * 9 7 6 11 11 N 1.46904 * 109.47164 * 211.39358 * 9 7 6 12 12 C 1.53001 * 109.47294 * 91.39162 * 9 7 6 13 13 C 1.52998 * 109.47414 * 184.81070 * 12 9 7 14 14 C 1.50697 * 109.47155 * 180.02562 * 13 12 9 15 15 H 1.07996 * 119.99913 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99943 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99815 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00032 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47257 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47253 * 119.99950 * 18 16 14 21 21 H 1.48503 * 109.47363 * 239.99885 * 18 16 14 22 22 C 1.46503 * 120.00157 * 84.53309 * 6 5 4 23 23 C 1.52997 * 117.49998 * 197.28122 * 22 6 5 24 24 C 1.52999 * 117.50170 * 128.61729 * 22 6 5 25 25 H 1.09000 * 109.47195 * 59.99345 * 1 2 3 26 26 H 1.08995 * 109.47419 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47182 * 299.99957 * 1 2 3 28 28 H 1.09002 * 109.47182 * 240.00043 * 2 1 3 29 29 H 1.08998 * 109.47178 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47308 * 299.99696 * 3 2 1 31 31 H 1.08998 * 109.47131 * 60.00427 * 3 2 1 32 32 H 1.09001 * 109.46763 * 184.99570 * 4 2 1 33 33 H 1.08993 * 109.47513 * 305.00026 * 4 2 1 34 34 H 1.08995 * 109.46960 * 294.77945 * 5 4 2 35 35 H 1.08997 * 109.47031 * 54.78005 * 5 4 2 36 36 H 1.00902 * 110.99858 * 176.04182 * 11 9 7 37 37 H 1.00900 * 110.99934 * 300.00176 * 11 9 7 38 38 H 1.08997 * 109.47308 * 304.81500 * 12 9 7 39 39 H 1.09000 * 109.46768 * 64.81122 * 12 9 7 40 40 H 1.09007 * 109.46819 * 300.00196 * 13 12 9 41 41 H 1.08997 * 109.46797 * 59.99852 * 13 12 9 42 42 H 0.97007 * 119.99996 * 180.02562 * 17 16 14 43 43 H 1.09006 * 115.54699 * 342.94931 * 22 6 5 44 44 H 1.08998 * 117.49842 * 359.97438 * 23 22 6 45 45 H 1.09003 * 117.49753 * 145.01912 * 23 22 6 46 46 H 1.08997 * 117.49472 * 214.97992 * 24 22 6 47 47 H 1.08998 * 117.49446 * 359.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1955 1.1879 6 7 2.2283 -2.9122 2.3196 7 6 3.3954 -3.5682 2.1649 8 8 3.9257 -4.0959 3.1195 9 6 4.0415 -3.6460 0.8056 10 1 3.2725 -3.6003 0.0346 11 7 4.7802 -4.9103 0.6862 12 6 5.0078 -2.4725 0.6323 13 6 5.5731 -2.4830 -0.7894 14 6 6.5253 -1.3274 -0.9599 15 1 6.7091 -0.6533 -0.1365 16 6 7.1616 -1.1309 -2.1672 17 7 6.9380 -1.9522 -3.1697 18 14 8.3424 0.3010 -2.3783 19 1 8.4197 1.0700 -1.1103 20 1 9.6902 -0.2160 -2.7271 21 1 7.8558 1.1878 -3.4656 22 6 1.5528 -2.9158 3.6196 23 6 2.3790 -3.3147 4.8440 24 6 1.3194 -4.2709 4.2907 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.1263 -0.6443 1.2951 33 1 1.6054 -0.2618 2.1370 34 1 0.5492 -2.2763 1.2355 35 1 1.9915 -2.6316 0.2547 36 1 5.1690 -5.0158 -0.2389 37 1 5.4995 -4.9767 1.3907 38 1 4.4771 -1.5363 0.8054 39 1 5.8241 -2.5652 1.3486 40 1 6.1038 -3.4193 -0.9624 41 1 4.7567 -2.3903 -1.5056 42 1 7.3861 -1.8142 -4.0190 43 1 0.7900 -2.1490 3.7552 44 1 3.4251 -3.5747 4.6822 45 1 2.1596 -2.8106 5.7852 46 1 0.4033 -4.3953 4.8681 47 1 1.6681 -5.1596 3.7648 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424101288.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:38 Heat of formation + Delta-G solvation = -23.081343 kcal Electronic energy + Delta-G solvation = -23681.951209 eV Core-core repulsion = 20479.116212 eV Total energy + Delta-G solvation = -3202.834997 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.40712 -37.06095 -36.73063 -35.15155 -33.79557 -32.78730 -29.91695 -28.79068 -27.13744 -26.70738 -24.30135 -23.47374 -22.28264 -22.12313 -20.41155 -19.91754 -18.60397 -17.22854 -16.51309 -16.31214 -15.30181 -15.09436 -14.74867 -14.44493 -14.26596 -14.14774 -13.72996 -13.54755 -13.23178 -13.09804 -12.90474 -12.58131 -12.28066 -12.11731 -11.88903 -11.84948 -11.44260 -11.30971 -11.17158 -11.02873 -10.78131 -10.73427 -10.63581 -10.58939 -10.49062 -10.24694 -9.86309 -9.69206 -9.23674 -8.92737 -8.44118 -8.30346 -8.16369 -6.08920 -4.11537 2.83162 2.97950 3.25451 3.33818 3.37627 4.01433 4.38914 4.58659 4.76929 4.89694 4.93608 5.01026 5.12787 5.14582 5.18055 5.23685 5.27720 5.38714 5.48679 5.57660 5.65630 5.68935 5.76365 5.77902 5.80044 5.87786 5.89319 5.96731 6.05110 6.14383 6.20925 6.36654 6.42751 6.44406 6.47842 6.59641 6.89223 6.92078 7.39877 7.52075 7.58880 7.64662 7.88083 7.89517 8.31375 8.46904 8.94460 9.53413 11.02015 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013805 B = 0.005413 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.827973 B = 5171.923382 C = 6516.035879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.136 4.136 5 C 0.107 3.893 6 N -0.587 5.587 7 C 0.531 3.469 8 O -0.533 6.533 9 C 0.072 3.928 10 H 0.095 0.905 11 N -0.832 5.832 12 C -0.140 4.140 13 C 0.027 3.973 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.060 3.940 17 N -0.893 5.893 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.072 3.928 23 C -0.198 4.198 24 C -0.191 4.191 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.354 0.646 37 H 0.346 0.654 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.016 0.984 41 H 0.018 0.982 42 H 0.261 0.739 43 H 0.123 0.877 44 H 0.147 0.853 45 H 0.083 0.917 46 H 0.091 0.909 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.122 1.372 8.817 16.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.175 4.175 5 C -0.016 4.016 6 N -0.318 5.318 7 C 0.321 3.679 8 O -0.410 6.410 9 C -0.043 4.043 10 H 0.113 0.887 11 N -0.365 5.365 12 C -0.179 4.179 13 C -0.011 4.011 14 C -0.559 4.559 15 H 0.073 0.927 16 C -0.142 4.142 17 N -0.532 5.532 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.032 4.032 23 C -0.235 4.235 24 C -0.229 4.229 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.170 0.830 37 H 0.159 0.841 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.035 0.965 41 H 0.036 0.964 42 H 0.070 0.930 43 H 0.140 0.860 44 H 0.164 0.836 45 H 0.101 0.899 46 H 0.110 0.890 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.495 0.696 9.270 17.219 hybrid contribution 1.343 1.534 -0.457 2.089 sum -13.152 2.230 8.813 15.988 Atomic orbital electron populations 1.21909 0.95648 1.01507 1.01491 1.21060 0.95272 0.96656 0.98440 1.21811 1.01903 0.95567 1.01122 1.22193 1.02694 0.94522 0.98071 1.21821 0.98443 0.92152 0.89148 1.47339 1.22361 1.51998 1.10074 1.20938 0.79423 0.76260 0.91317 1.90390 1.63194 1.46611 1.40795 1.21600 0.97573 0.91827 0.93273 0.88702 1.58808 1.34364 1.33115 1.10201 1.22464 0.97415 0.95961 1.02085 1.19081 0.95793 0.97344 0.88844 1.21191 1.25319 1.11880 0.97463 0.92736 1.24987 0.96809 0.96370 0.96010 1.69958 1.43210 1.37111 1.02910 0.86571 0.80973 0.82567 0.78134 1.19757 1.20964 1.20951 1.21563 0.99991 0.98681 0.83003 1.24097 1.02099 1.02155 0.95181 1.23232 1.00616 0.94739 1.04342 0.92807 0.92684 0.93014 0.90332 0.91944 0.92804 0.93229 0.90357 0.91983 0.90492 0.89210 0.83034 0.84104 0.92050 0.92696 0.96535 0.96404 0.92973 0.85982 0.83587 0.89905 0.89012 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.95 37.16 0.33 -1.03 16 2 C -0.10 -1.08 2.92 -90.62 -0.26 -1.34 16 3 C -0.15 -1.70 9.19 37.16 0.34 -1.36 16 4 C -0.14 -1.62 4.97 -26.73 -0.13 -1.75 16 5 C 0.11 1.25 5.04 -4.04 -0.02 1.23 16 6 N -0.59 -8.12 2.84 -166.10 -0.47 -8.59 16 7 C 0.53 8.93 6.59 -10.98 -0.07 8.86 16 8 O -0.53 -10.07 12.26 5.56 0.07 -10.00 16 9 C 0.07 1.24 2.59 -68.86 -0.18 1.06 16 10 H 0.10 1.55 5.85 -51.93 -0.30 1.25 16 11 N -0.83 -14.38 9.04 -5.65 -0.05 -14.43 16 12 C -0.14 -2.75 4.78 -26.73 -0.13 -2.88 16 13 C 0.03 0.63 4.74 -27.89 -0.13 0.50 16 14 C -0.52 -14.07 9.11 -34.44 -0.31 -14.38 16 15 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 18 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.07 0.90 6.63 -67.93 -0.45 0.45 16 23 C -0.20 -2.64 9.64 -26.69 -0.26 -2.90 16 24 C -0.19 -2.37 9.90 -26.69 -0.26 -2.63 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.46 6.68 -51.93 -0.35 0.12 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 1.13 5.50 -51.93 -0.29 0.84 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.74 6.79 -51.93 -0.35 0.39 16 35 H 0.09 1.11 5.52 -51.93 -0.29 0.83 16 36 H 0.35 6.13 7.54 -39.29 -0.30 5.84 16 37 H 0.35 6.07 8.55 -39.29 -0.34 5.73 16 38 H 0.06 1.17 5.45 -51.93 -0.28 0.89 16 39 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.02 0.41 6.86 -51.92 -0.36 0.06 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.15 2.42 4.96 -53.41 -0.26 2.15 16 45 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.09 1.38 7.83 -51.93 -0.41 0.98 16 LS Contribution 364.08 15.07 5.49 5.49 Total: -1.00 -29.52 364.08 -9.02 -38.55 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -8.13 Total: 12.49 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -1.64 Total: -14.62 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 0.21 Total: -48.01 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.07 Total: -10.00 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.52 -9.02 -38.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424101288.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.465 kcal (2) G-P(sol) polarization free energy of solvation -29.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds