Wall clock time and date at job start Tue Mar 31 2020 05:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47043 * 2 1 4 4 C 1.52998 * 109.47150 * 240.00286 * 2 1 3 5 5 C 1.52993 * 109.47257 * 120.00115 * 2 1 3 6 6 H 1.08999 * 109.87536 * 307.06399 * 5 2 1 7 7 C 1.54322 * 110.01284 * 185.97144 * 5 2 1 8 8 C 1.55158 * 102.94301 * 218.31627 * 7 5 2 9 9 C 1.54906 * 101.58106 * 35.49978 * 8 7 5 10 10 N 1.47019 * 109.88304 * 68.08284 * 5 2 1 11 11 C 1.34774 * 125.64860 * 298.54467 * 10 5 2 12 12 O 1.21279 * 119.99972 * 1.68706 * 11 10 5 13 13 C 1.50707 * 119.99984 * 181.68238 * 11 10 5 14 14 H 1.08999 * 109.46820 * 320.00381 * 13 11 10 15 15 N 1.46897 * 109.47031 * 200.00248 * 13 11 10 16 16 C 1.52999 * 109.46846 * 80.00442 * 13 11 10 17 17 C 1.52998 * 109.46878 * 185.00078 * 16 13 11 18 18 C 1.50705 * 109.47028 * 180.02562 * 17 16 13 19 19 H 1.07994 * 120.00059 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99718 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00370 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99897 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47408 * 89.99399 * 22 20 18 24 24 H 1.48494 * 109.47091 * 209.99858 * 22 20 18 25 25 H 1.48509 * 109.47054 * 329.99821 * 22 20 18 26 26 H 1.08995 * 109.47042 * 275.29787 * 1 2 3 27 27 H 1.09002 * 109.47456 * 35.30429 * 1 2 3 28 28 H 1.09002 * 109.46918 * 155.30117 * 1 2 3 29 29 H 1.08998 * 109.47263 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47141 * 300.00288 * 3 2 1 31 31 H 1.09002 * 109.46806 * 59.99874 * 3 2 1 32 32 H 1.08997 * 109.47419 * 299.99435 * 4 2 1 33 33 H 1.09005 * 109.47465 * 59.99807 * 4 2 1 34 34 H 1.08998 * 109.47108 * 179.97438 * 4 2 1 35 35 H 1.09006 * 110.71884 * 336.67841 * 7 5 2 36 36 H 1.08997 * 110.72478 * 99.94994 * 7 5 2 37 37 H 1.08993 * 111.00444 * 277.42698 * 8 7 5 38 38 H 1.09002 * 111.03494 * 153.58699 * 8 7 5 39 39 H 1.09005 * 110.36911 * 204.15007 * 9 8 7 40 40 H 1.09007 * 110.36873 * 81.83124 * 9 8 7 41 41 H 1.00898 * 111.00491 * 300.00833 * 15 13 11 42 42 H 1.00907 * 111.00004 * 63.95354 * 15 13 11 43 43 H 1.08994 * 109.47192 * 304.99976 * 16 13 11 44 44 H 1.08999 * 109.46848 * 65.00103 * 16 13 11 45 45 H 1.09008 * 109.47030 * 299.99842 * 17 16 13 46 46 H 1.08992 * 109.47176 * 59.99958 * 17 16 13 47 47 H 0.96993 * 120.00345 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 1.5811 -0.2905 2.1391 7 6 3.5757 -0.5992 1.3395 8 6 4.0044 -1.9924 1.8711 9 6 2.9793 -2.9205 1.1730 10 7 1.7202 -2.1537 1.1651 11 6 0.4811 -2.6789 1.0921 12 8 -0.4864 -1.9483 1.0617 13 6 0.2978 -4.1742 1.0484 14 1 1.0665 -4.6160 0.4143 15 7 -1.0287 -4.4891 0.5017 16 6 0.4146 -4.7438 2.4636 17 6 0.3532 -6.2715 2.4050 18 6 0.4675 -6.8326 3.7990 19 1 0.5738 -6.1664 4.6423 20 6 0.4375 -8.1967 3.9976 21 7 0.3087 -9.0081 2.9707 22 14 0.5785 -8.8922 5.7255 23 1 -0.7769 -9.0263 6.3174 24 1 1.2289 -10.2260 5.6706 25 1 1.3957 -7.9771 6.5624 26 1 -0.3633 0.0949 1.0232 27 1 -0.3634 0.8387 -0.5939 28 1 -0.3633 -0.9337 -0.4294 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6768 -1.7488 -1.2493 33 1 1.6767 -0.2073 -2.1393 34 1 3.1300 -0.7208 -1.2495 35 1 4.0063 -0.4126 0.3556 36 1 3.8598 0.1853 2.0408 37 1 3.9040 -2.0447 2.9551 38 1 5.0221 -2.2325 1.5630 39 1 2.8574 -3.8444 1.7385 40 1 3.2974 -3.1381 0.1533 41 1 -1.7591 -4.0901 1.0721 42 1 -1.1081 -4.1798 -0.4555 43 1 1.3632 -4.4349 2.9025 44 1 -0.4073 -4.3703 3.0745 45 1 -0.5956 -6.5804 1.9660 46 1 1.1749 -6.6449 1.7941 47 1 0.2879 -9.9677 3.1104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424115704.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:05 Heat of formation + Delta-G solvation = -44.384955 kcal Electronic energy + Delta-G solvation = -24014.150277 eV Core-core repulsion = 20810.391486 eV Total energy + Delta-G solvation = -3203.758791 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.79224 -38.08320 -35.82411 -34.93379 -32.77139 -31.63803 -30.07172 -28.46402 -27.39610 -27.30660 -26.21369 -24.26855 -22.67250 -21.50094 -20.44402 -19.48542 -18.02911 -17.28265 -16.60317 -16.26004 -15.46253 -15.29410 -14.64985 -14.41070 -14.37025 -14.04368 -13.73523 -13.47241 -13.25528 -12.79868 -12.60289 -12.49513 -12.25780 -12.13447 -11.92761 -11.82115 -11.65830 -11.43637 -11.24251 -11.14750 -10.87992 -10.77437 -10.60045 -10.53711 -10.42927 -10.35088 -9.79421 -9.62788 -9.31390 -8.98527 -8.42473 -8.30395 -8.13665 -5.93028 -3.95157 2.85429 3.13341 3.35227 3.41495 3.44257 4.36587 4.44184 4.50774 4.62690 4.85450 4.90531 4.91986 4.99282 5.13242 5.25682 5.30251 5.42497 5.42820 5.47932 5.57308 5.58983 5.68443 5.68704 5.74699 5.77995 5.85852 5.88247 5.91682 6.01334 6.03475 6.09465 6.22129 6.36147 6.43299 6.54016 6.70007 6.71671 7.11275 7.45368 7.70082 7.77205 7.83100 7.97357 8.14415 8.41186 8.49634 9.12910 9.67988 11.17857 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026033 B = 0.004106 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.292925 B = 6817.385228 C = 7360.380247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.077 4.077 3 C -0.139 4.139 4 C -0.135 4.135 5 C 0.145 3.855 6 H 0.070 0.930 7 C -0.130 4.130 8 C -0.133 4.133 9 C 0.093 3.907 10 N -0.607 5.607 11 C 0.490 3.510 12 O -0.537 6.537 13 C 0.082 3.918 14 H 0.093 0.907 15 N -0.807 5.807 16 C -0.094 4.094 17 C 0.032 3.968 18 C -0.522 4.522 19 H 0.051 0.949 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.888 3.112 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 H 0.062 0.938 27 H 0.028 0.972 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.347 0.653 42 H 0.332 0.668 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.034 0.966 46 H 0.012 0.988 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.635 18.701 -7.406 21.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.078 4.078 3 C -0.196 4.196 4 C -0.192 4.192 5 C 0.041 3.959 6 H 0.088 0.912 7 C -0.168 4.168 8 C -0.171 4.171 9 C -0.030 4.030 10 N -0.342 5.342 11 C 0.278 3.722 12 O -0.415 6.415 13 C -0.034 4.034 14 H 0.111 0.889 15 N -0.335 5.335 16 C -0.132 4.132 17 C -0.005 4.005 18 C -0.560 4.560 19 H 0.070 0.930 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.716 3.284 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.200 1.200 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.161 0.839 42 H 0.144 0.856 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.030 0.970 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.195 18.065 -7.338 20.784 hybrid contribution 0.079 0.618 0.851 1.055 sum 7.274 18.683 -6.487 21.073 Atomic orbital electron populations 1.22272 0.92708 1.00988 1.02390 1.20922 0.97186 0.94856 0.94861 1.21892 1.00739 0.95294 1.01709 1.21851 1.00366 1.00383 0.96608 1.21680 0.94741 0.82155 0.97345 0.91190 1.22781 0.94169 0.97781 1.02054 1.22778 0.98885 0.94436 1.01029 1.22446 0.83513 0.96196 1.00816 1.48609 1.05845 1.06504 1.73219 1.22334 0.81510 0.93041 0.75288 1.90715 1.39519 1.61365 1.49943 1.21782 0.93536 0.87164 1.00874 0.88942 1.59016 1.02790 1.65420 1.06259 1.21640 1.00316 1.00996 0.90256 1.19007 0.98297 0.86745 0.96445 1.21278 1.49917 0.91545 0.93277 0.93045 1.24983 0.95492 0.97261 0.96536 1.69972 1.50526 1.03077 1.29608 0.86664 0.78164 0.78376 0.85179 1.20731 1.21289 1.20016 0.91880 0.95323 0.90794 0.92582 0.92692 0.92740 0.92731 0.93104 0.92886 0.90227 0.90426 0.90433 0.89893 0.89252 0.91493 0.83898 0.85612 0.92912 0.92977 0.94725 0.96969 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 6.94 37.16 0.26 -1.43 16 2 C -0.08 -0.84 0.57 -154.51 -0.09 -0.93 16 3 C -0.14 -1.22 8.01 37.16 0.30 -0.92 16 4 C -0.13 -1.40 7.92 37.16 0.29 -1.11 16 5 C 0.14 1.65 2.35 -66.96 -0.16 1.49 16 6 H 0.07 0.90 7.97 -51.93 -0.41 0.49 16 7 C -0.13 -1.11 5.15 -24.90 -0.13 -1.24 16 8 C -0.13 -1.20 7.09 -24.58 -0.17 -1.37 16 9 C 0.09 1.05 6.40 -2.53 -0.02 1.03 16 10 N -0.61 -7.95 2.07 -163.02 -0.34 -8.29 16 11 C 0.49 7.71 6.34 -10.98 -0.07 7.65 16 12 O -0.54 -9.32 11.01 5.56 0.06 -9.26 16 13 C 0.08 1.40 2.42 -68.86 -0.17 1.23 16 14 H 0.09 1.53 7.63 -51.93 -0.40 1.14 16 15 N -0.81 -13.75 8.44 -5.65 -0.05 -13.80 16 16 C -0.09 -1.91 4.64 -26.73 -0.12 -2.04 16 17 C 0.03 0.82 4.86 -27.88 -0.14 0.69 16 18 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 19 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 22 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H 0.06 0.95 6.67 -51.93 -0.35 0.61 16 27 H 0.03 0.34 7.90 -51.93 -0.41 -0.07 16 28 H 0.07 1.13 5.58 -51.94 -0.29 0.84 16 29 H 0.06 0.42 6.69 -51.93 -0.35 0.07 16 30 H 0.05 0.47 8.12 -51.93 -0.42 0.04 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.66 7.16 -51.93 -0.37 0.28 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.48 6.43 -51.93 -0.33 0.15 16 35 H 0.08 0.62 5.53 -51.93 -0.29 0.33 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 1.14 6.12 -51.93 -0.32 0.83 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.35 5.99 8.58 -39.29 -0.34 5.65 16 42 H 0.33 4.94 9.06 -39.29 -0.36 4.58 16 43 H 0.05 1.03 6.72 -51.93 -0.35 0.68 16 44 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.03 0.96 7.75 -51.92 -0.40 0.56 16 46 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 352.02 15.07 5.30 5.30 Total: -1.00 -30.98 352.02 -8.23 -39.20 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -8.30 Total: 6.74 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -0.62 Total: -10.44 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 0.35 Total: -48.28 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.06 Total: -9.26 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.98 -8.23 -39.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424115704.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.181 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds