Wall clock time and date at job start Tue Mar 31 2020 05:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47600 * 2 1 4 4 C 1.53005 * 109.46852 * 239.99858 * 2 1 3 5 5 C 1.53006 * 109.47027 * 120.00271 * 2 1 3 6 6 H 1.09002 * 109.87137 * 305.84240 * 5 2 1 7 7 C 1.54320 * 110.01067 * 184.74254 * 5 2 1 8 8 C 1.55156 * 102.94413 * 218.31551 * 7 5 2 9 9 C 1.54693 * 101.67452 * 35.33889 * 8 7 5 10 10 N 1.47017 * 109.88181 * 66.85620 * 5 2 1 11 11 C 1.34775 * 125.65046 * 298.47777 * 10 5 2 12 12 O 1.21277 * 119.99911 * 353.62813 * 11 10 5 13 13 C 1.50709 * 120.00132 * 173.62812 * 11 10 5 14 14 H 1.08995 * 109.46784 * 39.99965 * 13 11 10 15 15 N 1.46895 * 109.46871 * 159.99982 * 13 11 10 16 16 C 1.52999 * 109.46805 * 279.99991 * 13 11 10 17 17 C 1.53002 * 109.46924 * 175.00175 * 16 13 11 18 18 C 1.50699 * 109.46873 * 179.97438 * 17 16 13 19 19 H 1.07999 * 120.00578 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99826 * 179.97438 * 18 17 16 21 21 N 1.31519 * 120.00266 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 120.00072 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47245 * 89.99923 * 22 20 18 24 24 H 1.48505 * 109.47124 * 210.00318 * 22 20 18 25 25 H 1.48507 * 109.47118 * 329.99652 * 22 20 18 26 26 H 1.09008 * 109.46865 * 280.43656 * 1 2 3 27 27 H 1.08999 * 109.46745 * 40.43182 * 1 2 3 28 28 H 1.08995 * 109.47513 * 160.42971 * 1 2 3 29 29 H 1.08992 * 109.47240 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47048 * 300.00052 * 3 2 1 31 31 H 1.09006 * 109.46884 * 59.99893 * 3 2 1 32 32 H 1.08998 * 109.47059 * 300.00002 * 4 2 1 33 33 H 1.08994 * 109.46714 * 60.00482 * 4 2 1 34 34 H 1.09001 * 109.46995 * 180.02562 * 4 2 1 35 35 H 1.09004 * 110.71996 * 336.68025 * 7 5 2 36 36 H 1.09000 * 110.71923 * 99.77385 * 7 5 2 37 37 H 1.09001 * 111.00514 * 153.57451 * 8 7 5 38 38 H 1.08993 * 111.00584 * 277.39153 * 8 7 5 39 39 H 1.09000 * 110.39280 * 204.36681 * 9 8 7 40 40 H 1.09001 * 110.24209 * 82.11273 * 9 8 7 41 41 H 1.00903 * 111.00126 * 296.04205 * 15 13 11 42 42 H 1.00896 * 111.00571 * 60.00298 * 15 13 11 43 43 H 1.09002 * 109.47488 * 55.00145 * 16 13 11 44 44 H 1.09003 * 109.46842 * 294.99586 * 16 13 11 45 45 H 1.09003 * 109.46880 * 299.99387 * 17 16 13 46 46 H 1.09002 * 109.47063 * 59.99709 * 17 16 13 47 47 H 0.97000 * 120.00296 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2493 6 1 1.5975 -0.2764 2.1406 7 6 3.5784 -0.6256 1.3232 8 6 3.9881 -2.0223 1.8606 9 6 2.9398 -2.9375 1.1849 10 7 1.6943 -2.1486 1.1786 11 6 0.4456 -2.6525 1.1232 12 8 -0.5111 -1.9172 1.2455 13 6 0.2380 -4.1298 0.9091 14 1 0.9773 -4.6876 1.4838 15 7 -1.1114 -4.5040 1.3530 16 6 0.3949 -4.4567 -0.5773 17 6 0.3080 -5.9710 -0.7784 18 6 0.4619 -6.2928 -2.2425 19 1 0.6068 -5.4971 -2.9581 20 6 0.4179 -7.6034 -2.6685 21 7 0.5517 -7.8844 -3.9464 22 14 0.1667 -8.9799 -1.4309 23 1 -1.2861 -9.2433 -1.2715 24 1 0.8427 -10.2104 -1.9151 25 1 0.7439 -8.5804 -0.1222 26 1 -0.3633 0.1862 1.0107 27 1 -0.3633 0.7822 -0.6665 28 1 -0.3634 -0.9682 -0.3442 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7490 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.1299 -0.7217 -1.2491 35 1 4.0022 -0.4536 0.3338 36 1 3.8831 0.1608 2.0138 37 1 4.9981 -2.2821 1.5436 38 1 3.8984 -2.0651 2.9460 39 1 2.8062 -3.8525 1.7620 40 1 3.2453 -3.1722 0.1653 41 1 -1.2190 -4.3579 2.3456 42 1 -1.8153 -4.0000 0.8349 43 1 1.3628 -4.0985 -0.9279 44 1 -0.3995 -3.9690 -1.1423 45 1 1.1024 -6.4586 -0.2133 46 1 -0.6599 -6.3291 -0.4277 47 1 0.5203 -8.8064 -4.2461 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424115706.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:13 Heat of formation + Delta-G solvation = -45.675770 kcal Electronic energy + Delta-G solvation = -24254.305142 eV Core-core repulsion = 21050.490377 eV Total energy + Delta-G solvation = -3203.814765 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.83460 -38.14752 -35.78235 -35.09675 -32.73476 -31.71795 -30.46107 -28.51198 -27.33699 -27.21145 -26.54689 -24.29703 -22.59521 -21.51461 -20.30628 -19.53325 -18.04119 -17.29975 -16.80681 -16.45259 -15.68123 -15.47937 -14.58210 -14.44150 -14.11746 -14.06228 -13.63258 -13.50672 -13.30238 -12.88484 -12.63548 -12.56297 -12.39386 -12.27413 -12.10901 -11.78568 -11.72910 -11.40496 -11.29002 -11.19296 -11.00097 -10.84181 -10.61522 -10.42566 -10.37174 -10.11723 -9.94444 -9.68720 -9.46743 -9.09063 -8.51317 -8.46087 -8.30313 -5.98426 -3.95799 2.76730 3.08032 3.38063 3.44510 3.49947 4.32559 4.39560 4.52166 4.61320 4.82724 4.84769 4.91724 4.98646 5.06664 5.21621 5.31067 5.35705 5.38456 5.46838 5.54324 5.59479 5.63552 5.68646 5.74782 5.76164 5.83405 5.89555 5.93049 6.00118 6.09974 6.18425 6.24742 6.34922 6.41495 6.46196 6.55422 6.71032 6.90998 7.30580 7.40421 7.57349 7.63648 7.69376 7.87781 8.31946 8.59363 9.06409 9.64808 11.15105 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021102 B = 0.004617 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.564386 B = 6063.471412 C = 6125.882172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.077 4.077 3 C -0.138 4.138 4 C -0.140 4.140 5 C 0.147 3.853 6 H 0.069 0.931 7 C -0.131 4.131 8 C -0.133 4.133 9 C 0.097 3.903 10 N -0.608 5.608 11 C 0.493 3.507 12 O -0.537 6.537 13 C 0.077 3.923 14 H 0.094 0.906 15 N -0.812 5.812 16 C -0.084 4.084 17 C -0.003 4.003 18 C -0.520 4.520 19 H 0.068 0.932 20 C 0.066 3.934 21 N -0.907 5.907 22 Si 0.882 3.118 23 H -0.277 1.277 24 H -0.291 1.291 25 H -0.265 1.265 26 H 0.059 0.941 27 H 0.033 0.967 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.334 0.666 42 H 0.349 0.651 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.011 0.989 46 H 0.028 0.972 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.074 15.968 12.936 21.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.078 4.078 3 C -0.196 4.196 4 C -0.197 4.197 5 C 0.043 3.957 6 H 0.087 0.913 7 C -0.168 4.168 8 C -0.171 4.171 9 C -0.026 4.026 10 N -0.343 5.343 11 C 0.281 3.719 12 O -0.415 6.415 13 C -0.038 4.038 14 H 0.112 0.888 15 N -0.340 5.340 16 C -0.122 4.122 17 C -0.041 4.041 18 C -0.558 4.558 19 H 0.087 0.913 20 C -0.135 4.135 21 N -0.546 5.546 22 Si 0.709 3.291 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.189 1.189 26 H 0.078 0.922 27 H 0.052 0.948 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.146 0.854 42 H 0.163 0.837 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.030 0.970 46 H 0.047 0.953 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.643 15.412 12.620 20.998 hybrid contribution -0.128 0.254 0.754 0.806 sum 6.514 15.666 13.374 21.604 Atomic orbital electron populations 1.22216 0.92922 1.02039 1.01643 1.20934 0.97017 0.94881 0.94955 1.21882 1.00730 0.95316 1.01696 1.21906 1.00405 1.01004 0.96434 1.21644 0.94491 0.82101 0.97469 0.91297 1.22787 0.94193 0.97487 1.02376 1.22740 0.98979 0.94836 1.00561 1.22357 0.83796 0.94918 1.01550 1.48593 1.05695 1.06683 1.73311 1.22166 0.81278 0.92727 0.75702 1.90689 1.40397 1.60570 1.49821 1.21837 0.93095 0.87943 1.00956 0.88827 1.59047 1.02788 1.63243 1.08913 1.21421 1.01018 1.00681 0.89099 1.19475 0.97239 0.90270 0.97095 1.21175 1.49441 0.93523 0.91625 0.91349 1.25007 0.94651 0.98798 0.94998 1.69927 1.51196 1.19229 1.14267 0.86747 0.78672 0.81427 0.82217 1.20293 1.21728 1.18925 0.92202 0.94781 0.90872 0.92585 0.92545 0.92898 0.92026 0.92881 0.92840 0.89912 0.90444 0.89746 0.90879 0.90386 0.90610 0.85420 0.83693 0.92300 0.92429 0.97026 0.95320 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 6.86 37.16 0.25 -1.59 16 2 C -0.08 -0.89 0.58 -154.50 -0.09 -0.98 16 3 C -0.14 -1.30 8.07 37.16 0.30 -1.00 16 4 C -0.14 -1.73 7.96 37.16 0.30 -1.44 16 5 C 0.15 1.63 2.32 -66.95 -0.16 1.48 16 6 H 0.07 0.83 8.03 -51.93 -0.42 0.41 16 7 C -0.13 -1.08 5.16 -24.90 -0.13 -1.21 16 8 C -0.13 -1.06 7.07 -24.70 -0.17 -1.23 16 9 C 0.10 1.03 6.53 -2.64 -0.02 1.01 16 10 N -0.61 -7.66 2.09 -163.15 -0.34 -8.00 16 11 C 0.49 7.46 6.04 -10.98 -0.07 7.39 16 12 O -0.54 -9.10 11.68 5.56 0.06 -9.03 16 13 C 0.08 1.24 2.63 -68.86 -0.18 1.06 16 14 H 0.09 1.42 6.87 -51.93 -0.36 1.06 16 15 N -0.81 -12.87 8.44 -5.66 -0.05 -12.92 16 16 C -0.08 -1.63 4.78 -26.73 -0.13 -1.76 16 17 C 0.00 -0.08 3.93 -27.88 -0.11 -0.19 16 18 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 19 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 20 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 21 N -0.91 -28.19 13.96 55.43 0.77 -27.42 16 22 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 26 H 0.06 0.90 6.92 -51.92 -0.36 0.54 16 27 H 0.03 0.44 7.98 -51.93 -0.41 0.03 16 28 H 0.07 1.23 5.49 -51.93 -0.28 0.94 16 29 H 0.06 0.45 6.76 -51.93 -0.35 0.10 16 30 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.90 7.24 -51.93 -0.38 0.53 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.58 6.36 -51.93 -0.33 0.25 16 35 H 0.08 0.67 5.52 -51.93 -0.29 0.39 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.80 7.02 -51.93 -0.36 0.44 16 40 H 0.08 0.85 8.01 -51.93 -0.42 0.44 16 41 H 0.33 4.59 9.06 -39.29 -0.36 4.23 16 42 H 0.35 5.65 8.58 -39.29 -0.34 5.31 16 43 H 0.06 1.11 7.90 -51.93 -0.41 0.70 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 46 H 0.03 0.70 7.18 -51.93 -0.37 0.33 16 47 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 350.87 15.07 5.29 5.29 Total: -1.00 -31.73 350.87 -7.91 -39.64 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -8.35 Total: 6.79 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -0.63 Total: -11.76 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.39 Total: -48.33 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.06 Total: -9.03 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.73 -7.91 -39.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424115706.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.037 kcal (2) G-P(sol) polarization free energy of solvation -31.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds