Wall clock time and date at job start Tue Mar 31 2020 05:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47048 * 2 1 4 4 C 1.52996 * 109.47747 * 120.00340 * 2 1 3 5 5 C 1.53002 * 109.46950 * 65.86740 * 4 2 1 6 6 H 1.09003 * 110.91658 * 309.29057 * 5 4 2 7 7 C 1.55166 * 111.00367 * 73.18842 * 5 4 2 8 8 C 1.54321 * 102.94035 * 153.57663 * 7 5 4 9 9 N 1.47026 * 107.27220 * 337.80951 * 8 7 5 10 10 C 1.34780 * 125.64664 * 178.96410 * 9 8 7 11 11 O 1.21276 * 119.99876 * 179.97438 * 10 9 8 12 12 C 1.50698 * 119.99863 * 359.97438 * 10 9 8 13 13 H 1.08997 * 109.47320 * 319.99844 * 12 10 9 14 14 N 1.46908 * 109.46801 * 200.00172 * 12 10 9 15 15 C 1.53002 * 109.47329 * 79.99995 * 12 10 9 16 16 C 1.52999 * 109.46930 * 184.99522 * 15 12 10 17 17 C 1.50704 * 109.47113 * 180.02562 * 16 15 12 18 18 H 1.08001 * 119.99535 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00330 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99630 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99954 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47346 * 59.99814 * 21 19 17 23 23 H 1.48499 * 109.47001 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47212 * 299.99672 * 21 19 17 25 25 C 1.47422 * 108.70373 * 358.93748 * 9 8 7 26 26 H 1.08995 * 109.46794 * 299.99084 * 1 2 3 27 27 H 1.08997 * 109.47400 * 59.99891 * 1 2 3 28 28 H 1.09006 * 109.46955 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47238 * 240.00686 * 2 1 3 30 30 H 1.09008 * 109.46610 * 59.74201 * 3 2 1 31 31 H 1.09002 * 109.47415 * 179.73711 * 3 2 1 32 32 H 1.08996 * 109.47557 * 299.74650 * 3 2 1 33 33 H 1.09001 * 109.47219 * 305.87202 * 4 2 1 34 34 H 1.08990 * 109.47355 * 185.86469 * 4 2 1 35 35 H 1.08995 * 110.71680 * 35.21510 * 7 5 4 36 36 H 1.08996 * 110.87055 * 272.01122 * 7 5 4 37 37 H 1.09005 * 109.88277 * 218.39365 * 8 7 5 38 38 H 1.09002 * 110.01092 * 97.29910 * 8 7 5 39 39 H 1.00897 * 110.99738 * 176.04768 * 14 12 10 40 40 H 1.00900 * 110.99839 * 299.99888 * 14 12 10 41 41 H 1.08997 * 109.47020 * 304.99885 * 15 12 10 42 42 H 1.09005 * 109.46768 * 65.00184 * 15 12 10 43 43 H 1.08997 * 109.47565 * 300.00029 * 16 15 12 44 44 H 1.08996 * 109.46928 * 60.00572 * 16 15 12 45 45 H 0.97000 * 119.99213 * 179.97438 * 20 19 17 46 46 H 1.09002 * 110.36480 * 142.96794 * 25 9 8 47 47 H 1.08998 * 110.37138 * 265.29214 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6542 -2.2001 1.1775 6 1 0.5925 -2.3150 0.9590 7 6 2.5214 -2.9512 0.1328 8 6 2.5118 -4.4032 0.6556 9 7 2.1956 -4.3485 2.0904 10 6 2.0735 -5.4123 2.9089 11 8 1.8093 -5.2482 4.0811 12 6 2.2653 -6.8055 2.3675 13 1 1.8071 -6.8783 1.3811 14 7 1.6335 -7.7741 3.2735 15 6 3.7609 -7.1091 2.2587 16 6 3.9574 -8.4730 1.5939 17 6 5.4305 -8.7724 1.4873 18 1 6.1542 -8.0607 1.8565 19 6 5.8544 -9.9543 0.9177 20 7 4.9731 -10.8206 0.4677 21 14 7.6804 -10.3255 0.7863 22 1 8.2803 -10.3465 2.1445 23 1 7.8712 -11.6493 0.1410 24 1 8.3414 -9.2763 -0.0306 25 6 2.0349 -2.9373 2.4856 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8901 30 1 1.6728 1.9576 0.8878 31 1 3.1300 1.4426 0.0047 32 1 1.6804 1.9551 -0.8922 33 1 1.5936 -0.2718 2.1361 34 1 3.1250 -0.6312 1.3031 35 1 3.5362 -2.5538 0.1167 36 1 2.0710 -2.8951 -0.8582 37 1 3.4923 -4.8564 0.5090 38 1 1.7530 -4.9836 0.1306 39 1 1.6921 -8.7097 2.9003 40 1 2.0412 -7.7263 4.1952 41 1 4.2452 -6.3390 1.6583 42 1 4.2020 -7.1238 3.2554 43 1 3.4730 -9.2431 2.1943 44 1 3.5163 -8.4583 0.5973 45 1 5.2714 -11.6519 0.0667 46 1 1.2380 -2.8382 3.2226 47 1 2.9712 -2.5456 2.8830 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424134061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:40 Heat of formation + Delta-G solvation = -91.724439 kcal Electronic energy + Delta-G solvation = -22691.475785 eV Core-core repulsion = 19485.664200 eV Total energy + Delta-G solvation = -3205.811585 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.32389 -39.25875 -37.10682 -36.81197 -34.85774 -32.81043 -31.71933 -30.41112 -28.61991 -27.95418 -27.02452 -25.36851 -23.87320 -22.27980 -21.65930 -20.68081 -19.97296 -18.84236 -18.21682 -17.46585 -16.66096 -16.43816 -16.08584 -15.88319 -15.50728 -15.27217 -15.01441 -14.55602 -14.48533 -14.39569 -14.12010 -13.82590 -13.60365 -13.43178 -13.29766 -13.01427 -12.91293 -12.71803 -12.67586 -12.54397 -12.37354 -11.96018 -11.87391 -11.76779 -11.68540 -11.38111 -11.33414 -11.25446 -11.21341 -10.76535 -10.56514 -9.75828 -9.62673 -8.22091 -6.32851 1.39520 1.41292 1.49171 1.54572 1.92409 2.39491 3.11370 3.34382 3.64350 3.68658 3.73218 3.83208 4.05058 4.15029 4.19906 4.21566 4.25935 4.36711 4.45570 4.58991 4.61990 4.65196 4.75295 4.84222 4.86632 4.89606 4.94103 4.99734 5.05747 5.07007 5.12393 5.14606 5.21833 5.32844 5.35854 5.44379 5.45673 5.57922 5.60651 5.62791 5.78718 6.02597 6.19680 6.43247 6.44841 6.81770 7.10298 7.36253 8.88583 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020834 B = 0.003302 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.604333 B = 8478.416860 C = 9300.831452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.098 4.098 5 C -0.089 4.089 6 H 0.090 0.910 7 C -0.116 4.116 8 C 0.086 3.914 9 N -0.618 5.618 10 C 0.536 3.464 11 O -0.576 6.576 12 C 0.086 3.914 13 H 0.104 0.896 14 N -0.830 5.830 15 C -0.118 4.118 16 C 0.033 3.967 17 C -0.547 4.547 18 H 0.054 0.946 19 C 0.007 3.993 20 N -0.926 5.926 21 Si 0.959 3.041 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.266 1.266 25 C 0.104 3.896 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.353 0.647 40 H 0.344 0.656 41 H 0.064 0.936 42 H 0.042 0.958 43 H 0.002 0.998 44 H 0.003 0.997 45 H 0.265 0.735 46 H 0.062 0.938 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.821 22.491 -3.970 23.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.136 4.136 5 C -0.108 4.108 6 H 0.108 0.892 7 C -0.153 4.153 8 C -0.036 4.036 9 N -0.351 5.351 10 C 0.325 3.675 11 O -0.456 6.456 12 C -0.029 4.029 13 H 0.122 0.878 14 N -0.362 5.362 15 C -0.158 4.158 16 C -0.004 4.004 17 C -0.585 4.585 18 H 0.072 0.928 19 C -0.192 4.192 20 N -0.566 5.566 21 Si 0.784 3.216 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.191 1.191 25 C -0.018 4.018 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.122 0.878 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.169 0.831 40 H 0.157 0.843 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.020 0.980 44 H 0.021 0.979 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.668 22.748 -3.520 24.262 hybrid contribution 1.815 -1.194 0.156 2.178 sum -5.853 21.554 -3.365 22.586 Atomic orbital electron populations 1.21911 0.95322 1.01785 1.01765 1.21082 0.95820 0.96225 0.98070 1.21838 1.01059 0.95741 1.01851 1.21550 1.01362 0.92111 0.98612 1.22403 1.00748 0.95044 0.92614 0.89182 1.22734 1.01559 0.91375 0.99681 1.22375 1.01441 1.00206 0.79548 1.48515 1.69503 1.06233 1.10896 1.20472 0.75280 0.86464 0.85239 1.90606 1.50213 1.86677 1.18105 1.21348 0.94694 0.89231 0.97645 0.87770 1.58761 1.61741 1.09773 1.05902 1.22108 0.93862 0.99579 1.00267 1.18935 0.95553 0.91280 0.94611 1.21570 0.93537 1.03724 1.39621 0.92774 1.25865 1.02366 0.96054 0.94927 1.70058 1.35636 1.09924 1.40977 0.85587 0.79869 0.77564 0.78569 1.19722 1.20735 1.19073 1.22413 1.01080 0.79816 0.98502 0.92919 0.92467 0.92644 0.90583 0.92831 0.92565 0.92406 0.91564 0.91185 0.89599 0.87834 0.91417 0.90570 0.83141 0.84321 0.91769 0.93936 0.97998 0.97912 0.92668 0.91930 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.99 71.98 0.65 -0.98 16 2 C -0.09 -0.99 2.87 -10.79 -0.03 -1.02 16 3 C -0.15 -1.46 9.19 71.98 0.66 -0.80 16 4 C -0.10 -1.20 4.18 30.59 0.13 -1.07 16 5 C -0.09 -1.37 2.89 -9.40 -0.03 -1.40 16 6 H 0.09 1.39 6.34 -2.39 -0.02 1.37 16 7 C -0.12 -1.73 5.84 31.79 0.19 -1.54 16 8 C 0.09 1.92 6.20 86.73 0.54 2.46 16 9 N -0.62 -17.43 3.33 -811.79 -2.70 -20.13 16 10 C 0.54 19.28 7.10 87.66 0.62 19.90 16 11 O -0.58 -24.40 16.51 -3.02 -0.05 -24.45 16 12 C 0.09 3.10 2.62 44.17 0.12 3.22 16 13 H 0.10 3.55 7.46 -2.39 -0.02 3.53 16 14 N -0.83 -30.41 8.94 -171.79 -1.54 -31.95 16 15 C -0.12 -4.82 4.77 30.59 0.15 -4.67 16 16 C 0.03 1.66 4.74 29.85 0.14 1.80 16 17 C -0.55 -30.23 9.11 25.60 0.23 -29.99 16 18 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 19 C 0.01 0.36 5.46 84.65 0.46 0.83 16 20 N -0.93 -54.40 13.29 21.45 0.28 -54.11 16 21 Si 0.96 43.34 29.54 68.60 2.03 45.37 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 25 C 0.10 2.39 6.38 86.86 0.55 2.95 16 26 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.05 0.63 6.45 -2.38 -0.02 0.62 16 29 H 0.08 0.77 7.61 -2.38 -0.02 0.75 16 30 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 0.84 7.96 -2.39 -0.02 0.82 16 35 H 0.09 1.19 7.91 -2.39 -0.02 1.17 16 36 H 0.10 1.16 8.12 -2.39 -0.02 1.14 16 37 H 0.07 1.65 6.76 -2.38 -0.02 1.64 16 38 H 0.08 1.61 7.84 -2.39 -0.02 1.59 16 39 H 0.35 12.90 7.55 -89.70 -0.68 12.22 16 40 H 0.34 12.82 8.58 -89.69 -0.77 12.05 16 41 H 0.06 2.49 6.66 -2.39 -0.02 2.47 16 42 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 43 H 0.00 0.09 6.87 -2.39 -0.02 0.08 16 44 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 45 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 46 H 0.06 1.60 8.04 -2.39 -0.02 1.58 16 47 H 0.07 1.51 8.04 -2.39 -0.02 1.49 16 Total: -1.00 -66.61 366.60 1.90 -64.71 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: -0.50 Total: 30.89 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: 4.38 Total: -10.32 kcal Atomic # 7 Polarization: -102.24 SS G_CDS: -3.95 Total: -106.19 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.05 Total: -24.45 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -66.61 1.90 -64.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424134061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.017 kcal (2) G-P(sol) polarization free energy of solvation -66.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds