Wall clock time and date at job start Tue Mar 31 2020 05:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47065 * 2 1 4 4 C 1.52999 * 109.47065 * 119.99857 * 2 1 3 5 5 C 1.53001 * 109.47469 * 174.12928 * 4 2 1 6 6 H 1.09005 * 110.91233 * 51.47862 * 5 4 2 7 7 C 1.55158 * 111.00566 * 287.57873 * 5 4 2 8 8 C 1.54319 * 102.94145 * 206.42270 * 7 5 4 9 9 N 1.47016 * 107.27409 * 22.19029 * 8 7 5 10 10 C 1.34776 * 125.64855 * 181.09374 * 9 8 7 11 11 O 1.21281 * 119.99836 * 179.97438 * 10 9 8 12 12 C 1.50694 * 120.00115 * 359.96013 * 10 9 8 13 13 H 1.08997 * 109.47657 * 319.99898 * 12 10 9 14 14 N 1.46902 * 109.47320 * 199.99936 * 12 10 9 15 15 C 1.52997 * 109.47125 * 80.00143 * 12 10 9 16 16 C 1.53006 * 109.47575 * 185.00080 * 15 12 10 17 17 C 1.50697 * 109.47202 * 179.97438 * 16 15 12 18 18 H 1.07994 * 120.00406 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99577 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00162 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00018 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47099 * 59.99911 * 21 19 17 23 23 H 1.48499 * 109.47318 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47250 * 300.00105 * 21 19 17 25 25 C 1.47428 * 108.70250 * 1.05980 * 9 8 7 26 26 H 1.08998 * 109.47290 * 179.14726 * 1 2 3 27 27 H 1.08994 * 109.47272 * 299.15497 * 1 2 3 28 28 H 1.09001 * 109.46972 * 59.15548 * 1 2 3 29 29 H 1.08998 * 109.47258 * 240.00087 * 2 1 3 30 30 H 1.09001 * 109.46931 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47292 * 299.99453 * 3 2 1 32 32 H 1.08998 * 109.47011 * 59.99936 * 3 2 1 33 33 H 1.09005 * 109.46965 * 54.13046 * 4 2 1 34 34 H 1.09002 * 109.47267 * 294.13458 * 4 2 1 35 35 H 1.09001 * 110.72028 * 324.78462 * 7 5 4 36 36 H 1.08996 * 110.72012 * 88.05668 * 7 5 4 37 37 H 1.09006 * 109.87855 * 262.77450 * 8 7 5 38 38 H 1.09002 * 110.01085 * 141.68332 * 8 7 5 39 39 H 1.00904 * 111.00347 * 176.04996 * 14 12 10 40 40 H 1.00901 * 111.00067 * 300.00246 * 14 12 10 41 41 H 1.09004 * 109.47317 * 304.99821 * 15 12 10 42 42 H 1.09002 * 109.47302 * 64.99683 * 15 12 10 43 43 H 1.09004 * 109.46586 * 300.00188 * 16 15 12 44 44 H 1.08995 * 109.46757 * 59.99574 * 16 15 12 45 45 H 0.97001 * 119.99997 * 179.97438 * 20 19 17 46 46 H 1.08997 * 110.36657 * 217.02696 * 25 9 8 47 47 H 1.09003 * 110.36642 * 94.70723 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5628 -0.8503 1.1778 6 1 4.0259 0.1149 0.9726 7 6 3.9826 -1.9047 0.1197 8 6 5.3537 -2.3874 0.6378 9 7 5.4060 -2.0900 2.0766 10 6 6.4489 -2.3399 2.8930 11 8 6.3814 -2.0509 4.0689 12 6 7.6987 -2.9788 2.3447 13 1 7.4264 -3.7550 1.6295 14 7 8.4672 -3.5753 3.4455 15 6 8.5498 -1.9169 1.6455 16 6 9.7555 -2.5852 0.9818 17 6 10.5934 -1.5393 0.2926 18 1 10.2955 -0.5017 0.3243 19 6 11.7397 -1.9072 -0.3794 20 7 12.1022 -3.1708 -0.4185 21 14 12.7779 -0.6108 -1.2344 22 1 13.2502 0.3824 -0.2364 23 1 13.9482 -1.2595 -1.8784 24 1 11.9611 0.0754 -2.2674 25 6 4.1290 -1.4725 2.4785 26 1 -0.3634 -1.0275 -0.0153 27 1 -0.3633 0.5006 0.8974 28 1 -0.3633 0.5269 -0.8823 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.5933 -1.7141 1.3034 34 1 1.7649 -0.1503 2.1361 35 1 3.2691 -2.7283 0.0919 36 1 4.0818 -1.4456 -0.8639 37 1 6.1531 -1.8569 0.1204 38 1 5.4565 -3.4606 0.4770 39 1 9.2772 -4.0657 3.0969 40 1 8.7318 -2.8755 4.1225 41 1 7.9508 -1.4127 0.8871 42 1 8.8960 -1.1883 2.3785 43 1 10.3545 -3.0894 1.7402 44 1 9.4092 -3.3138 0.2488 45 1 12.9084 -3.4297 -0.8916 46 1 4.3008 -0.6981 3.2260 47 1 3.4467 -2.2295 2.8652 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424134071.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:49 Heat of formation + Delta-G solvation = -91.716149 kcal Electronic energy + Delta-G solvation = -22761.234638 eV Core-core repulsion = 19555.423412 eV Total energy + Delta-G solvation = -3205.811226 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.32530 -39.25888 -37.10776 -36.81292 -34.85820 -32.81046 -31.72012 -30.41027 -28.62089 -27.96213 -27.02772 -25.36330 -23.86922 -22.23891 -21.73167 -20.63569 -20.01844 -18.82903 -18.19599 -17.36493 -16.84653 -16.40264 -16.07506 -15.86670 -15.59872 -15.10543 -15.03560 -14.60577 -14.46399 -14.35709 -14.25754 -13.70511 -13.57401 -13.47226 -13.33544 -13.03029 -12.91301 -12.69642 -12.68094 -12.54747 -12.37833 -11.98125 -11.82576 -11.76130 -11.71772 -11.38779 -11.33511 -11.25613 -11.21454 -10.76355 -10.56493 -9.76452 -9.61811 -8.22048 -6.32875 1.39501 1.41261 1.49150 1.54545 1.92505 2.39478 3.11373 3.34312 3.64415 3.69969 3.71550 3.83565 4.05941 4.14453 4.19821 4.21387 4.25501 4.36624 4.44955 4.60164 4.61533 4.65750 4.75224 4.83478 4.86665 4.89823 4.93126 4.99616 5.04860 5.07283 5.12224 5.14507 5.21459 5.32760 5.35527 5.44145 5.46311 5.57410 5.60145 5.62759 5.78710 6.02600 6.19677 6.43227 6.44847 6.81767 7.10337 7.36254 8.88593 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017119 B = 0.003606 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.213565 B = 7763.878251 C = 8891.341820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.152 4.152 4 C -0.096 4.096 5 C -0.093 4.093 6 H 0.083 0.917 7 C -0.115 4.115 8 C 0.086 3.914 9 N -0.618 5.618 10 C 0.536 3.464 11 O -0.577 6.577 12 C 0.086 3.914 13 H 0.105 0.895 14 N -0.830 5.830 15 C -0.118 4.118 16 C 0.034 3.966 17 C -0.547 4.547 18 H 0.054 0.946 19 C 0.007 3.993 20 N -0.926 5.926 21 Si 0.959 3.041 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.266 1.266 25 C 0.105 3.895 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.353 0.647 40 H 0.344 0.656 41 H 0.064 0.936 42 H 0.042 0.958 43 H 0.002 0.998 44 H 0.002 0.998 45 H 0.265 0.735 46 H 0.059 0.941 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.889 4.492 -1.701 23.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.209 4.209 4 C -0.134 4.134 5 C -0.112 4.112 6 H 0.101 0.899 7 C -0.152 4.152 8 C -0.036 4.036 9 N -0.352 5.352 10 C 0.325 3.675 11 O -0.456 6.456 12 C -0.029 4.029 13 H 0.122 0.878 14 N -0.362 5.362 15 C -0.158 4.158 16 C -0.004 4.004 17 C -0.585 4.585 18 H 0.072 0.928 19 C -0.192 4.192 20 N -0.566 5.566 21 Si 0.784 3.216 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.191 1.191 25 C -0.017 4.017 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.169 0.831 40 H 0.157 0.843 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.020 0.980 44 H 0.021 0.979 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -23.389 4.064 -0.951 23.758 hybrid contribution 1.853 1.066 -0.582 2.216 sum -21.536 5.130 -1.533 22.191 Atomic orbital electron populations 1.21828 0.94742 1.02002 1.01814 1.21086 0.95945 0.96003 0.98193 1.21921 1.00941 0.96330 1.01740 1.21540 0.91966 1.01458 0.98468 1.22417 0.97058 0.98812 0.92906 0.89911 1.22729 0.94123 0.99050 0.99334 1.22376 1.00250 1.01579 0.79394 1.48514 1.15018 1.61090 1.10532 1.20471 0.84083 0.77711 0.85193 1.90608 1.82698 1.54454 1.17844 1.21348 0.91323 0.96885 0.93369 0.87766 1.58759 1.29465 1.32881 1.15078 1.22108 0.97350 0.97325 0.99011 1.18934 0.91908 0.95115 0.94404 1.21568 1.08831 0.94503 1.33565 0.92770 1.25863 0.98855 0.97415 0.97061 1.70056 1.25415 1.17493 1.43626 0.85592 0.78125 0.79030 0.78862 1.19710 1.20737 1.19073 1.22406 0.84002 0.97023 0.98245 0.92269 0.92833 0.92521 0.90584 0.93003 0.92527 0.92897 0.90673 0.91627 0.88806 0.88383 0.91523 0.90455 0.83139 0.84322 0.91777 0.93956 0.98004 0.97924 0.92666 0.92290 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.19 71.98 0.66 -0.78 16 2 C -0.09 -1.04 2.87 -10.79 -0.03 -1.07 16 3 C -0.15 -1.89 8.99 71.98 0.65 -1.24 16 4 C -0.10 -1.17 4.18 30.59 0.13 -1.04 16 5 C -0.09 -1.50 2.89 -9.40 -0.03 -1.53 16 6 H 0.08 1.47 6.36 -2.38 -0.02 1.45 16 7 C -0.11 -1.71 5.80 31.78 0.18 -1.53 16 8 C 0.09 1.91 6.18 86.73 0.54 2.45 16 9 N -0.62 -17.42 3.33 -811.82 -2.70 -20.12 16 10 C 0.54 19.28 7.10 87.66 0.62 19.90 16 11 O -0.58 -24.40 16.51 -3.03 -0.05 -24.45 16 12 C 0.09 3.10 2.62 44.17 0.12 3.22 16 13 H 0.10 3.55 7.52 -2.39 -0.02 3.53 16 14 N -0.83 -30.43 8.94 -171.81 -1.54 -31.97 16 15 C -0.12 -4.81 4.77 30.60 0.15 -4.66 16 16 C 0.03 1.67 4.74 29.85 0.14 1.81 16 17 C -0.55 -30.23 9.11 25.60 0.23 -30.00 16 18 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 19 C 0.01 0.38 5.46 84.65 0.46 0.84 16 20 N -0.93 -54.38 13.29 21.45 0.28 -54.10 16 21 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 25 C 0.11 2.42 6.38 86.85 0.55 2.97 16 26 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.08 0.81 7.56 -2.39 -0.02 0.79 16 30 H 0.05 0.72 6.46 -2.39 -0.02 0.70 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.81 7.98 -2.38 -0.02 0.79 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.09 1.12 7.92 -2.39 -0.02 1.11 16 36 H 0.10 1.22 8.11 -2.39 -0.02 1.20 16 37 H 0.07 1.64 6.68 -2.38 -0.02 1.62 16 38 H 0.08 1.62 7.93 -2.39 -0.02 1.60 16 39 H 0.35 12.91 7.55 -89.69 -0.68 12.23 16 40 H 0.34 12.83 8.58 -89.69 -0.77 12.06 16 41 H 0.06 2.49 6.61 -2.38 -0.02 2.47 16 42 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.00 0.09 6.87 -2.38 -0.02 0.07 16 44 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 45 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 46 H 0.06 1.54 8.04 -2.39 -0.02 1.52 16 47 H 0.07 1.56 8.04 -2.39 -0.02 1.55 16 Total: -1.00 -66.62 366.57 1.90 -64.73 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: -0.50 Total: 31.23 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: 4.37 Total: -10.67 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -3.95 Total: -106.18 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.05 Total: -24.45 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -66.62 1.90 -64.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424134071.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.990 kcal (2) G-P(sol) polarization free energy of solvation -66.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds