Wall clock time and date at job start Tue Mar 31 2020 05:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47526 * 2 1 4 4 C 1.53003 * 109.47302 * 240.00005 * 2 1 3 5 5 H 1.08993 * 109.58925 * 174.81239 * 4 2 1 6 6 C 1.53188 * 109.58447 * 54.52681 * 4 2 1 7 7 C 1.53047 * 109.31198 * 185.58151 * 6 4 2 8 8 C 1.53035 * 109.53758 * 61.36113 * 7 6 4 9 9 C 1.53194 * 109.31537 * 298.63662 * 8 7 6 10 10 N 1.46922 * 108.77322 * 54.63519 * 9 8 7 11 11 C 1.34780 * 120.62904 * 126.39124 * 10 9 8 12 12 O 1.21283 * 120.00113 * 173.66323 * 11 10 9 13 13 C 1.50704 * 120.00320 * 353.66772 * 11 10 9 14 14 H 1.09003 * 109.47016 * 39.99634 * 13 11 10 15 15 N 1.46894 * 109.47484 * 159.99933 * 13 11 10 16 16 C 1.53001 * 109.46646 * 280.00178 * 13 11 10 17 17 C 1.53000 * 109.47058 * 175.00072 * 16 13 11 18 18 C 1.50704 * 109.47311 * 179.97438 * 17 16 13 19 19 H 1.07996 * 119.99608 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99581 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00259 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99326 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47159 * 90.00061 * 22 20 18 24 24 H 1.48500 * 109.46780 * 209.99775 * 22 20 18 25 25 H 1.48502 * 109.47253 * 329.99717 * 22 20 18 26 26 H 1.09004 * 109.47177 * 288.72006 * 1 2 3 27 27 H 1.08999 * 109.47201 * 48.71719 * 1 2 3 28 28 H 1.09001 * 109.47437 * 168.71836 * 1 2 3 29 29 H 1.09001 * 109.46983 * 119.99717 * 2 1 3 30 30 H 1.08995 * 109.47140 * 307.46298 * 3 2 1 31 31 H 1.09008 * 109.47189 * 67.45550 * 3 2 1 32 32 H 1.08995 * 109.47940 * 187.46004 * 3 2 1 33 33 H 1.09006 * 109.49667 * 305.52634 * 6 4 2 34 34 H 1.08992 * 109.50199 * 65.59465 * 6 4 2 35 35 H 1.08999 * 109.46058 * 181.38374 * 7 6 4 36 36 H 1.08996 * 109.45511 * 301.34410 * 7 6 4 37 37 H 1.09010 * 109.49868 * 58.58751 * 8 7 6 38 38 H 1.09004 * 109.50173 * 178.68300 * 8 7 6 39 39 H 1.09001 * 109.58568 * 174.42358 * 9 8 7 40 40 H 1.08995 * 109.58388 * 294.70520 * 9 8 7 41 41 H 1.00901 * 111.00103 * 59.99591 * 15 13 11 42 42 H 1.00898 * 110.99796 * 183.95752 * 15 13 11 43 43 H 1.09004 * 109.47099 * 294.99486 * 16 13 11 44 44 H 1.08996 * 109.47514 * 54.99357 * 16 13 11 45 45 H 1.09004 * 109.46687 * 299.99666 * 17 16 13 46 46 H 1.08996 * 109.47542 * 59.99302 * 17 16 13 47 47 H 0.97006 * 119.99703 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 3.1259 -0.6427 -1.2988 6 6 1.4215 -0.0850 -2.4980 7 6 1.8244 -0.8961 -3.7317 8 6 1.2901 -2.3243 -3.6021 9 6 1.9071 -2.9859 -2.3658 10 7 1.6477 -2.1361 -1.1957 11 6 1.0611 -2.6449 -0.0941 12 8 0.9562 -1.9661 0.9055 13 6 0.5356 -4.0573 -0.1043 14 1 1.2323 -4.7003 -0.6421 15 7 0.3931 -4.5368 1.2769 16 6 -0.8276 -4.0892 -0.7984 17 6 -1.3042 -5.5379 -0.9199 18 6 -2.6472 -5.5693 -1.6031 19 1 -3.1141 -4.6481 -1.9185 20 6 -3.2795 -6.7743 -1.8252 21 7 -2.7106 -7.8961 -1.4415 22 14 -4.9445 -6.8131 -2.6714 23 1 -4.7512 -6.9270 -4.1394 24 1 -5.7211 -7.9805 -2.1823 25 1 -5.6847 -5.5626 -2.3651 26 1 -0.3634 0.3298 0.9733 27 1 -0.3633 0.6780 -0.7722 28 1 -0.3634 -1.0078 -0.2010 29 1 1.8932 -0.5138 0.8900 30 1 1.5719 1.9934 -0.8157 31 1 1.7897 1.9164 0.9492 32 1 3.1218 1.4454 -0.1334 33 1 0.3355 -0.0807 -2.4042 34 1 1.7818 0.9384 -2.6013 35 1 1.4059 -0.4314 -4.6244 36 1 2.9112 -0.9208 -3.8109 37 1 0.2053 -2.2989 -3.4979 38 1 1.5573 -2.8949 -4.4916 39 1 1.4561 -3.9664 -2.2127 40 1 2.9820 -3.0965 -2.5088 41 1 -0.2482 -3.9567 1.7968 42 1 0.1036 -5.5032 1.2961 43 1 -1.5473 -3.5179 -0.2120 44 1 -0.7395 -3.6510 -1.7925 45 1 -0.5845 -6.1092 -1.5063 46 1 -1.3923 -5.9761 0.0742 47 1 -3.1557 -8.7438 -1.5975 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424131722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:55 Heat of formation + Delta-G solvation = -37.939509 kcal Electronic energy + Delta-G solvation = -24271.159484 eV Core-core repulsion = 21067.680188 eV Total energy + Delta-G solvation = -3203.479296 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.86390 -37.53412 -36.05341 -34.60994 -32.84212 -32.69585 -29.94496 -29.71101 -27.02580 -26.88445 -25.13002 -24.00880 -23.21834 -20.92454 -20.66709 -19.82092 -18.47514 -16.98746 -16.25261 -15.85090 -15.32459 -15.11322 -14.79311 -14.59769 -14.45369 -14.11299 -13.73330 -13.54871 -13.18714 -13.07767 -12.77705 -12.59529 -12.29650 -12.14078 -11.95734 -11.69041 -11.62599 -11.19453 -11.03585 -10.92960 -10.89256 -10.78429 -10.65028 -10.60408 -10.48024 -10.22934 -9.97321 -9.62923 -9.25152 -8.62519 -8.44431 -8.38643 -8.07092 -6.09079 -4.12063 2.95095 3.13234 3.26182 3.33250 3.36528 4.38707 4.56661 4.74234 4.80397 4.95493 5.05335 5.14940 5.20610 5.23346 5.27349 5.31236 5.32031 5.52139 5.56222 5.65136 5.68277 5.78500 5.79215 5.83593 5.88955 5.94574 6.01085 6.03053 6.05086 6.13447 6.27027 6.33488 6.35925 6.52450 6.56682 6.63969 6.88638 6.93126 7.45505 7.52002 7.61341 7.70924 7.88063 7.92929 8.30934 8.55411 8.93828 9.52899 11.01788 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020135 B = 0.004659 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.300390 B = 6008.382308 C = 6449.331700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C -0.150 4.150 4 C 0.155 3.845 5 H 0.065 0.935 6 C -0.135 4.135 7 C -0.119 4.119 8 C -0.137 4.137 9 C 0.104 3.896 10 N -0.610 5.610 11 C 0.527 3.473 12 O -0.523 6.523 13 C 0.070 3.930 14 H 0.094 0.906 15 N -0.830 5.830 16 C -0.136 4.136 17 C 0.025 3.975 18 C -0.522 4.522 19 H 0.054 0.946 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.891 3.109 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.047 0.953 27 H 0.034 0.966 28 H 0.059 0.941 29 H 0.118 0.882 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.345 0.655 42 H 0.353 0.647 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.017 0.983 46 H 0.017 0.983 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.962 13.988 -2.581 17.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.122 4.122 3 C -0.208 4.208 4 C 0.052 3.948 5 H 0.083 0.917 6 C -0.173 4.173 7 C -0.156 4.156 8 C -0.175 4.175 9 C -0.019 4.019 10 N -0.344 5.344 11 C 0.317 3.683 12 O -0.400 6.400 13 C -0.045 4.045 14 H 0.112 0.888 15 N -0.362 5.362 16 C -0.176 4.176 17 C -0.012 4.012 18 C -0.561 4.561 19 H 0.072 0.928 20 C -0.142 4.142 21 N -0.532 5.532 22 Si 0.719 3.281 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.136 0.864 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.083 0.917 41 H 0.158 0.842 42 H 0.168 0.832 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.035 0.965 46 H 0.035 0.965 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.661 14.297 -1.955 18.553 hybrid contribution -1.970 -0.307 -1.029 2.244 sum 9.691 13.990 -2.984 17.278 Atomic orbital electron populations 1.21904 0.94881 1.01391 1.00148 1.21848 0.96899 0.94379 0.99075 1.21982 1.00312 0.97132 1.01387 1.21275 0.97827 0.80107 0.95639 0.91706 1.22082 1.02057 0.98919 0.94262 1.21516 1.00636 0.95623 0.97840 1.21929 1.01692 0.96125 0.97749 1.21813 1.00277 0.94853 0.84963 1.48050 1.61157 1.09953 1.15264 1.20703 0.76308 0.89170 0.82167 1.90595 1.56454 1.59845 1.33116 1.21567 0.98554 0.92451 0.91890 0.88819 1.58760 1.58128 1.08141 1.11197 1.22372 0.93481 1.02266 0.99475 1.19092 0.96184 0.88732 0.97169 1.21166 1.03800 0.92553 1.38536 0.92797 1.24997 0.97801 0.95707 0.95707 1.69948 1.38628 0.97627 1.46990 0.86609 0.84092 0.77651 0.79762 1.20612 1.21145 1.19903 0.93361 0.94707 0.92166 0.86420 0.93254 0.92784 0.93256 0.90926 0.91150 0.91903 0.92130 0.90925 0.90693 0.88737 0.91654 0.84227 0.83228 0.92835 0.92513 0.96450 0.96465 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 7.05 37.15 0.26 -1.55 16 2 C -0.10 -1.35 2.16 -90.62 -0.20 -1.55 16 3 C -0.15 -1.58 8.78 37.16 0.33 -1.25 16 4 C 0.15 1.87 2.66 -67.60 -0.18 1.69 16 5 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 6 C -0.14 -1.43 4.69 -26.61 -0.12 -1.55 16 7 C -0.12 -1.14 5.88 -26.69 -0.16 -1.29 16 8 C -0.14 -1.49 6.08 -26.61 -0.16 -1.65 16 9 C 0.10 1.23 5.90 -3.71 -0.02 1.21 16 10 N -0.61 -8.28 2.90 -165.23 -0.48 -8.76 16 11 C 0.53 8.57 5.32 -10.98 -0.06 8.52 16 12 O -0.52 -9.34 10.32 5.56 0.06 -9.29 16 13 C 0.07 1.19 2.35 -68.87 -0.16 1.03 16 14 H 0.09 1.54 6.50 -51.93 -0.34 1.20 16 15 N -0.83 -14.28 8.94 -5.65 -0.05 -14.33 16 16 C -0.14 -2.65 4.55 -26.73 -0.12 -2.78 16 17 C 0.03 0.61 4.74 -27.88 -0.13 0.48 16 18 C -0.52 -14.20 9.11 -34.44 -0.31 -14.51 16 19 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 22 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.03 0.45 6.82 -51.93 -0.35 0.09 16 28 H 0.06 1.00 5.29 -51.93 -0.27 0.73 16 29 H 0.12 1.85 5.67 -53.23 -0.30 1.55 16 30 H 0.05 0.48 7.02 -51.93 -0.36 0.11 16 31 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.05 0.47 8.13 -51.93 -0.42 0.04 16 33 H 0.07 0.88 6.30 -51.93 -0.33 0.55 16 34 H 0.07 0.65 7.05 -51.93 -0.37 0.28 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.92 8.04 -51.92 -0.42 0.51 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 1.22 5.11 -51.93 -0.27 0.96 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.34 5.99 8.58 -39.29 -0.34 5.65 16 42 H 0.35 6.12 7.55 -39.29 -0.30 5.83 16 43 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.06 1.08 7.37 -51.93 -0.38 0.69 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.02 0.43 6.87 -51.93 -0.36 0.08 16 47 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 LS Contribution 346.67 15.07 5.22 5.22 Total: -1.00 -29.12 346.67 -8.82 -37.94 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -8.15 Total: 9.84 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -1.14 Total: -11.65 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: 0.21 Total: -48.22 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.06 Total: -9.29 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.12 -8.82 -37.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424131722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.003 kcal (2) G-P(sol) polarization free energy of solvation -29.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds