Wall clock time and date at job start Tue Mar 31 2020 05:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46988 * 2 1 4 4 C 1.52991 * 109.47426 * 240.00071 * 2 1 3 5 5 C 1.53004 * 109.46904 * 119.99784 * 2 1 3 6 6 H 1.09004 * 109.99428 * 173.16318 * 5 2 1 7 7 C 1.54325 * 109.88091 * 294.25984 * 5 2 1 8 8 C 1.55155 * 102.93795 * 141.61255 * 7 5 2 9 9 C 1.55133 * 101.48713 * 324.33296 * 8 7 5 10 10 N 1.47014 * 109.88164 * 52.07172 * 5 2 1 11 11 C 1.34779 * 125.65316 * 61.60040 * 10 5 2 12 12 O 1.21283 * 119.99639 * 358.44625 * 11 10 5 13 13 C 1.50697 * 120.00153 * 178.17185 * 11 10 5 14 14 H 1.09000 * 109.47281 * 40.28357 * 13 11 10 15 15 N 1.46912 * 109.46814 * 160.27671 * 13 11 10 16 16 C 1.52998 * 109.47157 * 280.27579 * 13 11 10 17 17 C 1.53007 * 109.46835 * 175.00200 * 16 13 11 18 18 C 1.50698 * 109.46632 * 180.02562 * 17 16 13 19 19 H 1.07993 * 120.00416 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99669 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00028 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00067 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47320 * 89.99420 * 22 20 18 24 24 H 1.48499 * 109.47376 * 209.99637 * 22 20 18 25 25 H 1.48504 * 109.47052 * 329.99851 * 22 20 18 26 26 H 1.08991 * 109.47325 * 300.00043 * 1 2 3 27 27 H 1.09003 * 109.47112 * 59.99897 * 1 2 3 28 28 H 1.08993 * 109.46830 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47130 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47278 * 300.00001 * 3 2 1 31 31 H 1.09005 * 109.47091 * 59.99788 * 3 2 1 32 32 H 1.09003 * 109.47134 * 325.95644 * 4 2 1 33 33 H 1.09004 * 109.47181 * 85.95702 * 4 2 1 34 34 H 1.08998 * 109.47642 * 205.95259 * 4 2 1 35 35 H 1.08996 * 110.71912 * 259.96907 * 7 5 2 36 36 H 1.08991 * 110.72192 * 23.25179 * 7 5 2 37 37 H 1.09001 * 111.00822 * 82.57205 * 8 7 5 38 38 H 1.09002 * 111.00659 * 206.38559 * 8 7 5 39 39 H 1.09001 * 110.49207 * 278.45466 * 9 8 7 40 40 H 1.08994 * 110.34520 * 156.06737 * 9 8 7 41 41 H 1.00899 * 110.99791 * 296.04598 * 15 13 11 42 42 H 1.00901 * 110.99513 * 60.00249 * 15 13 11 43 43 H 1.09001 * 109.47327 * 294.99745 * 16 13 11 44 44 H 1.08992 * 109.47010 * 55.00423 * 16 13 11 45 45 H 1.09001 * 109.46792 * 299.99873 * 17 16 13 46 46 H 1.08992 * 109.47139 * 60.00302 * 17 16 13 47 47 H 0.96996 * 119.99674 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 3.1231 -0.8330 1.1991 7 6 1.6527 0.0779 2.5115 8 6 1.2860 -1.0351 3.5284 9 6 0.6217 -2.0903 2.6054 10 7 1.4054 -2.0429 1.3576 11 6 1.5168 -3.0437 0.4617 12 8 2.1641 -2.8816 -0.5510 13 6 0.8423 -4.3660 0.7213 14 1 -0.1434 -4.1925 1.1529 15 7 0.7007 -5.1000 -0.5434 16 6 1.6885 -5.1876 1.6959 17 6 0.9451 -6.4754 2.0563 18 6 1.7784 -7.2843 3.0167 19 1 2.7419 -6.9169 3.3375 20 6 1.3110 -8.4940 3.4850 21 7 0.1378 -8.9416 3.0940 22 14 2.3435 -9.4964 4.6761 23 1 2.0075 -9.1091 6.0697 24 1 2.0604 -10.9412 4.4819 25 1 3.7835 -9.2358 4.4234 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.3584 -1.5326 -1.5040 33 1 2.0929 -0.0167 -2.0793 34 1 3.0324 -1.1279 -1.0543 35 1 2.4979 0.6651 2.8706 36 1 0.7931 0.7181 2.3139 37 1 2.1792 -1.4368 4.0070 38 1 0.5788 -0.6675 4.2719 39 1 -0.4178 -1.8265 2.4107 40 1 0.6846 -3.0808 3.0556 41 1 0.0928 -4.6080 -1.1809 42 1 1.6015 -5.2733 -0.9636 43 1 2.6414 -5.4368 1.2289 44 1 1.8681 -4.6064 2.6003 45 1 -0.0078 -6.2262 2.5233 46 1 0.7656 -7.0566 1.1519 47 1 -0.1911 -9.7924 3.4237 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424115705.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:09 Heat of formation + Delta-G solvation = -44.894686 kcal Electronic energy + Delta-G solvation = -24014.459178 eV Core-core repulsion = 20810.678283 eV Total energy + Delta-G solvation = -3203.780895 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.78843 -38.08310 -35.81331 -34.93172 -32.77072 -31.63500 -30.07064 -28.45514 -27.39610 -27.30809 -26.21404 -24.26932 -22.67341 -21.49665 -20.44439 -19.48514 -18.02886 -17.28048 -16.60170 -16.25717 -15.46455 -15.28887 -14.64708 -14.41090 -14.36410 -14.03846 -13.72963 -13.47067 -13.25611 -12.79767 -12.60513 -12.49949 -12.25922 -12.13330 -11.92595 -11.81957 -11.65598 -11.43795 -11.23802 -11.14829 -10.87749 -10.77855 -10.60233 -10.53228 -10.43213 -10.35646 -9.79512 -9.63083 -9.31278 -8.98164 -8.43004 -8.30568 -8.13743 -5.93060 -3.95136 2.85677 3.13474 3.34720 3.41399 3.44897 4.36678 4.44036 4.50784 4.62738 4.85297 4.90857 4.91676 4.99294 5.13243 5.25489 5.30314 5.42484 5.42677 5.47895 5.57292 5.58921 5.68189 5.68742 5.74629 5.77896 5.85839 5.88176 5.91457 6.01248 6.03296 6.09202 6.22487 6.35810 6.43478 6.54131 6.69954 6.71217 7.11253 7.45369 7.70166 7.77153 7.83221 7.97478 8.14447 8.41303 8.49670 9.12934 9.67983 11.17828 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026016 B = 0.004108 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.017281 B = 6813.636066 C = 7358.197513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.078 4.078 3 C -0.138 4.138 4 C -0.126 4.126 5 C 0.145 3.855 6 H 0.070 0.930 7 C -0.130 4.130 8 C -0.133 4.133 9 C 0.093 3.907 10 N -0.608 5.608 11 C 0.490 3.510 12 O -0.538 6.538 13 C 0.082 3.918 14 H 0.093 0.907 15 N -0.807 5.807 16 C -0.094 4.094 17 C 0.032 3.968 18 C -0.522 4.522 19 H 0.051 0.949 20 C 0.058 3.942 21 N -0.892 5.892 22 Si 0.888 3.112 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.275 1.275 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.028 0.972 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.332 0.668 42 H 0.347 0.653 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.012 0.988 46 H 0.034 0.966 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.172 21.319 -2.906 21.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.078 4.078 3 C -0.196 4.196 4 C -0.183 4.183 5 C 0.041 3.959 6 H 0.088 0.912 7 C -0.168 4.168 8 C -0.171 4.171 9 C -0.030 4.030 10 N -0.342 5.342 11 C 0.279 3.721 12 O -0.416 6.416 13 C -0.034 4.034 14 H 0.111 0.889 15 N -0.335 5.335 16 C -0.132 4.132 17 C -0.005 4.005 18 C -0.560 4.560 19 H 0.070 0.930 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.716 3.284 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.200 1.200 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.144 0.856 42 H 0.161 0.839 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.030 0.970 46 H 0.053 0.947 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.085 20.557 -3.054 20.782 hybrid contribution 0.937 0.319 0.330 1.043 sum 1.021 20.876 -2.724 21.077 Atomic orbital electron populations 1.21856 0.94661 1.01725 1.00980 1.20927 0.95878 0.95194 0.95849 1.21893 1.00986 0.95161 1.01586 1.22249 1.03100 0.98343 0.94579 1.21688 0.97121 0.82804 0.94299 0.91153 1.22787 1.02155 0.97594 0.94288 1.22815 1.01477 0.95595 0.97224 1.22489 0.94968 1.01209 0.84311 1.48610 1.49932 1.13136 1.22512 1.22336 0.81737 0.86088 0.81967 1.90720 1.42306 1.81418 1.27149 1.21783 1.00121 0.87532 0.93925 0.88949 1.59017 1.18743 1.49458 1.06271 1.21642 0.98147 0.98348 0.95070 1.19007 0.94552 0.89995 0.96935 1.21278 1.03879 1.04225 1.26638 0.93044 1.24986 0.95042 0.97622 0.96627 1.69974 1.18340 1.20475 1.44387 0.86663 0.80750 0.79530 0.81441 1.20782 1.21262 1.19989 0.92871 0.93100 0.92737 0.92736 0.92684 0.92584 0.91107 0.95307 0.91670 0.90434 0.90219 0.90403 0.89924 0.91480 0.89252 0.85610 0.83898 0.92976 0.92906 0.96985 0.94714 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 7.91 37.16 0.29 -1.11 16 2 C -0.08 -0.84 0.58 -154.51 -0.09 -0.93 16 3 C -0.14 -1.22 8.01 37.16 0.30 -0.92 16 4 C -0.13 -1.67 6.97 37.15 0.26 -1.41 16 5 C 0.14 1.65 2.34 -66.95 -0.16 1.49 16 6 H 0.07 0.91 7.98 -51.93 -0.41 0.49 16 7 C -0.13 -1.11 5.14 -24.90 -0.13 -1.24 16 8 C -0.13 -1.20 7.10 -24.46 -0.17 -1.37 16 9 C 0.09 1.05 6.41 -2.41 -0.02 1.03 16 10 N -0.61 -7.95 2.06 -162.88 -0.34 -8.29 16 11 C 0.49 7.73 6.36 -10.99 -0.07 7.66 16 12 O -0.54 -9.34 11.01 5.56 0.06 -9.28 16 13 C 0.08 1.40 2.42 -68.86 -0.17 1.23 16 14 H 0.09 1.53 7.63 -51.93 -0.40 1.14 16 15 N -0.81 -13.77 8.44 -5.65 -0.05 -13.82 16 16 C -0.09 -1.91 4.63 -26.73 -0.12 -2.04 16 17 C 0.03 0.83 4.86 -27.88 -0.14 0.69 16 18 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 19 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 22 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 26 H 0.05 0.48 6.41 -51.93 -0.33 0.15 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.65 7.18 -51.93 -0.37 0.28 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.47 8.12 -51.93 -0.42 0.04 16 31 H 0.06 0.42 6.69 -51.93 -0.35 0.07 16 32 H 0.07 1.08 5.70 -51.93 -0.30 0.78 16 33 H 0.03 0.35 7.88 -51.93 -0.41 -0.06 16 34 H 0.06 0.99 6.55 -51.93 -0.34 0.65 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.62 5.51 -51.93 -0.29 0.33 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.14 6.11 -51.93 -0.32 0.83 16 41 H 0.33 4.95 9.06 -39.29 -0.36 4.59 16 42 H 0.35 6.00 8.58 -39.29 -0.34 5.66 16 43 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.05 1.03 6.72 -51.93 -0.35 0.68 16 45 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 351.99 15.07 5.30 5.30 Total: -1.00 -30.98 351.99 -8.22 -39.21 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -8.30 Total: 6.74 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -0.62 Total: -10.41 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 0.35 Total: -48.29 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.06 Total: -9.28 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.98 -8.22 -39.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424115705.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.688 kcal (2) G-P(sol) polarization free energy of solvation -30.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds