Wall clock time and date at job start Tue Mar 31 2020 05:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47600 * 2 1 4 4 C 1.53005 * 109.46852 * 239.99858 * 2 1 3 5 5 C 1.53006 * 109.47027 * 120.00271 * 2 1 3 6 6 H 1.09002 * 109.87137 * 305.84240 * 5 2 1 7 7 C 1.54320 * 110.01067 * 184.74254 * 5 2 1 8 8 C 1.55156 * 102.94413 * 218.31551 * 7 5 2 9 9 C 1.54693 * 101.67452 * 35.33889 * 8 7 5 10 10 N 1.47017 * 109.88181 * 66.85620 * 5 2 1 11 11 C 1.34775 * 125.65046 * 298.47777 * 10 5 2 12 12 O 1.21277 * 119.99911 * 353.62813 * 11 10 5 13 13 C 1.50709 * 120.00132 * 173.62812 * 11 10 5 14 14 H 1.08995 * 109.46784 * 39.99965 * 13 11 10 15 15 N 1.46895 * 109.46871 * 159.99982 * 13 11 10 16 16 C 1.52999 * 109.46805 * 279.99991 * 13 11 10 17 17 C 1.53002 * 109.46924 * 175.00175 * 16 13 11 18 18 C 1.50699 * 109.46873 * 179.97438 * 17 16 13 19 19 H 1.07999 * 120.00578 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99826 * 179.97438 * 18 17 16 21 21 N 1.31519 * 120.00266 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 120.00072 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47245 * 89.99923 * 22 20 18 24 24 H 1.48505 * 109.47124 * 210.00318 * 22 20 18 25 25 H 1.48507 * 109.47118 * 329.99652 * 22 20 18 26 26 H 1.09008 * 109.46865 * 280.43656 * 1 2 3 27 27 H 1.08999 * 109.46745 * 40.43182 * 1 2 3 28 28 H 1.08995 * 109.47513 * 160.42971 * 1 2 3 29 29 H 1.08992 * 109.47240 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47048 * 300.00052 * 3 2 1 31 31 H 1.09006 * 109.46884 * 59.99893 * 3 2 1 32 32 H 1.08998 * 109.47059 * 300.00002 * 4 2 1 33 33 H 1.08994 * 109.46714 * 60.00482 * 4 2 1 34 34 H 1.09001 * 109.46995 * 180.02562 * 4 2 1 35 35 H 1.09004 * 110.71996 * 336.68025 * 7 5 2 36 36 H 1.09000 * 110.71923 * 99.77385 * 7 5 2 37 37 H 1.09001 * 111.00514 * 153.57451 * 8 7 5 38 38 H 1.08993 * 111.00584 * 277.39153 * 8 7 5 39 39 H 1.09000 * 110.39280 * 204.36681 * 9 8 7 40 40 H 1.09001 * 110.24209 * 82.11273 * 9 8 7 41 41 H 1.00903 * 111.00126 * 296.04205 * 15 13 11 42 42 H 1.00896 * 111.00571 * 60.00298 * 15 13 11 43 43 H 1.09002 * 109.47488 * 55.00145 * 16 13 11 44 44 H 1.09003 * 109.46842 * 294.99586 * 16 13 11 45 45 H 1.09003 * 109.46880 * 299.99387 * 17 16 13 46 46 H 1.09002 * 109.47063 * 59.99709 * 17 16 13 47 47 H 0.97000 * 120.00296 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2493 6 1 1.5975 -0.2764 2.1406 7 6 3.5784 -0.6256 1.3232 8 6 3.9881 -2.0223 1.8606 9 6 2.9398 -2.9375 1.1849 10 7 1.6943 -2.1486 1.1786 11 6 0.4456 -2.6525 1.1232 12 8 -0.5111 -1.9172 1.2455 13 6 0.2380 -4.1298 0.9091 14 1 0.9773 -4.6876 1.4838 15 7 -1.1114 -4.5040 1.3530 16 6 0.3949 -4.4567 -0.5773 17 6 0.3080 -5.9710 -0.7784 18 6 0.4619 -6.2928 -2.2425 19 1 0.6068 -5.4971 -2.9581 20 6 0.4179 -7.6034 -2.6685 21 7 0.5517 -7.8844 -3.9464 22 14 0.1667 -8.9799 -1.4309 23 1 -1.2861 -9.2433 -1.2715 24 1 0.8427 -10.2104 -1.9151 25 1 0.7439 -8.5804 -0.1222 26 1 -0.3633 0.1862 1.0107 27 1 -0.3633 0.7822 -0.6665 28 1 -0.3634 -0.9682 -0.3442 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 -1.7490 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.1299 -0.7217 -1.2491 35 1 4.0022 -0.4536 0.3338 36 1 3.8831 0.1608 2.0138 37 1 4.9981 -2.2821 1.5436 38 1 3.8984 -2.0651 2.9460 39 1 2.8062 -3.8525 1.7620 40 1 3.2453 -3.1722 0.1653 41 1 -1.2190 -4.3579 2.3456 42 1 -1.8153 -4.0000 0.8349 43 1 1.3628 -4.0985 -0.9279 44 1 -0.3995 -3.9690 -1.1423 45 1 1.1024 -6.4586 -0.2133 46 1 -0.6599 -6.3291 -0.4277 47 1 0.5203 -8.8064 -4.2461 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424115706.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:12 Heat of formation + Delta-G solvation = -66.298988 kcal Electronic energy + Delta-G solvation = -24255.199432 eV Core-core repulsion = 21050.490377 eV Total energy + Delta-G solvation = -3204.709055 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.86473 -39.24216 -36.97464 -36.35653 -34.76738 -32.62848 -32.27819 -29.40987 -28.55076 -28.18706 -27.90475 -25.68670 -23.87684 -22.27931 -22.03774 -20.66708 -19.15877 -18.78519 -18.35826 -17.54808 -16.89979 -16.82015 -16.14272 -15.59532 -15.40101 -15.21664 -14.80296 -14.69196 -14.57383 -14.20127 -14.02718 -13.74489 -13.55669 -13.42822 -13.32018 -12.92675 -12.82604 -12.68808 -12.59117 -12.33085 -12.00787 -12.00127 -11.88831 -11.78070 -11.62008 -11.55991 -11.34339 -11.27299 -11.24240 -10.84131 -10.70982 -9.66243 -9.44712 -8.25509 -6.28800 1.40524 1.41821 1.54481 1.56954 2.07177 2.40691 3.11058 3.43301 3.60307 3.62052 3.79368 3.87071 3.99395 4.02521 4.11423 4.22673 4.26279 4.45025 4.47715 4.60030 4.68300 4.74733 4.76260 4.78600 4.84101 4.89825 4.97301 4.99662 5.00913 5.09000 5.12904 5.15312 5.22373 5.27713 5.34757 5.46719 5.48391 5.55623 5.57262 5.63613 5.71355 6.06626 6.31749 6.48194 6.55835 6.79142 7.16907 7.35727 8.91471 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021102 B = 0.004617 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.564386 B = 6063.471412 C = 6125.882172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.075 4.075 3 C -0.133 4.133 4 C -0.136 4.136 5 C 0.142 3.858 6 H 0.062 0.938 7 C -0.123 4.123 8 C -0.122 4.122 9 C 0.085 3.915 10 N -0.605 5.605 11 C 0.492 3.508 12 O -0.560 6.560 13 C 0.086 3.914 14 H 0.110 0.890 15 N -0.818 5.818 16 C -0.071 4.071 17 C 0.005 3.995 18 C -0.530 4.530 19 H 0.026 0.974 20 C 0.005 3.995 21 N -0.954 5.954 22 Si 0.952 3.048 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.242 1.242 26 H 0.047 0.953 27 H 0.036 0.964 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.348 0.652 42 H 0.345 0.655 43 H 0.059 0.941 44 H 0.034 0.966 45 H 0.022 0.978 46 H 0.025 0.975 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.904 16.397 15.478 24.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.076 4.076 3 C -0.191 4.191 4 C -0.193 4.193 5 C 0.038 3.962 6 H 0.080 0.920 7 C -0.161 4.161 8 C -0.160 4.160 9 C -0.037 4.037 10 N -0.338 5.338 11 C 0.279 3.721 12 O -0.440 6.440 13 C -0.029 4.029 14 H 0.127 0.873 15 N -0.347 5.347 16 C -0.109 4.109 17 C -0.032 4.032 18 C -0.568 4.568 19 H 0.045 0.955 20 C -0.191 4.191 21 N -0.595 5.595 22 Si 0.776 3.224 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.166 1.166 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.161 0.839 42 H 0.158 0.842 43 H 0.078 0.922 44 H 0.053 0.947 45 H 0.040 0.960 46 H 0.044 0.956 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.507 15.864 15.183 23.549 hybrid contribution -0.709 0.184 -0.140 0.745 sum 7.798 16.048 15.043 23.338 Atomic orbital electron populations 1.22091 0.95130 1.00177 1.00629 1.20927 0.95089 0.96674 0.94913 1.21835 1.02006 0.93229 1.01984 1.21863 1.01585 0.99145 0.96756 1.21809 0.96824 0.80855 0.96680 0.91989 1.22805 0.91339 0.98510 1.03401 1.22735 0.98888 0.93535 1.00823 1.22587 0.83694 0.95786 1.01629 1.48619 1.05503 1.07953 1.71757 1.21849 0.82031 0.92113 0.76080 1.90686 1.41409 1.60788 1.51091 1.21606 0.93753 0.89197 0.98357 0.87254 1.59029 1.02533 1.63277 1.09907 1.21154 1.00281 0.97753 0.91746 1.19346 0.97137 0.93006 0.93736 1.21521 1.48975 0.92705 0.93616 0.95518 1.25982 0.94289 1.01798 0.97046 1.70081 1.52708 1.20087 1.16669 0.85626 0.78860 0.77701 0.80213 1.19786 1.21096 1.16556 0.93396 0.94528 0.94044 0.90472 0.92664 0.92284 0.95028 0.93347 0.90817 0.89400 0.88117 0.87702 0.89957 0.89893 0.91470 0.83905 0.84166 0.92229 0.94681 0.95960 0.95615 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.53 6.86 71.98 0.49 -3.04 16 2 C -0.08 -1.67 0.58 -52.18 -0.03 -1.70 16 3 C -0.13 -2.18 8.07 71.98 0.58 -1.60 16 4 C -0.14 -3.31 7.96 71.98 0.57 -2.73 16 5 C 0.14 2.90 2.32 45.34 0.11 3.00 16 6 H 0.06 1.39 8.03 -2.39 -0.02 1.37 16 7 C -0.12 -1.59 5.16 31.78 0.16 -1.42 16 8 C -0.12 -1.50 7.07 31.91 0.23 -1.27 16 9 C 0.09 1.64 6.53 86.78 0.57 2.20 16 10 N -0.61 -14.61 2.09 -788.46 -1.64 -16.26 16 11 C 0.49 14.83 6.04 87.66 0.53 15.36 16 12 O -0.56 -19.33 11.68 -3.02 -0.04 -19.36 16 13 C 0.09 2.72 2.63 44.17 0.12 2.84 16 14 H 0.11 3.10 6.87 -2.39 -0.02 3.08 16 15 N -0.82 -25.46 8.44 -171.81 -1.45 -26.91 16 16 C -0.07 -2.81 4.78 30.59 0.15 -2.66 16 17 C 0.01 0.25 3.93 29.85 0.12 0.36 16 18 C -0.53 -31.05 9.66 25.60 0.25 -30.81 16 19 H 0.03 1.73 7.99 -2.91 -0.02 1.70 16 20 C 0.01 0.30 5.47 84.65 0.46 0.77 16 21 N -0.95 -60.80 13.96 21.45 0.30 -60.50 16 22 Si 0.95 45.16 27.47 68.60 1.88 47.05 16 23 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 24 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 25 H -0.24 -10.54 6.54 99.48 0.65 -9.89 16 26 H 0.05 1.46 6.92 -2.38 -0.02 1.44 16 27 H 0.04 0.98 7.98 -2.39 -0.02 0.96 16 28 H 0.04 1.45 5.49 -2.39 -0.01 1.44 16 29 H 0.08 0.96 6.76 -2.39 -0.02 0.94 16 30 H 0.05 0.93 8.13 -2.39 -0.02 0.91 16 31 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.03 0.94 7.24 -2.39 -0.02 0.93 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.46 6.36 -2.39 -0.02 1.44 16 35 H 0.09 1.08 5.52 -2.38 -0.01 1.07 16 36 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 1.51 7.02 -2.39 -0.02 1.49 16 40 H 0.07 1.42 8.01 -2.39 -0.02 1.40 16 41 H 0.35 9.16 9.06 -89.69 -0.81 8.35 16 42 H 0.34 11.30 8.58 -89.70 -0.77 10.53 16 43 H 0.06 2.32 7.90 -2.39 -0.02 2.30 16 44 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.02 1.00 7.20 -2.39 -0.02 0.99 16 46 H 0.03 1.23 7.18 -2.39 -0.02 1.21 16 47 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -70.92 350.87 2.67 -68.25 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: -0.68 Total: 28.44 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: 4.30 Total: -20.71 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -2.79 Total: -103.67 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.04 Total: -19.36 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.05 kcal Total: -70.92 2.67 -68.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424115706.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.953 kcal (2) G-P(sol) polarization free energy of solvation -70.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds