Wall clock time and date at job start Tue Mar 31 2020 05:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.46911 * 2 1 4 4 C 1.53001 * 109.47061 * 120.00408 * 2 1 3 5 5 H 1.09005 * 109.69784 * 187.78668 * 4 2 1 6 6 C 1.53618 * 109.66253 * 308.37291 * 4 2 1 7 7 C 1.53045 * 109.24108 * 174.55315 * 6 4 2 8 8 C 1.53041 * 109.53770 * 298.51074 * 7 6 4 9 9 C 1.53197 * 109.30859 * 61.36488 * 8 7 6 10 10 N 1.46920 * 109.58883 * 67.43110 * 4 2 1 11 11 C 1.34771 * 120.63068 * 6.62183 * 10 4 2 12 12 O 1.21283 * 120.00515 * 355.64145 * 11 10 4 13 13 C 1.50707 * 120.00128 * 175.91200 * 11 10 4 14 14 H 1.08998 * 109.46797 * 39.72313 * 13 11 10 15 15 N 1.46894 * 109.47141 * 159.72603 * 13 11 10 16 16 C 1.52997 * 109.46869 * 279.72981 * 13 11 10 17 17 C 1.53002 * 109.47264 * 174.99979 * 16 13 11 18 18 C 1.50698 * 109.47525 * 179.97438 * 17 16 13 19 19 H 1.08000 * 119.99692 * 359.97438 * 18 17 16 20 20 C 1.37880 * 120.00104 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99888 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99920 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47161 * 89.99485 * 22 20 18 24 24 H 1.48491 * 109.47064 * 209.99862 * 22 20 18 25 25 H 1.48504 * 109.46958 * 329.99591 * 22 20 18 26 26 H 1.09001 * 109.46653 * 192.86502 * 1 2 3 27 27 H 1.08998 * 109.47001 * 312.86313 * 1 2 3 28 28 H 1.08996 * 109.46960 * 72.86740 * 1 2 3 29 29 H 1.09008 * 109.47084 * 240.00123 * 2 1 3 30 30 H 1.09002 * 109.47198 * 174.38476 * 3 2 1 31 31 H 1.08994 * 109.47495 * 294.38483 * 3 2 1 32 32 H 1.08999 * 109.47589 * 54.39051 * 3 2 1 33 33 H 1.08996 * 109.63670 * 54.56540 * 6 4 2 34 34 H 1.09003 * 109.46243 * 294.43778 * 6 4 2 35 35 H 1.08999 * 109.45807 * 178.49439 * 7 6 4 36 36 H 1.08996 * 109.44875 * 58.52728 * 7 6 4 37 37 H 1.08999 * 109.49813 * 301.41653 * 8 7 6 38 38 H 1.08996 * 109.50053 * 181.31445 * 8 7 6 39 39 H 1.09002 * 109.58375 * 185.57507 * 9 8 7 40 40 H 1.08994 * 109.70482 * 65.22670 * 9 8 7 41 41 H 1.00901 * 111.00353 * 296.04735 * 15 13 11 42 42 H 1.00900 * 110.99881 * 60.00183 * 15 13 11 43 43 H 1.09009 * 109.46929 * 294.99502 * 16 13 11 44 44 H 1.08996 * 109.48036 * 54.99697 * 16 13 11 45 45 H 1.09002 * 109.46928 * 299.99953 * 17 16 13 46 46 H 1.09007 * 109.47199 * 59.99204 * 17 16 13 47 47 H 0.96998 * 119.99693 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1212 -0.6047 1.3252 6 6 1.3657 -0.1326 2.4976 7 6 1.7776 -0.9481 3.7254 8 6 1.3062 -2.3947 3.5607 9 6 1.9748 -3.0080 2.3262 10 7 1.7034 -2.1490 1.1655 11 6 1.1609 -2.6620 0.0435 12 8 0.8731 -1.9307 -0.8802 13 6 0.9063 -4.1437 -0.0611 14 1 0.5345 -4.5167 0.8932 15 7 -0.0924 -4.3962 -1.1083 16 6 2.2101 -4.8613 -0.4160 17 6 1.9805 -6.3739 -0.3999 18 6 3.2645 -7.0808 -0.7501 19 1 4.1552 -6.5084 -0.9632 20 6 3.3021 -8.4583 -0.7984 21 7 4.4228 -9.0751 -1.1034 22 14 1.7613 -9.4482 -0.4305 23 1 1.0048 -9.6724 -1.6885 24 1 2.1427 -10.7572 0.1578 25 1 0.9114 -8.7018 0.5318 26 1 -0.3633 -1.0019 0.2288 27 1 -0.3633 0.6991 0.7532 28 1 -0.3633 0.3027 -0.9820 29 1 1.8934 -0.5139 -0.8901 30 1 3.1253 1.4442 0.1006 31 1 1.7611 1.9265 -0.9359 32 1 1.5970 1.9845 0.8355 33 1 0.2826 -0.1717 2.3817 34 1 1.6806 0.9030 2.6262 35 1 1.3223 -0.5171 4.6170 36 1 2.8628 -0.9290 3.8263 37 1 0.2237 -2.4125 3.4346 38 1 1.5794 -2.9694 4.4456 39 1 1.5684 -4.0034 2.1472 40 1 3.0507 -3.0761 2.4867 41 1 -0.9820 -3.9864 -0.8660 42 1 0.2292 -4.0592 -2.0034 43 1 2.5353 -4.5538 -1.4099 44 1 2.9776 -4.6027 0.3135 45 1 1.6553 -6.6815 0.5939 46 1 1.2130 -6.6327 -1.1295 47 1 4.4492 -10.0441 -1.1378 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424131721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:51 Heat of formation + Delta-G solvation = -31.664482 kcal Electronic energy + Delta-G solvation = -24097.352811 eV Core-core repulsion = 20894.145621 eV Total energy + Delta-G solvation = -3203.207190 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.02439 -37.73838 -36.10513 -34.57324 -32.90625 -32.71488 -30.47763 -29.90340 -27.22985 -26.97110 -25.30042 -24.08912 -23.04611 -21.03917 -20.37153 -19.89495 -18.68019 -16.90554 -16.68363 -16.08010 -15.73881 -15.21451 -15.05235 -14.67295 -14.42104 -14.17826 -13.90810 -13.78813 -13.22695 -13.06593 -12.84701 -12.64370 -12.50522 -12.29282 -12.03700 -11.83749 -11.74858 -11.31510 -11.10919 -10.99815 -10.88987 -10.82538 -10.71319 -10.48633 -10.42488 -10.02390 -9.83137 -9.67033 -9.24578 -9.07269 -8.50967 -8.46873 -8.18096 -5.98885 -3.96322 2.73473 3.03024 3.37735 3.44231 3.49435 4.45098 4.51696 4.60611 4.63414 4.80048 4.86547 4.93982 5.04025 5.10935 5.18888 5.21431 5.33445 5.37510 5.43416 5.54426 5.58519 5.64867 5.69252 5.74624 5.75646 5.81126 5.84763 5.88603 5.93360 6.00671 6.14716 6.21143 6.30711 6.39538 6.49297 6.50905 6.78574 6.89163 7.29291 7.39442 7.49925 7.58696 7.69159 7.87338 8.31670 8.58957 9.06041 9.64295 11.14688 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023311 B = 0.004398 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.869595 B = 6365.190121 C = 6772.606527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.096 4.096 3 C -0.152 4.152 4 C 0.149 3.851 5 H 0.068 0.932 6 C -0.133 4.133 7 C -0.120 4.120 8 C -0.135 4.135 9 C 0.101 3.899 10 N -0.604 5.604 11 C 0.480 3.520 12 O -0.534 6.534 13 C 0.071 3.929 14 H 0.095 0.905 15 N -0.812 5.812 16 C -0.086 4.086 17 C -0.003 4.003 18 C -0.520 4.520 19 H 0.068 0.932 20 C 0.066 3.934 21 N -0.907 5.907 22 Si 0.882 3.118 23 H -0.277 1.277 24 H -0.291 1.291 25 H -0.265 1.265 26 H 0.058 0.942 27 H 0.030 0.970 28 H 0.046 0.954 29 H 0.110 0.890 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.334 0.666 42 H 0.349 0.651 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.011 0.989 46 H 0.029 0.971 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.839 19.130 9.413 22.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.114 4.114 3 C -0.210 4.210 4 C 0.046 3.954 5 H 0.086 0.914 6 C -0.171 4.171 7 C -0.158 4.158 8 C -0.173 4.173 9 C -0.021 4.021 10 N -0.337 5.337 11 C 0.268 3.732 12 O -0.413 6.413 13 C -0.044 4.044 14 H 0.113 0.887 15 N -0.340 5.340 16 C -0.125 4.125 17 C -0.041 4.041 18 C -0.558 4.558 19 H 0.086 0.914 20 C -0.135 4.135 21 N -0.546 5.546 22 Si 0.710 3.290 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.189 1.189 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.128 0.872 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.145 0.855 42 H 0.163 0.837 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.030 0.970 46 H 0.047 0.953 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.809 18.541 9.052 22.061 hybrid contribution -0.612 0.459 0.254 0.807 sum -8.421 19.000 9.306 22.771 Atomic orbital electron populations 1.21845 0.94883 1.00611 0.99954 1.21752 0.96863 0.94291 0.98518 1.21994 1.00553 0.97066 1.01390 1.21456 0.98341 0.80045 0.95579 0.91410 1.22143 1.01494 0.99179 0.94301 1.21530 1.01200 0.95278 0.97793 1.21919 1.00893 0.96483 0.97985 1.21876 1.00953 0.94516 0.84795 1.48181 1.62316 1.08741 1.14503 1.22390 0.76342 0.92656 0.81786 1.90676 1.51457 1.59786 1.39385 1.21919 0.96723 0.88489 0.97292 0.88690 1.59047 1.04560 1.65197 1.05157 1.21450 0.91681 0.98226 1.01102 1.19476 0.97671 0.90108 0.96831 1.21180 0.96078 0.91651 1.46929 0.91350 1.25011 0.95919 0.97890 0.94653 1.69924 1.26245 1.08882 1.49553 0.86741 0.83897 0.79200 0.79192 1.20289 1.21726 1.18917 0.92329 0.95130 0.93512 0.87207 0.93105 0.92729 0.93231 0.91141 0.91144 0.91910 0.91808 0.91634 0.90551 0.88733 0.90926 0.85483 0.83687 0.92325 0.92263 0.97047 0.95294 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 6.74 37.16 0.25 -1.18 16 2 C -0.10 -1.16 2.16 -90.62 -0.20 -1.36 16 3 C -0.15 -1.51 8.87 37.15 0.33 -1.18 16 4 C 0.15 1.68 2.65 -67.38 -0.18 1.50 16 5 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 6 C -0.13 -1.23 4.69 -26.39 -0.12 -1.35 16 7 C -0.12 -0.99 5.88 -26.69 -0.16 -1.15 16 8 C -0.13 -1.19 6.08 -26.61 -0.16 -1.35 16 9 C 0.10 1.11 5.71 -3.71 -0.02 1.09 16 10 N -0.60 -7.52 2.88 -164.97 -0.48 -8.00 16 11 C 0.48 7.02 5.80 -10.98 -0.06 6.96 16 12 O -0.53 -8.51 9.77 5.55 0.05 -8.45 16 13 C 0.07 1.11 2.31 -68.87 -0.16 0.95 16 14 H 0.10 1.40 6.35 -51.93 -0.33 1.07 16 15 N -0.81 -12.56 8.44 -5.66 -0.05 -12.61 16 16 C -0.09 -1.66 4.64 -26.73 -0.12 -1.79 16 17 C 0.00 -0.08 3.93 -27.88 -0.11 -0.19 16 18 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 19 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 20 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 21 N -0.91 -28.16 13.96 55.43 0.77 -27.38 16 22 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 26 H 0.06 0.81 5.48 -51.93 -0.28 0.53 16 27 H 0.03 0.33 6.93 -51.93 -0.36 -0.03 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.11 1.66 5.80 -52.79 -0.31 1.35 16 30 H 0.05 0.48 8.13 -51.93 -0.42 0.05 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.44 7.03 -51.93 -0.36 0.07 16 33 H 0.07 0.71 6.33 -51.93 -0.33 0.38 16 34 H 0.07 0.58 7.10 -51.93 -0.37 0.21 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.09 5.37 -51.93 -0.28 0.81 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.33 4.46 9.06 -39.29 -0.36 4.11 16 42 H 0.35 5.52 8.58 -39.29 -0.34 5.18 16 43 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 44 H 0.06 1.11 7.53 -51.93 -0.39 0.72 16 45 H 0.01 0.26 7.20 -51.93 -0.37 -0.11 16 46 H 0.03 0.70 7.18 -51.92 -0.37 0.33 16 47 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 345.51 15.07 5.21 5.21 Total: -1.00 -30.99 345.51 -8.57 -39.56 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -8.27 Total: 6.70 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -1.15 Total: -12.35 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.25 Total: -47.99 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.05 Total: -8.45 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.99 -8.57 -39.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424131721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.891 kcal (2) G-P(sol) polarization free energy of solvation -30.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds