Wall clock time and date at job start Tue Mar 31 2020 06:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47072 * 2 1 4 4 C 1.52998 * 109.47072 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.49412 * 305.05495 * 4 3 2 6 6 C 1.53035 * 109.50087 * 65.15999 * 4 3 2 7 7 C 1.53042 * 109.54021 * 181.31694 * 6 4 3 8 8 C 1.53191 * 109.31021 * 298.63480 * 7 6 4 9 9 N 1.46924 * 108.77817 * 54.63576 * 8 7 6 10 10 C 1.34775 * 120.63263 * 126.39226 * 9 8 7 11 11 O 1.21277 * 119.99906 * 179.97438 * 10 9 8 12 12 C 1.50696 * 119.99778 * 359.97438 * 10 9 8 13 13 H 1.09002 * 109.47205 * 40.00492 * 12 10 9 14 14 N 1.46902 * 109.46783 * 159.99977 * 12 10 9 15 15 C 1.52997 * 109.47645 * 280.00063 * 12 10 9 16 16 C 1.52994 * 109.47675 * 175.00138 * 15 12 10 17 17 C 1.50698 * 109.47595 * 180.02562 * 16 15 12 18 18 H 1.08001 * 119.99526 * 359.97438 * 17 16 15 19 19 C 1.37870 * 120.00102 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00492 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99888 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46935 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47363 * 119.99741 * 21 19 17 24 24 H 1.48504 * 109.46883 * 239.99380 * 21 19 17 25 25 C 1.46929 * 118.73409 * 306.38734 * 9 8 7 26 26 H 1.09001 * 109.47180 * 60.00484 * 1 2 3 27 27 H 1.09000 * 109.47247 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47755 * 300.00695 * 1 2 3 29 29 H 1.08993 * 109.47338 * 239.99436 * 2 1 3 30 30 H 1.08997 * 109.46729 * 119.99321 * 2 1 3 31 31 H 1.08998 * 109.47398 * 59.99087 * 3 2 1 32 32 H 1.09010 * 109.46601 * 299.99574 * 3 2 1 33 33 H 1.09004 * 109.45792 * 301.33922 * 6 4 3 34 34 H 1.08999 * 109.46561 * 61.29476 * 6 4 3 35 35 H 1.09006 * 109.49541 * 58.58370 * 7 6 4 36 36 H 1.08997 * 109.49624 * 178.64892 * 7 6 4 37 37 H 1.08999 * 109.58565 * 174.42221 * 8 7 6 38 38 H 1.09005 * 109.58474 * 294.70092 * 8 7 6 39 39 H 1.00903 * 110.99603 * 60.00378 * 14 12 10 40 40 H 1.00896 * 110.99825 * 183.95328 * 14 12 10 41 41 H 1.08999 * 109.47075 * 295.00453 * 15 12 10 42 42 H 1.09008 * 109.47070 * 55.00078 * 15 12 10 43 43 H 1.08999 * 109.47126 * 300.00283 * 16 15 12 44 44 H 1.09008 * 109.46920 * 59.99849 * 16 15 12 45 45 H 0.96996 * 120.00653 * 180.02562 * 20 19 17 46 46 H 1.08998 * 109.59209 * 293.82131 * 25 9 8 47 47 H 1.09003 * 109.58217 * 173.39412 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9333 0.8524 0.8420 6 6 4.0814 0.8363 -1.3081 7 6 5.6114 0.8057 -1.2946 8 6 6.1457 2.2371 -1.1835 9 7 5.5446 2.8762 -0.0050 10 6 6.3206 3.4471 0.9375 11 8 5.8122 3.9718 1.9054 12 6 7.8201 3.4333 0.7884 13 1 8.0834 3.6151 -0.2536 14 7 8.4056 4.4840 1.6318 15 6 8.3633 2.0701 1.2214 16 6 9.8685 2.0122 0.9535 17 6 10.4034 0.6693 1.3793 18 1 9.7364 -0.0690 1.7995 19 6 11.7442 0.3835 1.2335 20 7 12.5565 1.2827 0.7224 21 14 12.4071 -1.2815 1.7608 22 1 11.2974 -2.1078 2.3002 23 1 13.0115 -1.9669 0.5903 24 1 13.4394 -1.0931 2.8115 25 6 4.0812 2.8811 0.1264 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5137 0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.6766 1.9563 -0.8901 33 1 3.6987 -0.1791 -1.4119 34 1 3.7377 1.4411 -2.1473 35 1 5.9561 0.2214 -0.4414 36 1 5.9743 0.3519 -2.2168 37 1 7.2300 2.2149 -1.0739 38 1 5.8806 2.7968 -2.0805 39 1 8.1757 4.3378 2.6033 40 1 9.4046 4.5380 1.5008 41 1 8.1780 1.9265 2.2859 42 1 7.8632 1.2835 0.6562 43 1 10.0538 2.1558 -0.1110 44 1 10.3686 2.7988 1.5186 45 1 13.4998 1.0815 0.6194 46 1 3.6454 3.4941 -0.6626 47 1 3.8032 3.2838 1.1004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424125836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:13 Heat of formation + Delta-G solvation = -75.586646 kcal Electronic energy + Delta-G solvation = -23148.657705 eV Core-core repulsion = 19943.545907 eV Total energy + Delta-G solvation = -3205.111798 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.24880 -37.99536 -35.53653 -35.29144 -32.86852 -32.36611 -31.33919 -29.88553 -27.32626 -26.14439 -25.34123 -23.52219 -22.44580 -21.61058 -20.45973 -20.16757 -18.57519 -17.43171 -16.33156 -15.85362 -15.49166 -15.06239 -14.80801 -14.59810 -14.44847 -14.07721 -13.91365 -13.79447 -13.53765 -13.17513 -12.85092 -12.80056 -12.56243 -12.20120 -12.07912 -11.78793 -11.59398 -11.34660 -11.20185 -11.06461 -10.93846 -10.89140 -10.81281 -10.66874 -10.58211 -10.35686 -9.98691 -9.86063 -9.25513 -9.14453 -8.49925 -8.45101 -8.15789 -6.09411 -4.12457 2.95175 3.12420 3.25307 3.33507 3.37333 4.38522 4.49151 4.53470 4.69904 4.79858 4.88627 4.98439 5.00624 5.15976 5.20801 5.26150 5.27204 5.40122 5.42350 5.46638 5.58357 5.58894 5.63652 5.65420 5.75379 5.78300 5.82387 5.86670 5.88391 5.97986 6.00288 6.11364 6.18338 6.28192 6.34987 6.53000 6.65600 6.87401 7.43273 7.51402 7.60257 7.67563 7.87831 7.92763 8.30519 8.48312 8.93733 9.52613 11.01514 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017863 B = 0.003897 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.070342 B = 7183.371991 C = 8126.374643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.112 4.112 4 C -0.103 4.103 5 H 0.075 0.925 6 C -0.114 4.114 7 C -0.137 4.137 8 C 0.102 3.898 9 N -0.614 5.614 10 C 0.528 3.472 11 O -0.541 6.541 12 C 0.074 3.926 13 H 0.096 0.904 14 N -0.831 5.831 15 C -0.138 4.138 16 C 0.025 3.975 17 C -0.522 4.522 18 H 0.055 0.945 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.118 3.882 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.345 0.655 40 H 0.354 0.646 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.261 0.739 46 H 0.062 0.938 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.421 -0.452 -5.858 20.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.150 4.150 4 C -0.122 4.122 5 H 0.093 0.907 6 C -0.151 4.151 7 C -0.175 4.175 8 C -0.021 4.021 9 N -0.349 5.349 10 C 0.317 3.683 11 O -0.417 6.417 12 C -0.041 4.041 13 H 0.114 0.886 14 N -0.363 5.363 15 C -0.178 4.178 16 C -0.012 4.012 17 C -0.560 4.560 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.210 1.210 25 C -0.005 4.005 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.158 0.842 40 H 0.169 0.831 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -19.949 0.394 -5.795 20.777 hybrid contribution 1.046 -1.824 0.592 2.184 sum -18.903 -1.430 -5.203 19.658 Atomic orbital electron populations 1.21777 0.96060 1.01455 1.01701 1.21565 0.95576 0.96923 1.02237 1.21581 0.94291 0.96987 1.02144 1.21562 0.95138 0.96676 0.98866 0.90695 1.21617 0.95414 1.01049 0.97026 1.21931 0.95737 0.96724 1.03112 1.21840 0.99585 0.93019 0.87615 1.48056 1.06276 1.57613 1.22931 1.20886 0.89604 0.76324 0.81503 1.90610 1.75539 1.44811 1.30770 1.21507 0.89648 0.93357 0.99624 0.88606 1.58757 1.17781 1.47621 1.12137 1.22413 1.00850 0.93739 1.00779 1.19101 0.87633 0.97386 0.97114 1.21208 0.93411 0.99857 1.41563 0.92693 1.25006 0.97102 0.97010 0.95176 1.69955 1.04334 1.34045 1.44856 0.86543 0.78996 0.84170 0.78360 1.19761 1.20930 1.20958 1.21551 0.79930 0.96021 1.02994 0.92852 0.92918 0.92824 0.91734 0.92028 0.91802 0.91867 0.91549 0.91960 0.91020 0.90533 0.88574 0.91607 0.84178 0.83126 0.92754 0.92367 0.96368 0.96421 0.92935 0.91990 0.89280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.13 -0.98 5.69 -26.73 -0.15 -1.13 16 3 C -0.11 -0.93 4.69 -26.73 -0.13 -1.06 16 4 C -0.10 -1.05 2.34 -90.50 -0.21 -1.26 16 5 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 6 C -0.11 -1.05 4.96 -26.69 -0.13 -1.18 16 7 C -0.14 -1.47 6.08 -26.61 -0.16 -1.63 16 8 C 0.10 1.23 5.76 -3.71 -0.02 1.21 16 9 N -0.61 -8.68 2.97 -172.77 -0.51 -9.20 16 10 C 0.53 9.25 6.95 -10.99 -0.08 9.17 16 11 O -0.54 -11.02 15.66 5.56 0.09 -10.93 16 12 C 0.07 1.30 2.34 -68.87 -0.16 1.13 16 13 H 0.10 1.60 6.80 -51.93 -0.35 1.25 16 14 N -0.83 -14.82 8.94 -5.66 -0.05 -14.87 16 15 C -0.14 -2.73 4.45 -26.74 -0.12 -2.85 16 16 C 0.02 0.60 4.74 -27.89 -0.13 0.47 16 17 C -0.52 -14.23 9.11 -34.44 -0.31 -14.55 16 18 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 21 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.12 1.43 5.72 -3.71 -0.02 1.41 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.49 6.54 -51.93 -0.34 0.15 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 33 H 0.07 0.56 6.51 -51.93 -0.34 0.23 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 1.28 4.84 -51.93 -0.25 1.03 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.35 6.24 8.58 -39.29 -0.34 5.90 16 40 H 0.35 6.25 7.55 -39.29 -0.30 5.95 16 41 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.06 1.11 6.97 -51.92 -0.36 0.75 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.44 6.87 -51.92 -0.36 0.09 16 45 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.09 1.24 7.01 -51.93 -0.36 0.87 16 LS Contribution 361.61 15.07 5.45 5.45 Total: -1.00 -30.61 361.61 -9.13 -39.73 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -8.46 Total: 8.23 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -1.36 Total: -9.42 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.17 Total: -49.22 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.61 -9.13 -39.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424125836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.853 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds