Wall clock time and date at job start Tue Mar 31 2020 05:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46988 * 2 1 4 4 C 1.52991 * 109.47426 * 240.00071 * 2 1 3 5 5 C 1.53004 * 109.46904 * 119.99784 * 2 1 3 6 6 H 1.09004 * 109.99428 * 173.16318 * 5 2 1 7 7 C 1.54325 * 109.88091 * 294.25984 * 5 2 1 8 8 C 1.55155 * 102.93795 * 141.61255 * 7 5 2 9 9 C 1.55133 * 101.48713 * 324.33296 * 8 7 5 10 10 N 1.47014 * 109.88164 * 52.07172 * 5 2 1 11 11 C 1.34779 * 125.65316 * 61.60040 * 10 5 2 12 12 O 1.21283 * 119.99639 * 358.44625 * 11 10 5 13 13 C 1.50697 * 120.00153 * 178.17185 * 11 10 5 14 14 H 1.09000 * 109.47281 * 40.28357 * 13 11 10 15 15 N 1.46912 * 109.46814 * 160.27671 * 13 11 10 16 16 C 1.52998 * 109.47157 * 280.27579 * 13 11 10 17 17 C 1.53007 * 109.46835 * 175.00200 * 16 13 11 18 18 C 1.50698 * 109.46632 * 180.02562 * 17 16 13 19 19 H 1.07993 * 120.00416 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99669 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00028 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00067 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47320 * 89.99420 * 22 20 18 24 24 H 1.48499 * 109.47376 * 209.99637 * 22 20 18 25 25 H 1.48504 * 109.47052 * 329.99851 * 22 20 18 26 26 H 1.08991 * 109.47325 * 300.00043 * 1 2 3 27 27 H 1.09003 * 109.47112 * 59.99897 * 1 2 3 28 28 H 1.08993 * 109.46830 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47130 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.47278 * 300.00001 * 3 2 1 31 31 H 1.09005 * 109.47091 * 59.99788 * 3 2 1 32 32 H 1.09003 * 109.47134 * 325.95644 * 4 2 1 33 33 H 1.09004 * 109.47181 * 85.95702 * 4 2 1 34 34 H 1.08998 * 109.47642 * 205.95259 * 4 2 1 35 35 H 1.08996 * 110.71912 * 259.96907 * 7 5 2 36 36 H 1.08991 * 110.72192 * 23.25179 * 7 5 2 37 37 H 1.09001 * 111.00822 * 82.57205 * 8 7 5 38 38 H 1.09002 * 111.00659 * 206.38559 * 8 7 5 39 39 H 1.09001 * 110.49207 * 278.45466 * 9 8 7 40 40 H 1.08994 * 110.34520 * 156.06737 * 9 8 7 41 41 H 1.00899 * 110.99791 * 296.04598 * 15 13 11 42 42 H 1.00901 * 110.99513 * 60.00249 * 15 13 11 43 43 H 1.09001 * 109.47327 * 294.99745 * 16 13 11 44 44 H 1.08992 * 109.47010 * 55.00423 * 16 13 11 45 45 H 1.09001 * 109.46792 * 299.99873 * 17 16 13 46 46 H 1.08992 * 109.47139 * 60.00302 * 17 16 13 47 47 H 0.96996 * 119.99674 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 3.1231 -0.8330 1.1991 7 6 1.6527 0.0779 2.5115 8 6 1.2860 -1.0351 3.5284 9 6 0.6217 -2.0903 2.6054 10 7 1.4054 -2.0429 1.3576 11 6 1.5168 -3.0437 0.4617 12 8 2.1641 -2.8816 -0.5510 13 6 0.8423 -4.3660 0.7213 14 1 -0.1434 -4.1925 1.1529 15 7 0.7007 -5.1000 -0.5434 16 6 1.6885 -5.1876 1.6959 17 6 0.9451 -6.4754 2.0563 18 6 1.7784 -7.2843 3.0167 19 1 2.7419 -6.9169 3.3375 20 6 1.3110 -8.4940 3.4850 21 7 0.1378 -8.9416 3.0940 22 14 2.3435 -9.4964 4.6761 23 1 2.0075 -9.1091 6.0697 24 1 2.0604 -10.9412 4.4819 25 1 3.7835 -9.2358 4.4234 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.3584 -1.5326 -1.5040 33 1 2.0929 -0.0167 -2.0793 34 1 3.0324 -1.1279 -1.0543 35 1 2.4979 0.6651 2.8706 36 1 0.7931 0.7181 2.3139 37 1 2.1792 -1.4368 4.0070 38 1 0.5788 -0.6675 4.2719 39 1 -0.4178 -1.8265 2.4107 40 1 0.6846 -3.0808 3.0556 41 1 0.0928 -4.6080 -1.1809 42 1 1.6015 -5.2733 -0.9636 43 1 2.6414 -5.4368 1.2289 44 1 1.8681 -4.6064 2.6003 45 1 -0.0078 -6.2262 2.5233 46 1 0.7656 -7.0566 1.1519 47 1 -0.1911 -9.7924 3.4237 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424115705.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:09 Heat of formation + Delta-G solvation = -64.109706 kcal Electronic energy + Delta-G solvation = -24015.292404 eV Core-core repulsion = 20810.678283 eV Total energy + Delta-G solvation = -3204.614121 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.85382 -39.22577 -37.01285 -36.25909 -34.78673 -32.60092 -31.92775 -29.36354 -28.49045 -28.17600 -27.69738 -25.77933 -24.02844 -22.30465 -22.14216 -20.67079 -19.07287 -18.55231 -18.24063 -17.57804 -16.93694 -16.60136 -16.33990 -15.67210 -15.33355 -15.23730 -14.77935 -14.58988 -14.34236 -14.21398 -13.80765 -13.65173 -13.57536 -13.38179 -13.30791 -12.89897 -12.79420 -12.68966 -12.50254 -12.42788 -12.28472 -11.98068 -11.96965 -11.71688 -11.67014 -11.41773 -11.31001 -11.24928 -11.11719 -10.74258 -10.49073 -9.57611 -9.46743 -8.14240 -6.24859 1.41125 1.42771 1.53267 1.58923 2.05873 2.44248 3.18602 3.44975 3.60504 3.63051 3.80721 3.88032 4.03677 4.08900 4.10682 4.22890 4.31873 4.45373 4.49400 4.58789 4.71045 4.77349 4.78549 4.85777 4.88866 4.94638 4.96812 5.01288 5.03819 5.11130 5.14801 5.21758 5.23739 5.29706 5.36768 5.48299 5.55766 5.59169 5.62231 5.82478 5.97168 6.10244 6.29562 6.49151 6.55414 6.93158 7.19236 7.43329 8.97007 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026016 B = 0.004108 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.017281 B = 6813.636066 C = 7358.197513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.076 4.076 3 C -0.134 4.134 4 C -0.118 4.118 5 C 0.138 3.862 6 H 0.052 0.948 7 C -0.119 4.119 8 C -0.126 4.126 9 C 0.084 3.916 10 N -0.604 5.604 11 C 0.491 3.509 12 O -0.558 6.558 13 C 0.091 3.909 14 H 0.097 0.903 15 N -0.818 5.818 16 C -0.078 4.078 17 C 0.043 3.957 18 C -0.544 4.544 19 H 0.054 0.946 20 C 0.003 3.997 21 N -0.929 5.929 22 Si 0.960 3.040 23 H -0.269 1.269 24 H -0.283 1.283 25 H -0.268 1.268 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.033 0.967 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.036 0.964 34 H 0.039 0.961 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.344 0.656 42 H 0.344 0.656 43 H 0.038 0.962 44 H 0.062 0.938 45 H -0.007 1.007 46 H 0.004 0.996 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.361 23.507 -1.373 23.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.076 4.076 3 C -0.191 4.191 4 C -0.175 4.175 5 C 0.035 3.965 6 H 0.070 0.930 7 C -0.157 4.157 8 C -0.164 4.164 9 C -0.038 4.038 10 N -0.337 5.337 11 C 0.278 3.722 12 O -0.437 6.437 13 C -0.025 4.025 14 H 0.115 0.885 15 N -0.347 5.347 16 C -0.116 4.116 17 C 0.005 3.995 18 C -0.582 4.582 19 H 0.072 0.928 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.784 3.216 23 H -0.195 1.195 24 H -0.209 1.209 25 H -0.192 1.192 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.127 0.873 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.157 0.843 42 H 0.158 0.842 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.011 0.989 46 H 0.023 0.977 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.269 22.781 -1.502 22.832 hybrid contribution 0.854 -0.365 -0.183 0.947 sum 1.123 22.416 -1.684 22.507 Atomic orbital electron populations 1.21814 0.93957 1.00751 1.02246 1.20916 0.96343 0.96246 0.94138 1.21856 1.00911 0.93461 1.02893 1.22113 1.01126 0.97934 0.96371 1.21878 0.96046 0.82229 0.96388 0.92960 1.22795 1.03530 0.97206 0.92132 1.22820 1.01582 0.94764 0.97240 1.22692 0.95927 1.01271 0.83897 1.48608 1.49450 1.13310 1.22287 1.21852 0.81692 0.86257 0.82368 1.90731 1.43121 1.81808 1.28090 1.21522 0.99776 0.88055 0.93154 0.88500 1.58990 1.18913 1.50152 1.06633 1.21343 0.97245 0.96681 0.96319 1.18795 0.94005 0.91743 0.94912 1.21701 1.04277 1.05018 1.27217 0.92799 1.25893 0.96245 0.98865 0.98451 1.70106 1.20073 1.21046 1.45706 0.85535 0.79113 0.77644 0.79264 1.19477 1.20884 1.19217 0.90792 0.92647 0.94804 0.92901 0.92206 0.90460 0.93435 0.94500 0.94155 0.88600 0.88472 0.91108 0.87338 0.89918 0.91181 0.84252 0.84198 0.94306 0.91915 0.98900 0.97744 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 7.91 71.98 0.57 -1.86 16 2 C -0.08 -1.52 0.58 -52.18 -0.03 -1.55 16 3 C -0.13 -1.97 8.01 71.98 0.58 -1.39 16 4 C -0.12 -3.15 6.97 71.98 0.50 -2.65 16 5 C 0.14 2.93 2.34 45.34 0.11 3.04 16 6 H 0.05 1.31 7.98 -2.38 -0.02 1.30 16 7 C -0.12 -1.61 5.14 31.78 0.16 -1.45 16 8 C -0.13 -1.90 7.10 32.06 0.23 -1.67 16 9 C 0.08 1.78 6.41 86.93 0.56 2.34 16 10 N -0.60 -15.44 2.06 -787.62 -1.62 -17.06 16 11 C 0.49 15.73 6.36 87.66 0.56 16.29 16 12 O -0.56 -19.98 11.01 -3.04 -0.03 -20.02 16 13 C 0.09 3.17 2.42 44.16 0.11 3.28 16 14 H 0.10 3.29 7.63 -2.39 -0.02 3.27 16 15 N -0.82 -28.99 8.44 -171.79 -1.45 -30.44 16 16 C -0.08 -3.26 4.63 30.60 0.14 -3.12 16 17 C 0.04 2.26 4.86 29.85 0.15 2.41 16 18 C -0.54 -31.30 9.11 25.60 0.23 -31.07 16 19 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 20 C 0.00 0.20 5.46 84.66 0.46 0.66 16 21 N -0.93 -56.99 13.29 21.45 0.28 -56.70 16 22 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 H 0.07 1.06 6.41 -2.39 -0.02 1.04 16 27 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.03 0.76 7.18 -2.39 -0.02 0.75 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.84 8.12 -2.39 -0.02 0.82 16 31 H 0.08 0.83 6.69 -2.38 -0.02 0.81 16 32 H 0.05 1.48 5.70 -2.39 -0.01 1.47 16 33 H 0.04 0.88 7.88 -2.38 -0.02 0.86 16 34 H 0.04 1.25 6.55 -2.39 -0.02 1.24 16 35 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.10 1.03 5.51 -2.39 -0.01 1.01 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.07 1.76 6.11 -2.39 -0.01 1.75 16 41 H 0.34 10.60 9.06 -89.69 -0.81 9.78 16 42 H 0.34 12.45 8.58 -89.69 -0.77 11.68 16 43 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.06 2.48 6.72 -2.39 -0.02 2.46 16 45 H -0.01 -0.42 8.14 -2.39 -0.02 -0.43 16 46 H 0.00 0.24 7.75 -2.39 -0.02 0.22 16 47 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -68.43 351.99 2.90 -65.54 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: -0.63 Total: 28.73 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 4.32 Total: -16.74 kcal Atomic # 7 Polarization: -101.41 SS G_CDS: -2.79 Total: -104.20 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.03 Total: -20.02 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -68.43 2.90 -65.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424115705.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.426 kcal (2) G-P(sol) polarization free energy of solvation -68.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds