Wall clock time and date at job start Tue Mar 31 2020 05:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.46911 * 2 1 4 4 C 1.53001 * 109.47061 * 120.00408 * 2 1 3 5 5 H 1.09005 * 109.69784 * 187.78668 * 4 2 1 6 6 C 1.53618 * 109.66253 * 308.37291 * 4 2 1 7 7 C 1.53045 * 109.24108 * 174.55315 * 6 4 2 8 8 C 1.53041 * 109.53770 * 298.51074 * 7 6 4 9 9 C 1.53197 * 109.30859 * 61.36488 * 8 7 6 10 10 N 1.46920 * 109.58883 * 67.43110 * 4 2 1 11 11 C 1.34771 * 120.63068 * 6.62183 * 10 4 2 12 12 O 1.21283 * 120.00515 * 355.64145 * 11 10 4 13 13 C 1.50707 * 120.00128 * 175.91200 * 11 10 4 14 14 H 1.08998 * 109.46797 * 39.72313 * 13 11 10 15 15 N 1.46894 * 109.47141 * 159.72603 * 13 11 10 16 16 C 1.52997 * 109.46869 * 279.72981 * 13 11 10 17 17 C 1.53002 * 109.47264 * 174.99979 * 16 13 11 18 18 C 1.50698 * 109.47525 * 179.97438 * 17 16 13 19 19 H 1.08000 * 119.99692 * 359.97438 * 18 17 16 20 20 C 1.37880 * 120.00104 * 179.97438 * 18 17 16 21 21 N 1.31509 * 119.99888 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99920 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47161 * 89.99485 * 22 20 18 24 24 H 1.48491 * 109.47064 * 209.99862 * 22 20 18 25 25 H 1.48504 * 109.46958 * 329.99591 * 22 20 18 26 26 H 1.09001 * 109.46653 * 192.86502 * 1 2 3 27 27 H 1.08998 * 109.47001 * 312.86313 * 1 2 3 28 28 H 1.08996 * 109.46960 * 72.86740 * 1 2 3 29 29 H 1.09008 * 109.47084 * 240.00123 * 2 1 3 30 30 H 1.09002 * 109.47198 * 174.38476 * 3 2 1 31 31 H 1.08994 * 109.47495 * 294.38483 * 3 2 1 32 32 H 1.08999 * 109.47589 * 54.39051 * 3 2 1 33 33 H 1.08996 * 109.63670 * 54.56540 * 6 4 2 34 34 H 1.09003 * 109.46243 * 294.43778 * 6 4 2 35 35 H 1.08999 * 109.45807 * 178.49439 * 7 6 4 36 36 H 1.08996 * 109.44875 * 58.52728 * 7 6 4 37 37 H 1.08999 * 109.49813 * 301.41653 * 8 7 6 38 38 H 1.08996 * 109.50053 * 181.31445 * 8 7 6 39 39 H 1.09002 * 109.58375 * 185.57507 * 9 8 7 40 40 H 1.08994 * 109.70482 * 65.22670 * 9 8 7 41 41 H 1.00901 * 111.00353 * 296.04735 * 15 13 11 42 42 H 1.00900 * 110.99881 * 60.00183 * 15 13 11 43 43 H 1.09009 * 109.46929 * 294.99502 * 16 13 11 44 44 H 1.08996 * 109.48036 * 54.99697 * 16 13 11 45 45 H 1.09002 * 109.46928 * 299.99953 * 17 16 13 46 46 H 1.09007 * 109.47199 * 59.99204 * 17 16 13 47 47 H 0.96998 * 119.99693 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1212 -0.6047 1.3252 6 6 1.3657 -0.1326 2.4976 7 6 1.7776 -0.9481 3.7254 8 6 1.3062 -2.3947 3.5607 9 6 1.9748 -3.0080 2.3262 10 7 1.7034 -2.1490 1.1655 11 6 1.1609 -2.6620 0.0435 12 8 0.8731 -1.9307 -0.8802 13 6 0.9063 -4.1437 -0.0611 14 1 0.5345 -4.5167 0.8932 15 7 -0.0924 -4.3962 -1.1083 16 6 2.2101 -4.8613 -0.4160 17 6 1.9805 -6.3739 -0.3999 18 6 3.2645 -7.0808 -0.7501 19 1 4.1552 -6.5084 -0.9632 20 6 3.3021 -8.4583 -0.7984 21 7 4.4228 -9.0751 -1.1034 22 14 1.7613 -9.4482 -0.4305 23 1 1.0048 -9.6724 -1.6885 24 1 2.1427 -10.7572 0.1578 25 1 0.9114 -8.7018 0.5318 26 1 -0.3633 -1.0019 0.2288 27 1 -0.3633 0.6991 0.7532 28 1 -0.3633 0.3027 -0.9820 29 1 1.8934 -0.5139 -0.8901 30 1 3.1253 1.4442 0.1006 31 1 1.7611 1.9265 -0.9359 32 1 1.5970 1.9845 0.8355 33 1 0.2826 -0.1717 2.3817 34 1 1.6806 0.9030 2.6262 35 1 1.3223 -0.5171 4.6170 36 1 2.8628 -0.9290 3.8263 37 1 0.2237 -2.4125 3.4346 38 1 1.5794 -2.9694 4.4456 39 1 1.5684 -4.0034 2.1472 40 1 3.0507 -3.0761 2.4867 41 1 -0.9820 -3.9864 -0.8660 42 1 0.2292 -4.0592 -2.0034 43 1 2.5353 -4.5538 -1.4099 44 1 2.9776 -4.6027 0.3135 45 1 1.6553 -6.6815 0.5939 46 1 1.2130 -6.6327 -1.1295 47 1 4.4492 -10.0441 -1.1378 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424131721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:50 Heat of formation + Delta-G solvation = -51.906064 kcal Electronic energy + Delta-G solvation = -24098.230552 eV Core-core repulsion = 20894.145621 eV Total energy + Delta-G solvation = -3204.084931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.06383 -38.75710 -37.30799 -35.80736 -34.68559 -33.77581 -32.27585 -30.73119 -28.58845 -28.03598 -26.54970 -25.04754 -24.35045 -22.27081 -21.59514 -21.08139 -19.77434 -18.82146 -17.93200 -17.20249 -16.90719 -16.33183 -16.17783 -15.98082 -15.57886 -15.41549 -15.04838 -14.73554 -14.61707 -14.50826 -13.93325 -13.85771 -13.70281 -13.47570 -13.43123 -12.91965 -12.82633 -12.64655 -12.55148 -12.03469 -11.85650 -11.84479 -11.75821 -11.66719 -11.58429 -11.57578 -11.43985 -11.24715 -11.22306 -10.71891 -10.37518 -9.53700 -9.33053 -8.24929 -6.28179 1.41364 1.42571 1.55231 1.57931 2.03818 2.41356 3.11777 3.45906 3.62565 3.82460 3.85386 3.94101 4.03562 4.11754 4.21731 4.23695 4.28766 4.34461 4.41217 4.64284 4.68368 4.71508 4.76872 4.81788 4.85144 4.91960 4.96062 5.06244 5.07658 5.10880 5.13200 5.16551 5.21624 5.31673 5.42364 5.45613 5.50104 5.54738 5.64961 5.72543 5.82637 6.09831 6.32520 6.43913 6.52382 6.80167 7.20563 7.36412 8.92098 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023311 B = 0.004398 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.869595 B = 6365.190121 C = 6772.606527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.094 4.094 3 C -0.147 4.147 4 C 0.145 3.855 5 H 0.068 0.932 6 C -0.126 4.126 7 C -0.118 4.118 8 C -0.129 4.129 9 C 0.094 3.906 10 N -0.600 5.600 11 C 0.478 3.522 12 O -0.550 6.550 13 C 0.081 3.919 14 H 0.111 0.889 15 N -0.818 5.818 16 C -0.075 4.075 17 C 0.005 3.995 18 C -0.531 4.531 19 H 0.027 0.973 20 C 0.004 3.996 21 N -0.955 5.955 22 Si 0.953 3.047 23 H -0.272 1.272 24 H -0.286 1.286 25 H -0.242 1.242 26 H 0.042 0.958 27 H 0.047 0.953 28 H 0.033 0.967 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.347 0.653 42 H 0.345 0.655 43 H 0.037 0.963 44 H 0.060 0.940 45 H 0.022 0.978 46 H 0.026 0.974 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.685 20.183 11.616 25.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.113 4.113 3 C -0.204 4.204 4 C 0.042 3.958 5 H 0.086 0.914 6 C -0.164 4.164 7 C -0.156 4.156 8 C -0.167 4.167 9 C -0.028 4.028 10 N -0.333 5.333 11 C 0.266 3.734 12 O -0.430 6.430 13 C -0.035 4.035 14 H 0.128 0.872 15 N -0.347 5.347 16 C -0.114 4.114 17 C -0.033 4.033 18 C -0.569 4.569 19 H 0.045 0.955 20 C -0.192 4.192 21 N -0.596 5.596 22 Si 0.776 3.224 23 H -0.198 1.198 24 H -0.212 1.212 25 H -0.165 1.165 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.160 0.840 42 H 0.159 0.841 43 H 0.056 0.944 44 H 0.079 0.921 45 H 0.041 0.959 46 H 0.044 0.956 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.659 19.624 11.285 24.612 hybrid contribution 0.076 0.179 -0.473 0.511 sum -9.584 19.802 10.812 24.513 Atomic orbital electron populations 1.21738 0.94984 0.99989 0.99707 1.21607 0.96702 0.95461 0.97511 1.21931 1.00912 0.95565 1.02018 1.21584 0.98598 0.79254 0.96364 0.91375 1.22090 1.00817 1.00050 0.93420 1.21534 1.01556 0.94618 0.97848 1.21891 1.00509 0.97043 0.97220 1.22041 1.01316 0.94264 0.85202 1.48229 1.61187 1.09618 1.14246 1.22106 0.76952 0.92060 0.82315 1.90701 1.52290 1.59923 1.40122 1.21687 0.94813 0.89108 0.97859 0.87156 1.59031 1.05200 1.65528 1.04969 1.21208 0.93986 0.96074 1.00126 1.19349 0.94798 0.92236 0.96879 1.21545 0.96823 0.92003 1.46505 0.95501 1.25993 0.99510 0.99237 0.94461 1.70080 1.28924 1.09409 1.51193 0.85618 0.79550 0.77579 0.79605 1.19787 1.21186 1.16473 0.93917 0.93395 0.94748 0.90679 0.92618 0.92954 0.91533 0.91688 0.89598 0.90202 0.91470 0.91772 0.88963 0.89387 0.90836 0.83995 0.84124 0.94415 0.92108 0.95932 0.95570 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.54 6.74 71.98 0.48 -2.06 16 2 C -0.09 -2.21 2.16 -10.79 -0.02 -2.23 16 3 C -0.15 -2.67 8.87 71.98 0.64 -2.04 16 4 C 0.14 3.05 2.65 45.12 0.12 3.17 16 5 H 0.07 1.44 8.13 -2.38 -0.02 1.42 16 6 C -0.13 -1.96 4.69 30.82 0.14 -1.82 16 7 C -0.12 -1.56 5.88 30.62 0.18 -1.38 16 8 C -0.13 -1.91 6.08 30.67 0.19 -1.72 16 9 C 0.09 1.90 5.71 86.36 0.49 2.39 16 10 N -0.60 -14.30 2.88 -794.23 -2.29 -16.59 16 11 C 0.48 13.79 5.80 87.66 0.51 14.30 16 12 O -0.55 -17.65 9.77 -3.04 -0.03 -17.68 16 13 C 0.08 2.46 2.31 44.17 0.10 2.56 16 14 H 0.11 3.03 6.35 -2.39 -0.02 3.02 16 15 N -0.82 -24.61 8.44 -171.81 -1.45 -26.06 16 16 C -0.08 -2.93 4.64 30.59 0.14 -2.78 16 17 C 0.00 0.23 3.93 29.85 0.12 0.34 16 18 C -0.53 -30.88 9.66 25.60 0.25 -30.63 16 19 H 0.03 1.73 7.99 -2.91 -0.02 1.70 16 20 C 0.00 0.25 5.47 84.66 0.46 0.71 16 21 N -0.95 -60.70 13.96 21.45 0.30 -60.40 16 22 Si 0.95 44.92 27.47 68.60 1.88 46.80 16 23 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 25 H -0.24 -10.41 6.54 99.48 0.65 -9.76 16 26 H 0.04 1.14 5.48 -2.39 -0.01 1.13 16 27 H 0.05 0.95 6.93 -2.39 -0.02 0.93 16 28 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.08 2.31 5.80 -16.02 -0.09 2.22 16 30 H 0.05 0.96 8.13 -2.39 -0.02 0.94 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 0.99 7.03 -2.39 -0.02 0.98 16 33 H 0.06 1.12 6.33 -2.39 -0.02 1.10 16 34 H 0.09 1.10 7.10 -2.39 -0.02 1.09 16 35 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.09 1.89 5.37 -2.39 -0.01 1.87 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.35 8.84 9.06 -89.69 -0.81 8.02 16 42 H 0.35 10.90 8.58 -89.69 -0.77 10.13 16 43 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 44 H 0.06 2.30 7.53 -2.39 -0.02 2.28 16 45 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 46 H 0.03 1.23 7.18 -2.38 -0.02 1.22 16 47 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -68.16 345.51 1.46 -66.69 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: -0.76 Total: 28.42 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: 3.80 Total: -21.19 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -3.44 Total: -103.05 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.03 Total: -17.68 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.80 kcal Total: -68.16 1.46 -66.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424131721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.787 kcal (2) G-P(sol) polarization free energy of solvation -68.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds