Wall clock time and date at job start Tue Mar 31 2020 06:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46852 * 2 1 4 4 C 1.53003 * 109.47004 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.52382 * 55.08025 * 4 3 2 6 6 C 1.53045 * 109.49562 * 294.99925 * 4 3 2 7 7 C 1.53039 * 109.53694 * 178.68194 * 6 4 3 8 8 C 1.53196 * 109.33748 * 61.35198 * 7 6 4 9 9 N 1.46931 * 108.77131 * 305.41286 * 8 7 6 10 10 C 1.34773 * 120.60493 * 233.53550 * 9 8 7 11 11 O 1.21287 * 120.00452 * 180.02562 * 10 9 8 12 12 C 1.50706 * 120.00032 * 0.02562 * 10 9 8 13 13 H 1.08996 * 109.46978 * 319.99999 * 12 10 9 14 14 N 1.46895 * 109.47086 * 199.99929 * 12 10 9 15 15 C 1.53004 * 109.46766 * 80.00269 * 12 10 9 16 16 C 1.53006 * 109.46670 * 185.00217 * 15 12 10 17 17 C 1.50702 * 109.47049 * 179.97438 * 16 15 12 18 18 H 1.08001 * 119.99945 * 0.02562 * 17 16 15 19 19 C 1.37871 * 119.99780 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00438 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99619 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47137 * 90.00476 * 21 19 17 23 23 H 1.48505 * 109.47183 * 210.00120 * 21 19 17 24 24 H 1.48501 * 109.47104 * 329.99989 * 21 19 17 25 25 C 1.46928 * 118.76737 * 53.55408 * 9 8 7 26 26 H 1.08996 * 109.47003 * 299.99664 * 1 2 3 27 27 H 1.08998 * 109.47261 * 59.99704 * 1 2 3 28 28 H 1.09005 * 109.46920 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47003 * 240.00336 * 2 1 3 30 30 H 1.08998 * 109.47261 * 120.00296 * 2 1 3 31 31 H 1.09005 * 109.47161 * 60.00178 * 3 2 1 32 32 H 1.08998 * 109.47429 * 300.00193 * 3 2 1 33 33 H 1.09001 * 109.45732 * 58.66499 * 6 4 3 34 34 H 1.08995 * 109.46248 * 298.70209 * 6 4 3 35 35 H 1.09002 * 109.49756 * 181.31922 * 7 6 4 36 36 H 1.09000 * 109.49883 * 301.38665 * 7 6 4 37 37 H 1.08996 * 109.58760 * 65.17188 * 8 7 6 38 38 H 1.09001 * 109.58519 * 185.59185 * 8 7 6 39 39 H 1.00898 * 111.00464 * 300.00075 * 14 12 10 40 40 H 1.00898 * 111.00133 * 63.95387 * 14 12 10 41 41 H 1.08997 * 109.47276 * 304.99761 * 15 12 10 42 42 H 1.08996 * 109.47191 * 64.99961 * 15 12 10 43 43 H 1.08997 * 109.46899 * 299.99775 * 16 15 12 44 44 H 1.09001 * 109.47205 * 59.99610 * 16 15 12 45 45 H 0.97002 * 119.99988 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.58597 * 186.62384 * 25 9 8 47 47 H 1.09004 * 109.58075 * 66.20134 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9339 0.8546 -0.8432 6 6 4.0813 0.8326 1.3066 7 6 5.6114 0.8021 1.2930 8 6 6.1464 2.2336 1.1855 9 7 5.5446 2.8762 0.0092 10 6 6.3207 3.4504 -0.9312 11 8 5.8123 3.9782 -1.8976 12 6 7.8202 3.4366 -0.7820 13 1 8.0832 3.6149 0.2606 14 7 8.4056 4.4902 -1.6218 15 6 8.3637 2.0749 -1.2195 16 6 9.8690 2.0166 -0.9514 17 6 10.4043 0.6752 -1.3817 18 1 9.7377 -0.0619 -1.8045 19 6 11.7452 0.3893 -1.2366 20 7 12.5571 1.2870 -0.7222 21 14 12.4088 -1.2732 -1.7706 22 1 12.8320 -1.2038 -3.1923 23 1 13.5741 -1.6361 -0.9245 24 1 11.3480 -2.3014 -1.6194 25 6 4.0812 2.8815 -0.1224 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 3.6988 -0.1830 1.4075 34 1 3.7376 1.4352 2.1473 35 1 5.9743 0.3462 2.2142 36 1 5.9561 0.2198 0.4385 37 1 5.8796 2.7917 2.0829 38 1 7.2306 2.2111 1.0757 39 1 8.1759 4.3472 -2.5938 40 1 8.1123 5.4044 -1.3117 41 1 7.8638 1.2864 -0.6570 42 1 8.1786 1.9349 -2.2844 43 1 10.3690 2.8051 -1.5138 44 1 10.0541 2.1567 0.1136 45 1 13.5005 1.0857 -0.6198 46 1 3.8033 3.2869 -1.0953 47 1 3.6455 3.4923 0.6683 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424125833.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:01 Heat of formation + Delta-G solvation = -74.720910 kcal Electronic energy + Delta-G solvation = -23141.940726 eV Core-core repulsion = 19936.866469 eV Total energy + Delta-G solvation = -3205.074257 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.35141 -38.09778 -35.44749 -35.19288 -32.80486 -32.42471 -31.36623 -30.08456 -27.24390 -26.15534 -25.36570 -23.34550 -22.47181 -21.61416 -20.36838 -20.18041 -18.66491 -17.26371 -16.35102 -15.86885 -15.51718 -15.41142 -15.02852 -14.70667 -14.39536 -14.08418 -14.07507 -13.89842 -13.42734 -13.04993 -12.92342 -12.81588 -12.28338 -12.19269 -11.98567 -11.72715 -11.55402 -11.35408 -11.24207 -10.94299 -10.89934 -10.84700 -10.65631 -10.63921 -10.50576 -10.39255 -9.99916 -9.78021 -9.35287 -8.99775 -8.57350 -8.33368 -8.17863 -5.93656 -3.95798 2.78509 3.10501 3.34888 3.41209 3.43873 4.45562 4.49212 4.50942 4.66251 4.76262 4.85743 4.94385 4.97374 5.03648 5.13082 5.22003 5.35020 5.39315 5.41750 5.43537 5.53888 5.56056 5.60626 5.62531 5.70842 5.78585 5.83011 5.84089 5.86142 5.95542 5.97722 6.08840 6.15154 6.29074 6.44781 6.57305 6.68241 7.09051 7.38751 7.56266 7.76082 7.81998 7.96281 8.13563 8.32242 8.48723 9.12165 9.67400 11.17220 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017769 B = 0.003900 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.415062 B = 7177.494994 C = 8129.372879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.112 4.112 4 C -0.103 4.103 5 H 0.075 0.925 6 C -0.114 4.114 7 C -0.137 4.137 8 C 0.101 3.899 9 N -0.610 5.610 10 C 0.485 3.515 11 O -0.557 6.557 12 C 0.077 3.923 13 H 0.098 0.902 14 N -0.807 5.807 15 C -0.096 4.096 16 C 0.032 3.968 17 C -0.522 4.522 18 H 0.052 0.948 19 C 0.058 3.942 20 N -0.892 5.892 21 Si 0.888 3.112 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.114 3.886 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.347 0.653 40 H 0.333 0.667 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.035 0.965 44 H 0.012 0.988 45 H 0.259 0.741 46 H 0.088 0.912 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.007 0.760 6.147 21.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.150 4.150 4 C -0.122 4.122 5 H 0.093 0.907 6 C -0.151 4.151 7 C -0.175 4.175 8 C -0.022 4.022 9 N -0.344 5.344 10 C 0.273 3.727 11 O -0.435 6.435 12 C -0.038 4.038 13 H 0.115 0.885 14 N -0.335 5.335 15 C -0.134 4.134 16 C -0.005 4.005 17 C -0.560 4.560 18 H 0.070 0.930 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.716 3.284 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.009 4.009 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.117 0.883 39 H 0.161 0.839 40 H 0.145 0.855 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.031 0.969 45 H 0.069 0.931 46 H 0.106 0.894 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.351 0.816 5.930 21.213 hybrid contribution -0.631 -0.761 -0.428 1.077 sum -20.982 0.055 5.501 21.691 Atomic orbital electron populations 1.21779 0.96040 1.01487 1.01686 1.21567 0.95593 0.96875 1.02274 1.21580 0.94278 0.97039 1.02093 1.21555 0.95152 0.96555 0.98944 0.90673 1.21621 0.95461 1.01081 0.96965 1.21930 0.95661 0.96661 1.03267 1.21883 0.99770 0.93063 0.87441 1.48231 1.06287 1.56753 1.23120 1.22742 0.91965 0.76549 0.81467 1.90623 1.75939 1.46094 1.30877 1.21862 0.85522 0.96721 0.99744 0.88470 1.59019 1.63202 1.03933 1.07344 1.21691 1.01129 0.90281 1.00310 1.19010 0.87361 0.97105 0.97018 1.21270 0.93365 1.00224 1.41139 0.93021 1.24984 0.97143 0.96728 0.95429 1.69975 1.04174 1.33996 1.45033 0.86665 0.78545 0.84595 0.78581 1.20730 1.21289 1.20006 1.21580 0.80265 0.96168 1.02840 0.92855 0.92836 0.92880 0.92005 0.91702 0.91890 0.91857 0.91477 0.91993 0.90425 0.90906 0.91610 0.88278 0.83879 0.85515 0.92695 0.92928 0.94696 0.96923 0.93104 0.89408 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.13 -0.97 5.69 -26.73 -0.15 -1.12 16 3 C -0.11 -0.92 4.69 -26.73 -0.13 -1.04 16 4 C -0.10 -1.03 2.34 -90.50 -0.21 -1.24 16 5 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 6 C -0.11 -1.04 4.95 -26.69 -0.13 -1.17 16 7 C -0.14 -1.46 6.08 -26.61 -0.16 -1.62 16 8 C 0.10 1.19 5.76 -3.71 -0.02 1.17 16 9 N -0.61 -8.31 2.97 -172.76 -0.51 -8.82 16 10 C 0.49 8.06 6.94 -10.98 -0.08 7.98 16 11 O -0.56 -10.68 15.66 5.55 0.09 -10.59 16 12 C 0.08 1.33 2.29 -68.86 -0.16 1.18 16 13 H 0.10 1.59 6.80 -51.93 -0.35 1.24 16 14 N -0.81 -14.03 8.44 -5.65 -0.05 -14.08 16 15 C -0.10 -1.95 4.45 -26.73 -0.12 -2.07 16 16 C 0.03 0.82 4.86 -27.88 -0.14 0.68 16 17 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 18 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 21 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 C 0.11 1.35 5.72 -3.71 -0.02 1.33 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.48 6.54 -51.93 -0.34 0.14 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.56 6.51 -51.93 -0.34 0.23 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 1.30 4.83 -51.93 -0.25 1.05 16 39 H 0.35 6.14 8.58 -39.29 -0.34 5.80 16 40 H 0.33 5.05 9.06 -39.29 -0.36 4.70 16 41 H 0.05 1.06 6.97 -51.93 -0.36 0.69 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 44 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.09 1.19 7.01 -51.93 -0.36 0.83 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -31.65 363.55 -9.20 -40.85 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -8.56 Total: 6.62 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -1.36 Total: -10.02 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.18 Total: -49.00 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.65 -9.20 -40.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424125833.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.876 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds