Wall clock time and date at job start Tue Mar 31 2020 05:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47302 * 2 1 4 4 C 1.52995 * 109.47447 * 239.99490 * 2 1 3 5 5 C 1.53007 * 109.46692 * 119.99568 * 2 1 3 6 6 H 1.09001 * 109.99757 * 173.18526 * 5 2 1 7 7 C 1.54326 * 109.88362 * 294.28313 * 5 2 1 8 8 C 1.55155 * 102.94404 * 141.61094 * 7 5 2 9 9 C 1.55135 * 101.48332 * 324.33498 * 8 7 5 10 10 N 1.47018 * 109.88247 * 52.09325 * 5 2 1 11 11 C 1.34779 * 125.65115 * 61.60279 * 10 5 2 12 12 O 1.21283 * 119.99512 * 358.55799 * 11 10 5 13 13 C 1.50695 * 119.99997 * 178.55466 * 11 10 5 14 14 H 1.09000 * 109.47439 * 320.00276 * 13 11 10 15 15 N 1.46900 * 109.47275 * 200.00005 * 13 11 10 16 16 C 1.53003 * 109.47071 * 80.00170 * 13 11 10 17 17 C 1.53005 * 109.46856 * 185.00030 * 16 13 11 18 18 C 1.50704 * 109.46815 * 180.02562 * 17 16 13 19 19 H 1.08003 * 119.99841 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99880 * 179.72564 * 18 17 16 21 21 N 1.31511 * 119.99985 * 0.26907 * 20 18 17 22 22 Si 1.86803 * 119.99790 * 180.27413 * 20 18 17 23 23 H 1.48500 * 109.47403 * 59.99921 * 22 20 18 24 24 H 1.48504 * 109.46792 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47274 * 299.99685 * 22 20 18 26 26 H 1.08992 * 109.47453 * 300.00486 * 1 2 3 27 27 H 1.09007 * 109.46903 * 60.00682 * 1 2 3 28 28 H 1.08996 * 109.47089 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47536 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.46985 * 299.99241 * 3 2 1 31 31 H 1.09004 * 109.47551 * 59.99097 * 3 2 1 32 32 H 1.08999 * 109.47515 * 325.89912 * 4 2 1 33 33 H 1.08995 * 109.47176 * 85.90755 * 4 2 1 34 34 H 1.09009 * 109.46854 * 205.90427 * 4 2 1 35 35 H 1.09004 * 110.71891 * 259.97732 * 7 5 2 36 36 H 1.09004 * 110.71843 * 23.24508 * 7 5 2 37 37 H 1.08997 * 111.00479 * 82.56812 * 8 7 5 38 38 H 1.08994 * 111.00227 * 206.38853 * 8 7 5 39 39 H 1.09006 * 110.49167 * 278.44966 * 9 8 7 40 40 H 1.09000 * 110.34146 * 156.06237 * 9 8 7 41 41 H 1.00897 * 110.99979 * 300.00657 * 15 13 11 42 42 H 1.00906 * 111.00004 * 63.95490 * 15 13 11 43 43 H 1.08997 * 109.47069 * 65.00127 * 16 13 11 44 44 H 1.08996 * 109.46920 * 304.99801 * 16 13 11 45 45 H 1.08997 * 109.47202 * 60.00179 * 17 16 13 46 46 H 1.09004 * 109.46915 * 299.99414 * 17 16 13 47 47 H 0.96998 * 119.99787 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0399 -0.7212 1.2494 6 1 3.1230 -0.8327 1.1995 7 6 1.6521 0.0776 2.5116 8 6 1.2855 -1.0355 3.5284 9 6 0.6217 -2.0908 2.6051 10 7 1.4057 -2.0431 1.3575 11 6 1.5176 -3.0438 0.4615 12 8 2.1668 -2.8820 -0.5501 13 6 0.8363 -4.3634 0.7167 14 1 0.9309 -4.6233 1.7711 15 7 1.4666 -5.4067 -0.1032 16 6 -0.6449 -4.2520 0.3499 17 6 -1.3623 -5.5504 0.7251 18 6 -2.8211 -5.4409 0.3631 19 1 -3.1989 -4.5356 -0.0888 20 6 -3.6724 -6.4982 0.6043 21 7 -3.2125 -7.6004 1.1550 22 14 -5.4792 -6.3653 0.1487 23 1 -5.6053 -6.1291 -1.3120 24 1 -6.1742 -7.6277 0.5073 25 1 -6.0942 -5.2338 0.8880 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9562 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.3589 -1.5334 -1.5034 33 1 2.0920 -0.0172 -2.0795 34 1 3.0328 -1.1273 -1.0543 35 1 2.4970 0.6651 2.8708 36 1 0.7923 0.7177 2.3138 37 1 2.1786 -1.4370 4.0070 38 1 0.5780 -0.6681 4.2716 39 1 -0.4179 -1.8273 2.4102 40 1 0.6849 -3.0814 3.0553 41 1 1.3922 -5.1887 -1.0855 42 1 2.4297 -5.5444 0.1646 43 1 -0.7418 -4.0801 -0.7221 44 1 -1.0922 -3.4197 0.8933 45 1 -1.2654 -5.7223 1.7970 46 1 -0.9150 -6.3827 0.1816 47 1 -3.8114 -8.3444 1.3243 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424115707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:17 Heat of formation + Delta-G solvation = -45.045958 kcal Electronic energy + Delta-G solvation = -24167.769539 eV Core-core repulsion = 20963.982084 eV Total energy + Delta-G solvation = -3203.787454 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.77812 -38.06517 -35.76056 -34.94113 -32.76549 -31.64672 -30.05921 -28.44537 -27.31820 -27.20611 -26.22317 -24.25501 -22.67391 -21.49328 -20.43411 -19.50292 -17.96598 -17.27479 -16.59676 -16.14795 -15.62214 -15.24976 -14.58320 -14.41689 -14.32912 -14.00793 -13.61389 -13.46048 -13.30154 -12.75162 -12.56935 -12.46144 -12.26188 -12.10029 -11.91280 -11.74616 -11.64193 -11.35233 -11.24452 -11.12299 -10.87618 -10.78400 -10.59540 -10.49701 -10.36232 -10.31763 -9.80942 -9.67702 -9.27587 -8.96822 -8.41497 -8.30316 -8.13766 -5.92497 -3.94602 2.85911 3.14443 3.36466 3.41145 3.43549 4.36706 4.43427 4.51056 4.64154 4.89371 4.92076 4.95204 5.02322 5.13984 5.24909 5.34219 5.42894 5.44513 5.53685 5.55610 5.61114 5.70700 5.73365 5.79979 5.81564 5.88258 5.92895 5.94451 6.03295 6.12592 6.18939 6.28777 6.42867 6.48685 6.52909 6.70478 6.77943 7.11788 7.45875 7.70090 7.77278 7.83593 7.97968 8.14901 8.41508 8.50091 9.13197 9.68436 11.18385 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020140 B = 0.004434 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.920040 B = 6313.859316 C = 6492.685787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.077 4.077 3 C -0.138 4.138 4 C -0.126 4.126 5 C 0.146 3.854 6 H 0.069 0.931 7 C -0.131 4.131 8 C -0.134 4.134 9 C 0.097 3.903 10 N -0.608 5.608 11 C 0.490 3.510 12 O -0.538 6.538 13 C 0.081 3.919 14 H 0.094 0.906 15 N -0.807 5.807 16 C -0.093 4.093 17 C 0.033 3.967 18 C -0.522 4.522 19 H 0.051 0.949 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.888 3.112 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.278 1.278 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.028 0.972 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.347 0.653 42 H 0.333 0.667 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.012 0.988 46 H 0.034 0.966 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.585 16.725 3.707 20.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.078 4.078 3 C -0.196 4.196 4 C -0.183 4.183 5 C 0.042 3.958 6 H 0.087 0.913 7 C -0.169 4.169 8 C -0.172 4.172 9 C -0.026 4.026 10 N -0.342 5.342 11 C 0.278 3.722 12 O -0.416 6.416 13 C -0.035 4.035 14 H 0.112 0.888 15 N -0.335 5.335 16 C -0.131 4.131 17 C -0.005 4.005 18 C -0.560 4.560 19 H 0.069 0.931 20 C -0.142 4.142 21 N -0.532 5.532 22 Si 0.716 3.284 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.204 1.204 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.161 0.839 42 H 0.144 0.856 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.030 0.970 46 H 0.052 0.948 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.332 16.025 3.470 19.931 hybrid contribution -0.424 0.863 -0.476 1.073 sum 10.908 16.888 2.994 20.326 Atomic orbital electron populations 1.21888 0.94332 1.02322 1.00992 1.20921 0.96130 0.95052 0.95701 1.21897 1.00774 0.95299 1.01645 1.22251 1.02894 0.98549 0.94626 1.21679 0.96830 0.82836 0.94457 0.91315 1.22793 1.02245 0.97604 0.94215 1.22824 1.01188 0.95837 0.97318 1.22449 0.95693 1.00343 0.84088 1.48629 1.49801 1.13213 1.22587 1.22331 0.81319 0.86541 0.81968 1.90722 1.42664 1.81523 1.26693 1.21799 0.97082 0.85038 0.99532 0.88822 1.59028 1.21270 1.44345 1.08858 1.21618 0.89087 1.01992 1.00413 1.18999 0.93602 0.91227 0.96623 1.21236 0.94125 1.00148 1.40510 0.93123 1.24976 0.98416 0.95435 0.95389 1.69962 1.35235 1.04544 1.43462 0.86733 0.85571 0.77178 0.78927 1.20341 1.21327 1.20381 0.92934 0.93037 0.92178 0.92882 0.92637 0.92620 0.90816 0.95280 0.91915 0.90496 0.90029 0.90770 0.89855 0.90744 0.90099 0.83932 0.85573 0.93070 0.92976 0.97008 0.94758 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 7.91 37.16 0.29 -1.39 16 2 C -0.08 -0.90 0.58 -154.51 -0.09 -0.99 16 3 C -0.14 -1.29 8.01 37.15 0.30 -1.00 16 4 C -0.13 -1.78 6.97 37.16 0.26 -1.52 16 5 C 0.15 1.66 2.34 -66.95 -0.16 1.50 16 6 H 0.07 0.84 7.98 -51.93 -0.41 0.42 16 7 C -0.13 -1.11 5.14 -24.90 -0.13 -1.24 16 8 C -0.13 -1.12 7.10 -24.46 -0.17 -1.30 16 9 C 0.10 1.10 6.17 -2.41 -0.01 1.08 16 10 N -0.61 -7.93 2.06 -162.87 -0.34 -8.26 16 11 C 0.49 7.70 6.36 -10.99 -0.07 7.63 16 12 O -0.54 -9.33 11.02 5.55 0.06 -9.27 16 13 C 0.08 1.38 2.55 -68.87 -0.18 1.20 16 14 H 0.09 1.55 6.94 -51.93 -0.36 1.19 16 15 N -0.81 -13.80 8.44 -5.65 -0.05 -13.84 16 16 C -0.09 -1.88 4.76 -26.73 -0.13 -2.01 16 17 C 0.03 0.83 4.86 -27.88 -0.14 0.70 16 18 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 19 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 22 Si 0.89 21.76 29.54 -169.99 -5.02 16.73 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H 0.05 0.56 6.41 -51.93 -0.33 0.23 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.88 7.18 -51.93 -0.37 0.50 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.51 8.12 -51.93 -0.42 0.09 16 31 H 0.05 0.45 6.69 -51.93 -0.35 0.10 16 32 H 0.07 1.24 5.70 -51.93 -0.30 0.94 16 33 H 0.03 0.38 7.88 -51.93 -0.41 -0.03 16 34 H 0.06 0.96 6.55 -51.92 -0.34 0.62 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.67 5.51 -51.93 -0.29 0.39 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.88 7.85 -51.93 -0.41 0.47 16 40 H 0.08 0.93 6.91 -51.93 -0.36 0.57 16 41 H 0.35 5.99 8.58 -39.29 -0.34 5.66 16 42 H 0.33 4.97 9.06 -39.29 -0.36 4.62 16 43 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.05 1.01 7.31 -51.93 -0.38 0.63 16 45 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.03 0.96 7.75 -51.93 -0.40 0.55 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 352.43 15.07 5.31 5.31 Total: -1.00 -30.93 352.43 -8.25 -39.18 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -8.32 Total: 7.12 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -0.63 Total: -10.78 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.35 Total: -48.30 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.06 Total: -9.27 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.93 -8.25 -39.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424115707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.862 kcal (2) G-P(sol) polarization free energy of solvation -30.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds