Wall clock time and date at job start Tue Mar 31 2020 06:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47085 * 2 1 4 4 C 1.53004 * 109.47402 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.49610 * 305.05922 * 4 3 2 6 6 C 1.53041 * 109.52598 * 65.14094 * 4 3 2 7 7 C 1.53032 * 109.54014 * 181.33470 * 6 4 3 8 8 C 1.53631 * 109.24249 * 298.51549 * 7 6 4 9 9 N 1.46918 * 108.54362 * 54.85091 * 8 7 6 10 10 C 1.34779 * 120.62787 * 126.37213 * 9 8 7 11 11 O 1.21281 * 120.00101 * 179.72459 * 10 9 8 12 12 C 1.50701 * 120.00151 * 359.71950 * 10 9 8 13 13 H 1.09002 * 109.46909 * 319.99995 * 12 10 9 14 14 N 1.46898 * 109.47378 * 200.00299 * 12 10 9 15 15 C 1.52997 * 109.47011 * 79.99887 * 12 10 9 16 16 C 1.53006 * 109.47127 * 184.99954 * 15 12 10 17 17 C 1.50698 * 109.47184 * 179.97438 * 16 15 12 18 18 H 1.08005 * 119.99819 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00046 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00192 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99979 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47261 * 60.00310 * 21 19 17 24 24 H 1.48500 * 109.47454 * 300.00304 * 21 19 17 25 25 C 1.46926 * 118.74422 * 306.09862 * 9 8 7 26 26 H 1.09000 * 109.47322 * 60.00743 * 1 2 3 27 27 H 1.09002 * 109.47151 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47492 * 300.00110 * 1 2 3 29 29 H 1.09004 * 109.47746 * 239.99558 * 2 1 3 30 30 H 1.09000 * 109.47322 * 119.99257 * 2 1 3 31 31 H 1.08999 * 109.47425 * 59.99631 * 3 2 1 32 32 H 1.09008 * 109.47111 * 299.99349 * 3 2 1 33 33 H 1.08997 * 109.45989 * 301.36156 * 6 4 3 34 34 H 1.09000 * 109.45430 * 61.31386 * 6 4 3 35 35 H 1.09000 * 109.49988 * 58.58531 * 7 6 4 36 36 H 1.09003 * 109.50088 * 178.65145 * 7 6 4 37 37 H 1.09005 * 109.73183 * 295.11592 * 8 7 6 38 38 H 1.08998 * 109.66380 * 174.54916 * 8 7 6 39 39 H 1.00897 * 111.00106 * 176.05067 * 14 12 10 40 40 H 1.00908 * 110.99685 * 299.99966 * 14 12 10 41 41 H 1.09001 * 109.46832 * 65.00276 * 15 12 10 42 42 H 1.09001 * 109.47502 * 304.99797 * 15 12 10 43 43 H 1.08998 * 109.46509 * 60.00429 * 16 15 12 44 44 H 1.08993 * 109.46955 * 299.99989 * 16 15 12 45 45 H 0.97001 * 119.99934 * 359.97438 * 20 19 17 46 46 H 1.08994 * 109.59070 * 173.65114 * 25 9 8 47 47 H 1.09000 * 109.58240 * 293.92882 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9334 0.8525 0.8420 6 6 4.0821 0.8360 -1.3078 7 6 5.6120 0.8054 -1.2935 8 6 6.1462 2.2418 -1.1851 9 7 5.5445 2.8761 -0.0043 10 6 6.3201 3.4475 0.9383 11 8 5.8112 3.9724 1.9060 12 6 7.8198 3.4342 0.7899 13 1 8.1376 2.4675 0.3993 14 7 8.4436 3.6619 2.1002 15 6 8.2464 4.5403 -0.1773 16 6 9.7535 4.4480 -0.4249 17 6 10.1736 5.5371 -1.3780 18 1 9.4392 6.2264 -1.7678 19 6 11.4956 5.6541 -1.7515 20 7 12.3899 4.8151 -1.2765 21 14 12.0164 7.0045 -2.9324 22 1 13.4792 6.9149 -3.1728 23 1 11.6912 8.3289 -2.3445 24 1 11.2930 6.8431 -4.2192 25 6 4.0811 2.8812 0.1265 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9563 -0.8901 33 1 3.6994 -0.1793 -1.4116 34 1 3.7387 1.4408 -2.1471 35 1 5.9563 0.2213 -0.4400 36 1 5.9755 0.3514 -2.2154 37 1 5.8758 2.8035 -2.0793 38 1 7.2306 2.2226 -1.0770 39 1 9.4484 3.5937 2.0390 40 1 8.1643 4.5525 2.4837 41 1 8.0080 5.5123 0.2545 42 1 7.7152 4.4220 -1.1217 43 1 9.9918 3.4760 -0.8567 44 1 10.2847 4.5663 0.5195 45 1 12.1195 4.1140 -0.6630 46 1 3.8026 3.2841 1.1002 47 1 3.6460 3.4961 -0.6613 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424125835.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:09 Heat of formation + Delta-G solvation = -78.898010 kcal Electronic energy + Delta-G solvation = -22992.911718 eV Core-core repulsion = 19787.656328 eV Total energy + Delta-G solvation = -3205.255390 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.30970 -38.08357 -35.67631 -35.36973 -33.12863 -32.44676 -31.39845 -29.75728 -27.31132 -26.15313 -25.16673 -23.42717 -22.53447 -21.74876 -20.82764 -20.08061 -18.77641 -17.56616 -16.65672 -15.88491 -15.58631 -15.20736 -14.79115 -14.61464 -14.32961 -14.02413 -13.93624 -13.78071 -13.65918 -13.34067 -12.93465 -12.88719 -12.71916 -12.34791 -12.19612 -11.77400 -11.60082 -11.47004 -11.31920 -11.25386 -10.98177 -10.88713 -10.85130 -10.65409 -10.43325 -10.27516 -10.13604 -10.08381 -9.32861 -8.72009 -8.56143 -8.41241 -8.24274 -6.43765 -4.14210 2.88128 3.05141 3.39760 3.41180 3.60089 4.41785 4.45620 4.48551 4.62643 4.71548 4.79171 4.88803 4.93182 5.07673 5.11650 5.19097 5.32109 5.33809 5.34409 5.38599 5.48926 5.53097 5.58580 5.59389 5.63540 5.71441 5.76274 5.80681 5.82034 5.88828 5.91301 6.02830 6.10658 6.16195 6.23625 6.37674 6.58272 6.70752 7.20729 7.32140 7.35665 7.57926 7.80448 8.10821 8.37088 8.40940 8.79858 9.57686 10.96549 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027874 B = 0.003268 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.266100 B = 8565.655195 C = 8982.247893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.101 4.101 5 H 0.074 0.926 6 C -0.115 4.115 7 C -0.136 4.136 8 C 0.103 3.897 9 N -0.614 5.614 10 C 0.528 3.472 11 O -0.540 6.540 12 C 0.072 3.928 13 H 0.096 0.904 14 N -0.830 5.830 15 C -0.131 4.131 16 C 0.012 3.988 17 C -0.604 4.604 18 H 0.048 0.952 19 C 0.016 3.984 20 N -0.910 5.910 21 Si 1.068 2.932 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.288 1.288 25 C 0.117 3.883 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.351 0.649 40 H 0.346 0.654 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.009 0.991 44 H 0.008 0.992 45 H 0.268 0.732 46 H 0.089 0.911 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.563 -10.135 -0.320 22.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.151 4.151 4 C -0.121 4.121 5 H 0.092 0.908 6 C -0.152 4.152 7 C -0.174 4.174 8 C -0.020 4.020 9 N -0.348 5.348 10 C 0.317 3.683 11 O -0.416 6.416 12 C -0.043 4.043 13 H 0.114 0.886 14 N -0.362 5.362 15 C -0.171 4.171 16 C -0.025 4.025 17 C -0.642 4.642 18 H 0.066 0.934 19 C -0.188 4.188 20 N -0.546 5.546 21 Si 0.896 3.104 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.214 1.214 25 C -0.006 4.006 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.166 0.834 40 H 0.160 0.840 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.027 0.973 44 H 0.027 0.973 45 H 0.079 0.921 46 H 0.108 0.892 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.910 -9.848 -0.331 21.323 hybrid contribution -0.901 0.141 0.173 0.928 sum -19.810 -9.707 -0.158 22.061 Atomic orbital electron populations 1.21777 0.96003 1.01470 1.01780 1.21561 0.95646 0.96889 1.02133 1.21589 0.94214 0.97016 1.02274 1.21544 0.95214 0.96599 0.98701 0.90785 1.21622 0.95256 1.01100 0.97233 1.22012 0.96033 0.96681 1.02689 1.21948 0.99264 0.92906 0.87921 1.48046 1.06350 1.57670 1.22755 1.20812 0.89526 0.76731 0.81237 1.90616 1.75474 1.44933 1.30594 1.21531 0.89961 1.01197 0.91578 0.88608 1.58753 1.13991 1.40792 1.22646 1.22263 1.00547 0.96551 0.97695 1.19219 0.89348 0.97339 0.96587 1.21992 0.96110 1.16111 1.29983 0.93381 1.25853 0.93019 1.00834 0.99084 1.70801 1.36390 1.16836 1.30561 0.83552 0.76266 0.74997 0.75573 1.20689 1.21430 1.21422 1.21566 0.79827 0.96062 1.03142 0.92800 0.92908 0.92788 0.91765 0.92090 0.91742 0.91775 0.91526 0.91775 0.91432 0.90572 0.91127 0.88875 0.83385 0.84050 0.92546 0.92276 0.97301 0.97339 0.92122 0.89225 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.15 0.37 -0.62 16 2 C -0.12 -0.89 5.69 -26.74 -0.15 -1.04 16 3 C -0.11 -0.90 4.69 -26.73 -0.13 -1.02 16 4 C -0.10 -0.97 2.34 -90.50 -0.21 -1.18 16 5 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 6 C -0.11 -0.99 4.96 -26.69 -0.13 -1.12 16 7 C -0.14 -1.31 6.10 -26.39 -0.16 -1.47 16 8 C 0.10 1.24 5.61 -3.49 -0.02 1.22 16 9 N -0.61 -8.66 2.97 -172.51 -0.51 -9.17 16 10 C 0.53 9.24 6.95 -10.98 -0.08 9.17 16 11 O -0.54 -10.98 15.66 5.56 0.09 -10.89 16 12 C 0.07 1.27 2.35 -68.87 -0.16 1.11 16 13 H 0.10 1.59 6.55 -51.93 -0.34 1.25 16 14 N -0.83 -14.70 8.94 -5.66 -0.05 -14.75 16 15 C -0.13 -2.63 4.54 -26.73 -0.12 -2.75 16 16 C 0.01 0.29 4.05 -27.88 -0.11 0.18 16 17 C -0.60 -16.78 9.11 -34.44 -0.31 -17.09 16 18 H 0.05 1.33 7.74 -52.48 -0.41 0.92 16 19 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 20 N -0.91 -27.22 13.65 55.43 0.76 -26.46 16 21 Si 1.07 24.94 29.90 -169.99 -5.08 19.86 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 25 C 0.12 1.41 5.71 -3.71 -0.02 1.39 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.44 6.55 -51.93 -0.34 0.10 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.07 0.51 6.51 -51.93 -0.34 0.17 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 1.22 5.17 -51.93 -0.27 0.95 16 39 H 0.35 6.11 7.55 -39.29 -0.30 5.81 16 40 H 0.35 6.24 8.58 -39.29 -0.34 5.91 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.15 7.18 -51.93 -0.37 0.78 16 43 H 0.01 0.22 8.01 -51.93 -0.42 -0.20 16 44 H 0.01 0.21 6.73 -51.93 -0.35 -0.14 16 45 H 0.27 7.93 7.22 -40.82 -0.29 7.63 16 46 H 0.09 1.23 7.00 -51.93 -0.36 0.87 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 360.56 15.07 5.43 5.43 Total: -1.00 -31.56 360.56 -9.12 -40.69 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -8.42 Total: 8.17 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -1.34 Total: -12.87 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.19 Total: -50.38 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.08 Total: 19.86 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.56 -9.12 -40.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424125835.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.212 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds