Wall clock time and date at job start Tue Mar 31 2020 06:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47423 * 2 1 4 4 C 1.53002 * 109.47417 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.49861 * 54.93399 * 4 3 2 6 6 C 1.53045 * 109.52273 * 294.85439 * 4 3 2 7 7 C 1.53038 * 109.53516 * 178.66339 * 6 4 3 8 8 C 1.53194 * 109.31101 * 61.36880 * 7 6 4 9 9 N 1.46924 * 108.77334 * 305.36035 * 8 7 6 10 10 C 1.34787 * 120.63033 * 233.88527 * 9 8 7 11 11 O 1.21276 * 119.99928 * 179.72235 * 10 9 8 12 12 C 1.50703 * 119.99759 * 359.72119 * 10 9 8 13 13 H 1.08994 * 109.47128 * 40.00216 * 12 10 9 14 14 N 1.46901 * 109.46637 * 160.00286 * 12 10 9 15 15 C 1.52995 * 109.47117 * 279.99825 * 12 10 9 16 16 C 1.52997 * 109.47129 * 175.00349 * 15 12 10 17 17 C 1.50706 * 109.47248 * 180.02562 * 16 15 12 18 18 H 1.08005 * 119.99808 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00208 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00099 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00054 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46960 * 90.00709 * 21 19 17 23 23 H 1.48507 * 109.47015 * 210.00183 * 21 19 17 24 24 H 1.48499 * 109.47480 * 330.00529 * 21 19 17 25 25 C 1.46926 * 118.73991 * 53.61035 * 9 8 7 26 26 H 1.09004 * 109.47399 * 300.00003 * 1 2 3 27 27 H 1.08995 * 109.47394 * 59.99824 * 1 2 3 28 28 H 1.09003 * 109.47342 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47442 * 239.99520 * 2 1 3 30 30 H 1.09004 * 109.47173 * 120.00169 * 2 1 3 31 31 H 1.09001 * 109.47060 * 60.00134 * 3 2 1 32 32 H 1.09000 * 109.47339 * 299.99795 * 3 2 1 33 33 H 1.08994 * 109.45779 * 298.68656 * 6 4 3 34 34 H 1.08999 * 109.45805 * 58.65034 * 6 4 3 35 35 H 1.09005 * 109.49668 * 181.31620 * 7 6 4 36 36 H 1.08996 * 109.50270 * 301.38288 * 7 6 4 37 37 H 1.09004 * 109.58535 * 185.57376 * 8 7 6 38 38 H 1.08994 * 109.59149 * 65.14853 * 8 7 6 39 39 H 1.00898 * 110.99886 * 296.04085 * 14 12 10 40 40 H 1.00896 * 111.00396 * 59.99644 * 14 12 10 41 41 H 1.09005 * 109.47569 * 295.00427 * 15 12 10 42 42 H 1.09006 * 109.47450 * 55.00331 * 15 12 10 43 43 H 1.09007 * 109.46966 * 299.99669 * 16 15 12 44 44 H 1.08994 * 109.47231 * 60.00004 * 16 15 12 45 45 H 0.96997 * 120.00628 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.58178 * 66.18066 * 25 9 8 47 47 H 1.09004 * 109.58598 * 186.60071 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9342 0.8520 -0.8401 6 6 4.0809 0.8363 1.3098 7 6 5.6109 0.8056 1.2967 8 6 6.1454 2.2370 1.1856 9 7 5.5447 2.8759 0.0068 10 6 6.3214 3.4417 -0.9383 11 8 5.8136 3.9615 -1.9092 12 6 7.8209 3.4283 -0.7885 13 1 8.1379 2.4637 -0.3923 14 7 8.4459 3.6486 -2.0996 15 6 8.2473 4.5395 0.1728 16 6 9.7540 4.4478 0.4222 17 6 10.1739 5.5420 1.3696 18 1 9.4395 6.2334 1.7556 19 6 11.4955 5.6598 1.7445 20 7 12.3898 4.8176 1.2748 21 14 12.0160 7.0165 2.9182 22 1 11.9217 6.5247 4.3163 23 1 13.4172 7.4129 2.6265 24 1 11.1233 8.1905 2.7452 25 6 4.0814 2.8809 -0.1252 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7369 1.4414 2.1486 34 1 3.6982 -0.1790 1.4136 35 1 5.9736 0.3525 2.2194 36 1 5.9559 0.2207 0.4441 37 1 7.2298 2.2146 1.0764 38 1 5.8779 2.7976 2.0812 39 1 8.2318 2.8935 -2.7336 40 1 8.1674 4.5371 -2.4882 41 1 8.0098 5.5094 -0.2645 42 1 7.7152 4.4269 1.1175 43 1 9.9915 3.4780 0.8596 44 1 10.2862 4.5606 -0.5223 45 1 13.3196 4.9007 1.5382 46 1 3.6455 3.4941 0.6635 47 1 3.8038 3.2836 -1.0994 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424125834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:05 Heat of formation + Delta-G solvation = -74.425555 kcal Electronic energy + Delta-G solvation = -22951.505035 eV Core-core repulsion = 19746.443586 eV Total energy + Delta-G solvation = -3205.061449 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.35909 -38.14042 -35.45999 -35.20606 -32.80413 -32.47181 -31.41230 -30.08204 -27.26178 -26.18175 -25.36718 -23.37340 -22.52914 -21.66360 -20.54112 -19.95412 -18.79639 -17.25741 -16.33601 -15.84275 -15.63404 -15.48019 -14.93668 -14.63833 -14.44221 -14.23843 -14.14558 -13.82918 -13.54448 -13.00806 -12.91589 -12.87558 -12.30369 -12.25761 -11.98742 -11.73989 -11.59017 -11.40724 -11.28763 -11.00024 -10.91959 -10.88750 -10.72939 -10.63408 -10.48950 -10.45002 -10.00133 -9.77598 -9.35249 -8.99115 -8.57964 -8.33235 -8.18103 -5.93367 -3.95461 2.79771 3.08435 3.34656 3.41315 3.44892 4.40773 4.44077 4.50437 4.61135 4.73217 4.78717 4.89557 4.92301 5.02137 5.08122 5.18067 5.32624 5.35592 5.38166 5.42233 5.49902 5.53215 5.57884 5.58667 5.68475 5.76392 5.79151 5.80832 5.85869 5.88763 5.90079 6.01453 6.09048 6.21727 6.43945 6.55161 6.68543 7.09062 7.38538 7.55981 7.76336 7.81852 7.96627 8.13780 8.32119 8.49087 9.12474 9.67678 11.17531 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027816 B = 0.003258 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.357204 B = 8592.377064 C = 9010.976444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.101 4.101 5 H 0.072 0.928 6 C -0.115 4.115 7 C -0.136 4.136 8 C 0.101 3.899 9 N -0.610 5.610 10 C 0.485 3.515 11 O -0.557 6.557 12 C 0.077 3.923 13 H 0.098 0.902 14 N -0.807 5.807 15 C -0.096 4.096 16 C 0.032 3.968 17 C -0.521 4.521 18 H 0.052 0.948 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.888 3.112 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.113 3.887 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.333 0.667 40 H 0.347 0.653 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.012 0.988 44 H 0.035 0.965 45 H 0.259 0.741 46 H 0.063 0.937 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.480 -11.302 -0.673 23.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.151 4.151 4 C -0.120 4.120 5 H 0.091 0.909 6 C -0.153 4.153 7 C -0.174 4.174 8 C -0.022 4.022 9 N -0.344 5.344 10 C 0.273 3.727 11 O -0.435 6.435 12 C -0.038 4.038 13 H 0.116 0.884 14 N -0.335 5.335 15 C -0.134 4.134 16 C -0.005 4.005 17 C -0.560 4.560 18 H 0.070 0.930 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.717 3.283 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.010 4.010 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.145 0.855 40 H 0.161 0.839 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.031 0.969 44 H 0.053 0.947 45 H 0.069 0.931 46 H 0.081 0.919 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.829 -11.068 -0.803 22.723 hybrid contribution -0.707 0.681 0.416 1.067 sum -20.536 -10.387 -0.387 23.017 Atomic orbital electron populations 1.21779 0.95992 1.01483 1.01786 1.21559 0.95661 0.96874 1.02122 1.21590 0.94237 0.97015 1.02264 1.21540 0.95227 0.96592 0.98665 0.90948 1.21629 0.95341 1.01090 0.97199 1.21942 0.95949 0.96801 1.02745 1.21894 0.99547 0.92771 0.87950 1.48218 1.06270 1.57119 1.22743 1.22732 0.92019 0.76458 0.81496 1.90621 1.75959 1.45770 1.31182 1.21867 0.85340 1.02877 0.93750 0.88417 1.59023 1.62596 1.07857 1.04014 1.21674 1.01791 0.94812 0.95135 1.19011 0.87526 0.96498 0.97475 1.21275 0.93253 1.14264 1.27189 0.93013 1.24987 0.96810 0.96079 0.96451 1.69972 1.02032 1.36806 1.44386 0.86657 0.77849 0.82544 0.81293 1.20781 1.21263 1.19992 1.21593 0.80321 0.96031 1.03044 0.92781 0.92806 0.92892 0.92131 0.91739 0.91757 0.91800 0.91741 0.91545 0.90428 0.91550 0.88453 0.91024 0.85539 0.83866 0.92883 0.92784 0.96933 0.94674 0.93105 0.91862 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.15 0.37 -0.59 16 2 C -0.12 -0.86 5.69 -26.74 -0.15 -1.01 16 3 C -0.11 -0.87 4.69 -26.73 -0.13 -1.00 16 4 C -0.10 -0.93 2.34 -90.50 -0.21 -1.14 16 5 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 6 C -0.12 -0.96 4.96 -26.69 -0.13 -1.09 16 7 C -0.14 -1.26 6.08 -26.61 -0.16 -1.43 16 8 C 0.10 1.18 5.60 -3.71 -0.02 1.16 16 9 N -0.61 -8.29 2.97 -172.77 -0.51 -8.80 16 10 C 0.49 8.06 6.94 -10.98 -0.08 7.98 16 11 O -0.56 -10.68 15.66 5.56 0.09 -10.59 16 12 C 0.08 1.33 2.30 -68.86 -0.16 1.18 16 13 H 0.10 1.60 6.53 -51.93 -0.34 1.26 16 14 N -0.81 -14.03 8.44 -5.66 -0.05 -14.08 16 15 C -0.10 -1.96 4.55 -26.73 -0.12 -2.08 16 16 C 0.03 0.82 4.86 -27.88 -0.14 0.68 16 17 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 18 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 21 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.11 1.33 5.72 -3.71 -0.02 1.31 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.43 6.54 -51.93 -0.34 0.09 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.49 6.51 -51.93 -0.34 0.15 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.10 1.24 5.19 -51.93 -0.27 0.97 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.33 5.05 9.06 -39.29 -0.36 4.70 16 40 H 0.35 6.14 8.58 -39.29 -0.34 5.80 16 41 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.05 1.05 7.22 -51.93 -0.37 0.67 16 43 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.03 0.98 7.75 -51.93 -0.40 0.57 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.09 1.19 7.00 -51.93 -0.36 0.82 16 LS Contribution 363.84 15.07 5.48 5.48 Total: -1.00 -31.78 363.84 -9.22 -40.99 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -8.58 Total: 5.94 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -1.36 Total: -9.52 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.18 Total: -49.03 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.78 -9.22 -40.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424125834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.434 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds