Wall clock time and date at job start Tue Mar 31 2020 05:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47048 * 2 1 4 4 C 1.52996 * 109.47747 * 120.00340 * 2 1 3 5 5 C 1.53002 * 109.46950 * 65.86740 * 4 2 1 6 6 H 1.09003 * 110.91658 * 309.29057 * 5 4 2 7 7 C 1.55166 * 111.00367 * 73.18842 * 5 4 2 8 8 C 1.54321 * 102.94035 * 153.57663 * 7 5 4 9 9 N 1.47026 * 107.27220 * 337.80951 * 8 7 5 10 10 C 1.34780 * 125.64664 * 178.96410 * 9 8 7 11 11 O 1.21276 * 119.99876 * 179.97438 * 10 9 8 12 12 C 1.50698 * 119.99863 * 359.97438 * 10 9 8 13 13 H 1.08997 * 109.47320 * 319.99844 * 12 10 9 14 14 N 1.46908 * 109.46801 * 200.00172 * 12 10 9 15 15 C 1.53002 * 109.47329 * 79.99995 * 12 10 9 16 16 C 1.52999 * 109.46930 * 184.99522 * 15 12 10 17 17 C 1.50704 * 109.47113 * 180.02562 * 16 15 12 18 18 H 1.08001 * 119.99535 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00330 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99630 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99954 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47346 * 59.99814 * 21 19 17 23 23 H 1.48499 * 109.47001 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47212 * 299.99672 * 21 19 17 25 25 C 1.47422 * 108.70373 * 358.93748 * 9 8 7 26 26 H 1.08995 * 109.46794 * 299.99084 * 1 2 3 27 27 H 1.08997 * 109.47400 * 59.99891 * 1 2 3 28 28 H 1.09006 * 109.46955 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47238 * 240.00686 * 2 1 3 30 30 H 1.09008 * 109.46610 * 59.74201 * 3 2 1 31 31 H 1.09002 * 109.47415 * 179.73711 * 3 2 1 32 32 H 1.08996 * 109.47557 * 299.74650 * 3 2 1 33 33 H 1.09001 * 109.47219 * 305.87202 * 4 2 1 34 34 H 1.08990 * 109.47355 * 185.86469 * 4 2 1 35 35 H 1.08995 * 110.71680 * 35.21510 * 7 5 4 36 36 H 1.08996 * 110.87055 * 272.01122 * 7 5 4 37 37 H 1.09005 * 109.88277 * 218.39365 * 8 7 5 38 38 H 1.09002 * 110.01092 * 97.29910 * 8 7 5 39 39 H 1.00897 * 110.99738 * 176.04768 * 14 12 10 40 40 H 1.00900 * 110.99839 * 299.99888 * 14 12 10 41 41 H 1.08997 * 109.47020 * 304.99885 * 15 12 10 42 42 H 1.09005 * 109.46768 * 65.00184 * 15 12 10 43 43 H 1.08997 * 109.47565 * 300.00029 * 16 15 12 44 44 H 1.08996 * 109.46928 * 60.00572 * 16 15 12 45 45 H 0.97000 * 119.99213 * 179.97438 * 20 19 17 46 46 H 1.09002 * 110.36480 * 142.96794 * 25 9 8 47 47 H 1.08998 * 110.37138 * 265.29214 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6542 -2.2001 1.1775 6 1 0.5925 -2.3150 0.9590 7 6 2.5214 -2.9512 0.1328 8 6 2.5118 -4.4032 0.6556 9 7 2.1956 -4.3485 2.0904 10 6 2.0735 -5.4123 2.9089 11 8 1.8093 -5.2482 4.0811 12 6 2.2653 -6.8055 2.3675 13 1 1.8071 -6.8783 1.3811 14 7 1.6335 -7.7741 3.2735 15 6 3.7609 -7.1091 2.2587 16 6 3.9574 -8.4730 1.5939 17 6 5.4305 -8.7724 1.4873 18 1 6.1542 -8.0607 1.8565 19 6 5.8544 -9.9543 0.9177 20 7 4.9731 -10.8206 0.4677 21 14 7.6804 -10.3255 0.7863 22 1 8.2803 -10.3465 2.1445 23 1 7.8712 -11.6493 0.1410 24 1 8.3414 -9.2763 -0.0306 25 6 2.0349 -2.9373 2.4856 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8901 30 1 1.6728 1.9576 0.8878 31 1 3.1300 1.4426 0.0047 32 1 1.6804 1.9551 -0.8922 33 1 1.5936 -0.2718 2.1361 34 1 3.1250 -0.6312 1.3031 35 1 3.5362 -2.5538 0.1167 36 1 2.0710 -2.8951 -0.8582 37 1 3.4923 -4.8564 0.5090 38 1 1.7530 -4.9836 0.1306 39 1 1.6921 -8.7097 2.9003 40 1 2.0412 -7.7263 4.1952 41 1 4.2452 -6.3390 1.6583 42 1 4.2020 -7.1238 3.2554 43 1 3.4730 -9.2431 2.1943 44 1 3.5163 -8.4583 0.5973 45 1 5.2714 -11.6519 0.0667 46 1 1.2380 -2.8382 3.2226 47 1 2.9712 -2.5456 2.8830 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424134061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:41 Heat of formation + Delta-G solvation = -72.335195 kcal Electronic energy + Delta-G solvation = -22690.635004 eV Core-core repulsion = 19485.664200 eV Total energy + Delta-G solvation = -3204.970805 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.11774 -38.22305 -36.06124 -35.41728 -32.84743 -31.86942 -29.87677 -29.51376 -27.50011 -27.26539 -25.65360 -23.90877 -22.66400 -21.14089 -20.34035 -19.93867 -18.79756 -17.37720 -16.49426 -16.26342 -15.28667 -15.14891 -14.94997 -14.49369 -14.31383 -14.01276 -13.79028 -13.68136 -13.52789 -13.07272 -12.81482 -12.68433 -12.54996 -12.33453 -12.11099 -11.96904 -11.74598 -11.64540 -11.29730 -11.19986 -11.04132 -10.90904 -10.74829 -10.69841 -10.62858 -10.58529 -9.95187 -9.87875 -9.28069 -9.18626 -8.50685 -8.43291 -8.15658 -6.08398 -4.11561 2.96801 3.11611 3.28310 3.33178 3.35667 4.20386 4.39288 4.43897 4.49359 4.67144 4.73037 4.92330 5.03496 5.16649 5.18365 5.23543 5.27623 5.28574 5.32942 5.42492 5.49513 5.55785 5.59822 5.61902 5.66775 5.71159 5.77327 5.79633 5.80880 5.87779 5.92277 5.99458 6.11378 6.18803 6.32130 6.40882 6.56261 6.88562 7.46254 7.52684 7.62672 7.73469 7.88675 7.93290 8.31434 8.47694 8.94134 9.53213 11.02505 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020834 B = 0.003302 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.604333 B = 8478.416860 C = 9300.831452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.103 4.103 5 C -0.103 4.103 6 H 0.087 0.913 7 C -0.125 4.125 8 C 0.096 3.904 9 N -0.622 5.622 10 C 0.541 3.459 11 O -0.540 6.540 12 C 0.079 3.921 13 H 0.095 0.905 14 N -0.831 5.831 15 C -0.137 4.137 16 C 0.026 3.974 17 C -0.524 4.524 18 H 0.054 0.946 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 C 0.111 3.889 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.354 0.646 40 H 0.345 0.655 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.262 0.738 46 H 0.074 0.926 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.474 20.940 -2.846 22.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 C -0.205 4.205 4 C -0.141 4.141 5 C -0.122 4.122 6 H 0.105 0.895 7 C -0.163 4.163 8 C -0.027 4.027 9 N -0.357 5.357 10 C 0.330 3.670 11 O -0.416 6.416 12 C -0.036 4.036 13 H 0.113 0.887 14 N -0.363 5.363 15 C -0.176 4.176 16 C -0.011 4.011 17 C -0.562 4.562 18 H 0.072 0.928 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.012 4.012 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.169 0.831 40 H 0.158 0.842 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.072 0.928 46 H 0.093 0.907 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.323 21.158 -2.365 22.858 hybrid contribution 2.049 -0.735 -0.180 2.184 sum -6.275 20.423 -2.544 21.516 Atomic orbital electron populations 1.21907 0.95316 1.01938 1.01573 1.21106 0.95877 0.96010 0.98512 1.21846 1.00973 0.96072 1.01637 1.21581 1.01135 0.93373 0.98043 1.22470 1.00559 0.94447 0.94743 0.89476 1.22719 1.00793 0.93900 0.98917 1.22133 1.01817 0.97733 0.81047 1.48450 1.71370 1.05913 1.10006 1.20603 0.75063 0.85884 0.85435 1.90629 1.48153 1.86152 1.16682 1.21441 0.96366 0.88694 0.97133 0.88721 1.58749 1.61917 1.09734 1.05933 1.22374 0.92036 1.01755 1.01477 1.19088 0.97130 0.89463 0.95455 1.21145 0.92051 1.03421 1.39626 0.92796 1.25010 0.97698 0.96220 0.95350 1.69943 1.33529 1.09481 1.40262 0.86642 0.85443 0.77487 0.78359 1.20232 1.21206 1.20208 1.22196 1.01227 0.80915 0.96837 0.92766 0.92926 0.92341 0.90963 0.92781 0.92697 0.92822 0.91602 0.91490 0.90440 0.90058 0.90496 0.91222 0.83071 0.84159 0.92542 0.92758 0.96422 0.96360 0.92821 0.90741 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 8.99 37.16 0.33 -0.64 16 2 C -0.10 -0.63 2.87 -90.62 -0.26 -0.89 16 3 C -0.15 -0.89 9.19 37.16 0.34 -0.55 16 4 C -0.10 -0.75 4.18 -26.73 -0.11 -0.86 16 5 C -0.10 -0.90 2.89 -88.46 -0.26 -1.16 16 6 H 0.09 0.77 6.34 -51.93 -0.33 0.44 16 7 C -0.13 -1.10 5.84 -24.89 -0.15 -1.25 16 8 C 0.10 1.14 6.20 -3.06 -0.02 1.12 16 9 N -0.62 -9.01 3.33 -170.52 -0.57 -9.58 16 10 C 0.54 9.74 7.10 -10.99 -0.08 9.66 16 11 O -0.54 -11.31 16.51 5.56 0.09 -11.22 16 12 C 0.08 1.42 2.62 -68.86 -0.18 1.24 16 13 H 0.09 1.63 7.46 -51.93 -0.39 1.24 16 14 N -0.83 -15.04 8.94 -5.65 -0.05 -15.09 16 15 C -0.14 -2.77 4.77 -26.73 -0.13 -2.90 16 16 C 0.03 0.63 4.74 -27.88 -0.13 0.50 16 17 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 18 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 21 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 25 C 0.11 1.33 6.38 -2.53 -0.02 1.32 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.40 6.45 -51.93 -0.33 0.06 16 29 H 0.07 0.48 7.61 -51.93 -0.40 0.08 16 30 H 0.05 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.49 7.96 -51.93 -0.41 0.07 16 35 H 0.08 0.65 7.91 -51.93 -0.41 0.24 16 36 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 37 H 0.08 0.99 6.76 -51.93 -0.35 0.64 16 38 H 0.07 0.80 7.84 -51.93 -0.41 0.39 16 39 H 0.35 6.34 7.55 -39.29 -0.30 6.04 16 40 H 0.35 6.31 8.58 -39.29 -0.34 5.98 16 41 H 0.06 1.10 6.66 -51.93 -0.35 0.76 16 42 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.07 0.96 8.04 -51.93 -0.42 0.55 16 47 H 0.06 0.76 8.04 -51.93 -0.42 0.34 16 LS Contribution 366.60 15.07 5.52 5.52 Total: -1.00 -31.31 366.60 -8.89 -40.21 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -8.54 Total: 6.84 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -1.06 Total: -7.63 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.12 Total: -50.02 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.31 -8.89 -40.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424134061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.129 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds