Wall clock time and date at job start Tue Mar 31 2020 05:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47043 * 2 1 4 4 C 1.52998 * 109.47150 * 240.00286 * 2 1 3 5 5 C 1.52993 * 109.47257 * 120.00115 * 2 1 3 6 6 H 1.08999 * 109.87536 * 307.06399 * 5 2 1 7 7 C 1.54322 * 110.01284 * 185.97144 * 5 2 1 8 8 C 1.55158 * 102.94301 * 218.31627 * 7 5 2 9 9 C 1.54906 * 101.58106 * 35.49978 * 8 7 5 10 10 N 1.47019 * 109.88304 * 68.08284 * 5 2 1 11 11 C 1.34774 * 125.64860 * 298.54467 * 10 5 2 12 12 O 1.21279 * 119.99972 * 1.68706 * 11 10 5 13 13 C 1.50707 * 119.99984 * 181.68238 * 11 10 5 14 14 H 1.08999 * 109.46820 * 320.00381 * 13 11 10 15 15 N 1.46897 * 109.47031 * 200.00248 * 13 11 10 16 16 C 1.52999 * 109.46846 * 80.00442 * 13 11 10 17 17 C 1.52998 * 109.46878 * 185.00078 * 16 13 11 18 18 C 1.50705 * 109.47028 * 180.02562 * 17 16 13 19 19 H 1.07994 * 120.00059 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99718 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00370 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99897 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47408 * 89.99399 * 22 20 18 24 24 H 1.48494 * 109.47091 * 209.99858 * 22 20 18 25 25 H 1.48509 * 109.47054 * 329.99821 * 22 20 18 26 26 H 1.08995 * 109.47042 * 275.29787 * 1 2 3 27 27 H 1.09002 * 109.47456 * 35.30429 * 1 2 3 28 28 H 1.09002 * 109.46918 * 155.30117 * 1 2 3 29 29 H 1.08998 * 109.47263 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47141 * 300.00288 * 3 2 1 31 31 H 1.09002 * 109.46806 * 59.99874 * 3 2 1 32 32 H 1.08997 * 109.47419 * 299.99435 * 4 2 1 33 33 H 1.09005 * 109.47465 * 59.99807 * 4 2 1 34 34 H 1.08998 * 109.47108 * 179.97438 * 4 2 1 35 35 H 1.09006 * 110.71884 * 336.67841 * 7 5 2 36 36 H 1.08997 * 110.72478 * 99.94994 * 7 5 2 37 37 H 1.08993 * 111.00444 * 277.42698 * 8 7 5 38 38 H 1.09002 * 111.03494 * 153.58699 * 8 7 5 39 39 H 1.09005 * 110.36911 * 204.15007 * 9 8 7 40 40 H 1.09007 * 110.36873 * 81.83124 * 9 8 7 41 41 H 1.00898 * 111.00491 * 300.00833 * 15 13 11 42 42 H 1.00907 * 111.00004 * 63.95354 * 15 13 11 43 43 H 1.08994 * 109.47192 * 304.99976 * 16 13 11 44 44 H 1.08999 * 109.46848 * 65.00103 * 16 13 11 45 45 H 1.09008 * 109.47030 * 299.99842 * 17 16 13 46 46 H 1.08992 * 109.47176 * 59.99958 * 17 16 13 47 47 H 0.96993 * 120.00345 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 1 1.5811 -0.2905 2.1391 7 6 3.5757 -0.5992 1.3395 8 6 4.0044 -1.9924 1.8711 9 6 2.9793 -2.9205 1.1730 10 7 1.7202 -2.1537 1.1651 11 6 0.4811 -2.6789 1.0921 12 8 -0.4864 -1.9483 1.0617 13 6 0.2978 -4.1742 1.0484 14 1 1.0665 -4.6160 0.4143 15 7 -1.0287 -4.4891 0.5017 16 6 0.4146 -4.7438 2.4636 17 6 0.3532 -6.2715 2.4050 18 6 0.4675 -6.8326 3.7990 19 1 0.5738 -6.1664 4.6423 20 6 0.4375 -8.1967 3.9976 21 7 0.3087 -9.0081 2.9707 22 14 0.5785 -8.8922 5.7255 23 1 -0.7769 -9.0263 6.3174 24 1 1.2289 -10.2260 5.6706 25 1 1.3957 -7.9771 6.5624 26 1 -0.3633 0.0949 1.0232 27 1 -0.3634 0.8387 -0.5939 28 1 -0.3633 -0.9337 -0.4294 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6768 -1.7488 -1.2493 33 1 1.6767 -0.2073 -2.1393 34 1 3.1300 -0.7208 -1.2495 35 1 4.0063 -0.4126 0.3556 36 1 3.8598 0.1853 2.0408 37 1 3.9040 -2.0447 2.9551 38 1 5.0221 -2.2325 1.5630 39 1 2.8574 -3.8444 1.7385 40 1 3.2974 -3.1381 0.1533 41 1 -1.7591 -4.0901 1.0721 42 1 -1.1081 -4.1798 -0.4555 43 1 1.3632 -4.4349 2.9025 44 1 -0.4073 -4.3703 3.0745 45 1 -0.5956 -6.5804 1.9660 46 1 1.1749 -6.6449 1.7941 47 1 0.2879 -9.9677 3.1104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424115704.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:05 Heat of formation + Delta-G solvation = -63.591265 kcal Electronic energy + Delta-G solvation = -24014.983125 eV Core-core repulsion = 20810.391486 eV Total energy + Delta-G solvation = -3204.591639 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.85784 -39.22491 -37.02047 -36.26318 -34.78704 -32.60382 -31.92824 -29.37210 -28.49194 -28.17422 -27.69781 -25.77804 -24.02733 -22.30860 -22.14212 -20.67062 -19.07348 -18.55138 -18.24297 -17.57998 -16.93411 -16.60661 -16.34269 -15.67793 -15.33702 -15.23960 -14.78810 -14.58952 -14.33988 -14.21500 -13.80912 -13.65113 -13.57339 -13.37992 -13.30007 -12.90144 -12.80686 -12.69215 -12.50396 -12.42532 -12.27147 -11.98081 -11.97678 -11.71985 -11.66662 -11.41602 -11.30386 -11.24984 -11.11235 -10.74727 -10.49178 -9.57609 -9.45983 -8.14196 -6.24846 1.41306 1.42720 1.53064 1.58807 2.05775 2.44237 3.18654 3.44863 3.60547 3.63122 3.80637 3.88146 4.03907 4.08989 4.10661 4.22718 4.31947 4.45571 4.49298 4.58943 4.71094 4.77394 4.78620 4.85862 4.89145 4.94822 4.96699 5.01327 5.03900 5.11236 5.14784 5.21840 5.23680 5.29674 5.36561 5.48364 5.55830 5.58963 5.62649 5.82463 5.97190 6.10407 6.29561 6.49172 6.55411 6.93174 7.19199 7.43345 8.97056 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026033 B = 0.004106 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.292925 B = 6817.385228 C = 7360.380247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.075 4.075 3 C -0.134 4.134 4 C -0.130 4.130 5 C 0.138 3.862 6 H 0.052 0.948 7 C -0.119 4.119 8 C -0.126 4.126 9 C 0.084 3.916 10 N -0.604 5.604 11 C 0.490 3.510 12 O -0.557 6.557 13 C 0.091 3.909 14 H 0.097 0.903 15 N -0.818 5.818 16 C -0.078 4.078 17 C 0.043 3.957 18 C -0.544 4.544 19 H 0.054 0.946 20 C 0.003 3.997 21 N -0.929 5.929 22 Si 0.959 3.041 23 H -0.276 1.276 24 H -0.280 1.280 25 H -0.263 1.263 26 H 0.038 0.962 27 H 0.036 0.964 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.033 0.967 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.344 0.656 42 H 0.345 0.655 43 H 0.062 0.938 44 H 0.038 0.962 45 H 0.004 0.996 46 H -0.007 1.007 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.827 20.180 -7.107 23.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.076 4.076 3 C -0.191 4.191 4 C -0.188 4.188 5 C 0.035 3.965 6 H 0.070 0.930 7 C -0.156 4.156 8 C -0.164 4.164 9 C -0.038 4.038 10 N -0.336 5.336 11 C 0.278 3.722 12 O -0.437 6.437 13 C -0.025 4.025 14 H 0.115 0.885 15 N -0.347 5.347 16 C -0.116 4.116 17 C 0.005 3.995 18 C -0.582 4.582 19 H 0.072 0.928 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.784 3.216 23 H -0.202 1.202 24 H -0.206 1.206 25 H -0.188 1.188 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.089 0.911 38 H 0.127 0.873 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.081 0.919 44 H 0.057 0.943 45 H 0.022 0.978 46 H 0.011 0.989 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.419 19.568 -7.044 22.831 hybrid contribution -0.626 0.154 0.722 0.968 sum 8.793 19.722 -6.322 22.500 Atomic orbital electron populations 1.22136 0.94910 0.99978 1.00621 1.20911 0.95282 0.96528 0.94898 1.21854 1.02019 0.93347 1.01910 1.21809 1.01572 0.99012 0.96365 1.21871 0.97070 0.80690 0.96910 0.93011 1.22790 0.91309 0.97993 1.03536 1.22783 0.99339 0.93912 1.00388 1.22648 0.83355 0.95925 1.01850 1.48606 1.05526 1.07884 1.71629 1.21850 0.82387 0.92106 0.75874 1.90727 1.40471 1.61418 1.51068 1.21520 0.93724 0.88517 0.98734 0.88497 1.58988 1.02774 1.65846 1.07077 1.21341 1.00245 0.97513 0.92495 1.18796 0.95721 0.90078 0.94868 1.21703 1.49917 0.92175 0.94410 0.92787 1.25890 0.94924 0.97673 1.00965 1.70103 1.51311 1.03467 1.32056 0.85539 0.78398 0.77794 0.79848 1.20228 1.20591 1.18757 0.94330 0.94527 0.93124 0.90457 0.92217 0.92907 0.94796 0.92649 0.90813 0.88475 0.88597 0.91145 0.87301 0.91183 0.89933 0.84196 0.84249 0.91941 0.94283 0.97753 0.98886 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.18 6.94 71.98 0.50 -2.68 16 2 C -0.08 -1.51 0.57 -52.18 -0.03 -1.54 16 3 C -0.13 -1.97 8.01 71.98 0.58 -1.39 16 4 C -0.13 -2.43 7.92 71.98 0.57 -1.86 16 5 C 0.14 2.93 2.35 45.34 0.11 3.04 16 6 H 0.05 1.30 7.97 -2.39 -0.02 1.28 16 7 C -0.12 -1.61 5.15 31.78 0.16 -1.45 16 8 C -0.13 -1.90 7.09 31.99 0.23 -1.67 16 9 C 0.08 1.78 6.40 86.85 0.56 2.34 16 10 N -0.60 -15.43 2.07 -788.06 -1.63 -17.06 16 11 C 0.49 15.70 6.34 87.66 0.56 16.26 16 12 O -0.56 -19.94 11.01 -3.03 -0.03 -19.97 16 13 C 0.09 3.17 2.42 44.17 0.11 3.28 16 14 H 0.10 3.28 7.63 -2.39 -0.02 3.27 16 15 N -0.82 -28.95 8.44 -171.80 -1.45 -30.40 16 16 C -0.08 -3.26 4.64 30.59 0.14 -3.12 16 17 C 0.04 2.26 4.86 29.85 0.15 2.40 16 18 C -0.54 -31.29 9.11 25.60 0.23 -31.05 16 19 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 20 C 0.00 0.20 5.46 84.65 0.46 0.66 16 21 N -0.93 -56.99 13.29 21.45 0.28 -56.71 16 22 Si 0.96 44.66 29.54 68.60 2.03 46.68 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 26 H 0.04 1.19 6.67 -2.39 -0.02 1.18 16 27 H 0.04 0.87 7.90 -2.39 -0.02 0.85 16 28 H 0.05 1.58 5.58 -2.59 -0.01 1.57 16 29 H 0.08 0.83 6.69 -2.39 -0.02 0.81 16 30 H 0.06 0.84 8.12 -2.39 -0.02 0.82 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 32 H 0.03 0.77 7.16 -2.39 -0.02 0.75 16 33 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.07 1.06 6.43 -2.39 -0.02 1.05 16 35 H 0.10 1.03 5.53 -2.38 -0.01 1.01 16 36 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.76 6.12 -2.38 -0.01 1.75 16 40 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 41 H 0.34 12.44 8.58 -89.70 -0.77 11.67 16 42 H 0.34 10.58 9.06 -89.69 -0.81 9.76 16 43 H 0.06 2.47 6.72 -2.39 -0.02 2.45 16 44 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.00 0.24 7.75 -2.38 -0.02 0.22 16 46 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 47 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -68.39 352.02 2.89 -65.51 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: -0.63 Total: 28.73 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: 4.31 Total: -16.79 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -2.79 Total: -104.16 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.03 Total: -19.97 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -68.39 2.89 -65.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424115704.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.916 kcal (2) G-P(sol) polarization free energy of solvation -68.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds