Wall clock time and date at job start Tue Mar 31 2020 05:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46822 * 2 1 4 4 C 1.52994 * 109.47109 * 119.99908 * 2 1 3 5 5 C 1.53002 * 109.47312 * 175.00287 * 4 2 1 6 6 H 1.09000 * 110.88682 * 57.42329 * 5 4 2 7 7 C 1.55163 * 111.00024 * 293.54870 * 5 4 2 8 8 C 1.54326 * 102.94100 * 206.38367 * 7 5 4 9 9 N 1.47026 * 107.27327 * 22.19007 * 8 7 5 10 10 C 1.34771 * 125.65155 * 181.01834 * 9 8 7 11 11 O 1.21281 * 119.99815 * 180.02562 * 10 9 8 12 12 C 1.50703 * 120.00115 * 0.03321 * 10 9 8 13 13 H 1.09002 * 109.46640 * 39.99366 * 12 10 9 14 14 N 1.46898 * 109.47349 * 159.99272 * 12 10 9 15 15 C 1.52996 * 109.46784 * 279.99960 * 12 10 9 16 16 C 1.53002 * 109.46737 * 175.00007 * 15 12 10 17 17 C 1.50706 * 109.47153 * 179.97438 * 16 15 12 18 18 H 1.07998 * 119.99501 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00436 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00481 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99886 * 359.72901 * 19 17 16 22 22 H 1.48502 * 109.46964 * 270.27509 * 21 19 17 23 23 H 1.48505 * 109.47036 * 30.26897 * 21 19 17 24 24 H 1.48490 * 109.47395 * 150.27411 * 21 19 17 25 25 C 1.47425 * 108.69694 * 1.29105 * 9 8 7 26 26 H 1.08997 * 109.47256 * 299.99784 * 1 2 3 27 27 H 1.09003 * 109.47271 * 60.00094 * 1 2 3 28 28 H 1.09000 * 109.46770 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47256 * 240.00216 * 2 1 3 30 30 H 1.09002 * 109.46897 * 60.00545 * 3 2 1 31 31 H 1.09008 * 109.47213 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47258 * 300.00024 * 3 2 1 33 33 H 1.09006 * 109.47173 * 55.00611 * 4 2 1 34 34 H 1.09000 * 109.47631 * 295.00393 * 4 2 1 35 35 H 1.09002 * 110.71927 * 88.02307 * 7 5 4 36 36 H 1.08995 * 110.71984 * 324.74272 * 7 5 4 37 37 H 1.09007 * 109.88480 * 262.78001 * 8 7 5 38 38 H 1.08995 * 110.01341 * 141.68132 * 8 7 5 39 39 H 1.00900 * 110.99763 * 60.00120 * 14 12 10 40 40 H 1.00894 * 111.00147 * 183.94800 * 14 12 10 41 41 H 1.08991 * 109.47455 * 54.99923 * 15 12 10 42 42 H 1.09001 * 109.46830 * 294.99368 * 15 12 10 43 43 H 1.09004 * 109.47503 * 59.99893 * 16 15 12 44 44 H 1.09001 * 109.46939 * 299.99294 * 16 15 12 45 45 H 0.96999 * 120.00235 * 179.72806 * 20 19 17 46 46 H 1.08996 * 110.36887 * 94.48393 * 25 9 8 47 47 H 1.09005 * 110.36384 * 216.80246 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1880 6 1 4.0220 0.1542 1.0957 7 6 4.0093 -1.7611 0.0283 8 6 5.3773 -2.2868 0.5119 9 7 5.4063 -2.1470 1.9752 10 6 6.4390 -2.4774 2.7756 11 8 6.3517 -2.3189 3.9748 12 6 7.7024 -3.0438 2.1804 13 1 7.9355 -2.5177 1.2546 14 7 8.8097 -2.8759 3.1311 15 6 7.5046 -4.5319 1.8854 16 6 8.7406 -5.0782 1.1678 17 6 8.5461 -6.5443 0.8777 18 1 7.6324 -7.0370 1.1757 19 6 9.5343 -7.2563 0.2319 20 7 9.3648 -8.5358 -0.0208 21 14 11.1115 -6.4022 -0.2903 22 1 10.9474 -5.8547 -1.6610 23 1 11.4101 -5.2945 0.6526 24 1 12.2305 -7.3782 -0.2779 25 6 4.1160 -1.5916 2.4225 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 0.8901 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6054 -1.7198 1.2951 34 1 1.7516 -0.1584 2.1370 35 1 4.1184 -1.1972 -0.8981 36 1 3.3039 -2.5822 -0.0994 37 1 6.1793 -1.6973 0.0673 38 1 5.4922 -3.3354 0.2374 39 1 8.6175 -3.3548 3.9981 40 1 9.6810 -3.1893 2.7303 41 1 6.6284 -4.6632 1.2506 42 1 7.3596 -5.0717 2.8212 43 1 9.6169 -4.9470 1.8026 44 1 8.8856 -4.5385 0.2320 45 1 10.0585 -9.0358 -0.4787 46 1 3.4371 -2.3940 2.7109 47 1 4.2671 -0.9040 3.2548 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424134077.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:54 Heat of formation + Delta-G solvation = -68.469017 kcal Electronic energy + Delta-G solvation = -22759.637391 eV Core-core repulsion = 19554.834236 eV Total energy + Delta-G solvation = -3204.803154 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.18245 -38.29154 -36.09091 -35.56248 -32.80814 -31.90004 -30.31463 -29.56344 -27.54923 -27.41954 -25.84064 -23.88579 -22.61468 -21.18448 -20.27205 -19.89564 -18.85484 -17.45701 -16.73176 -16.55229 -15.35695 -15.21890 -14.96112 -14.41781 -14.25558 -14.09314 -13.90353 -13.79534 -13.60538 -13.13395 -12.82016 -12.69494 -12.65918 -12.56875 -12.31744 -12.02055 -11.82661 -11.73529 -11.40037 -11.32898 -11.15820 -10.96880 -10.79933 -10.67126 -10.59318 -10.33874 -10.05538 -9.88915 -9.37675 -9.31576 -8.62690 -8.56042 -8.29545 -6.12085 -4.11631 2.89264 3.05046 3.24461 3.33017 3.34477 4.16350 4.37276 4.41007 4.47928 4.65264 4.69773 4.87886 4.96504 5.06593 5.15095 5.16086 5.20966 5.24963 5.31813 5.40535 5.45515 5.47853 5.56948 5.58033 5.61994 5.64387 5.69038 5.73802 5.77121 5.84336 5.89869 5.97196 6.09370 6.15414 6.18189 6.29441 6.40415 6.66012 7.09653 7.21399 7.35634 7.64521 7.67358 7.79492 8.40049 8.44569 8.91897 9.49202 11.01152 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022283 B = 0.003387 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.273528 B = 8265.778609 C = 8895.212505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.150 4.150 4 C -0.104 4.104 5 C -0.102 4.102 6 H 0.086 0.914 7 C -0.126 4.126 8 C 0.095 3.905 9 N -0.621 5.621 10 C 0.541 3.459 11 O -0.538 6.538 12 C 0.076 3.924 13 H 0.095 0.905 14 N -0.831 5.831 15 C -0.129 4.129 16 C -0.010 4.010 17 C -0.523 4.523 18 H 0.071 0.929 19 C 0.067 3.933 20 N -0.901 5.901 21 Si 0.881 3.119 22 H -0.277 1.277 23 H -0.265 1.265 24 H -0.287 1.287 25 C 0.111 3.889 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.348 0.652 40 H 0.350 0.650 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.016 0.984 44 H 0.013 0.987 45 H 0.264 0.736 46 H 0.065 0.935 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.596 18.538 -1.627 23.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.207 4.207 4 C -0.142 4.142 5 C -0.121 4.121 6 H 0.105 0.895 7 C -0.163 4.163 8 C -0.028 4.028 9 N -0.357 5.357 10 C 0.330 3.670 11 O -0.414 6.414 12 C -0.039 4.039 13 H 0.113 0.887 14 N -0.363 5.363 15 C -0.169 4.169 16 C -0.047 4.047 17 C -0.561 4.561 18 H 0.089 0.911 19 C -0.134 4.134 20 N -0.540 5.540 21 Si 0.708 3.292 22 H -0.202 1.202 23 H -0.190 1.190 24 H -0.213 1.213 25 C -0.012 4.012 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.161 0.839 40 H 0.165 0.835 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.032 0.968 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.625 19.219 -1.030 24.173 hybrid contribution 0.932 -0.852 -0.552 1.378 sum -13.693 18.367 -1.582 22.964 Atomic orbital electron populations 1.21846 0.95330 1.01735 1.01637 1.21113 0.95538 0.96365 0.98518 1.21900 1.01281 0.95958 1.01568 1.21579 0.93564 1.00958 0.98061 1.22491 0.95946 0.99099 0.94604 0.89531 1.22717 0.95956 0.99348 0.98322 1.22147 0.98176 1.02143 0.80342 1.48438 1.14937 1.64700 1.07606 1.20486 0.83745 0.76548 0.86172 1.90640 1.81911 1.54001 1.14867 1.21477 0.89322 0.97129 0.96016 0.88700 1.58737 1.04181 1.66120 1.07279 1.22192 1.01419 0.91777 1.01479 1.19569 0.92906 0.97282 0.94946 1.21065 1.04511 0.92351 1.38195 0.91083 1.25040 0.98394 0.94708 0.95288 1.69910 1.34544 1.07645 1.41859 0.86763 0.83301 0.79691 0.79415 1.20245 1.18967 1.21335 1.22255 0.84661 0.97178 0.97090 0.92784 0.92816 0.92670 0.90896 0.92791 0.92383 0.92927 0.91462 0.91601 0.90039 0.90316 0.91313 0.90406 0.83861 0.83483 0.91912 0.92092 0.96602 0.96825 0.92625 0.91638 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.19 37.16 0.34 -0.54 16 2 C -0.10 -0.61 2.84 -90.62 -0.26 -0.87 16 3 C -0.15 -0.93 8.97 37.16 0.33 -0.60 16 4 C -0.10 -0.73 4.20 -26.73 -0.11 -0.84 16 5 C -0.10 -0.86 2.85 -88.35 -0.25 -1.11 16 6 H 0.09 0.73 6.55 -51.93 -0.34 0.39 16 7 C -0.13 -1.06 5.54 -24.89 -0.14 -1.20 16 8 C 0.09 1.07 6.19 -3.06 -0.02 1.06 16 9 N -0.62 -8.65 3.32 -170.38 -0.57 -9.22 16 10 C 0.54 9.36 7.10 -10.99 -0.08 9.28 16 11 O -0.54 -10.93 16.50 5.56 0.09 -10.84 16 12 C 0.08 1.28 2.62 -68.87 -0.18 1.10 16 13 H 0.10 1.49 7.46 -51.93 -0.39 1.11 16 14 N -0.83 -14.05 8.94 -5.65 -0.05 -14.10 16 15 C -0.13 -2.50 4.77 -26.73 -0.13 -2.62 16 16 C -0.01 -0.22 3.81 -27.88 -0.11 -0.32 16 17 C -0.52 -14.55 9.66 -34.44 -0.33 -14.88 16 18 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 19 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 20 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 21 Si 0.88 21.12 27.46 -169.99 -4.67 16.45 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.02 6.55 56.52 0.37 -5.65 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 25 C 0.11 1.29 6.38 -2.41 -0.02 1.27 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.47 7.29 -51.93 -0.38 0.09 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.37 6.54 -51.92 -0.34 0.03 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.48 8.11 -51.93 -0.42 0.06 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.57 8.04 -51.93 -0.42 0.15 16 36 H 0.08 0.65 8.01 -51.93 -0.42 0.23 16 37 H 0.07 0.73 7.85 -51.93 -0.41 0.32 16 38 H 0.08 0.96 6.75 -51.93 -0.35 0.61 16 39 H 0.35 5.99 8.58 -39.29 -0.34 5.65 16 40 H 0.35 5.69 7.55 -39.30 -0.30 5.39 16 41 H 0.06 1.19 6.65 -51.93 -0.35 0.84 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.02 0.35 5.94 -51.93 -0.31 0.05 16 44 H 0.01 0.30 7.56 -51.93 -0.39 -0.09 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.07 0.76 8.04 -51.93 -0.42 0.34 16 47 H 0.07 0.94 8.03 -51.93 -0.42 0.52 16 LS Contribution 362.78 15.07 5.47 5.47 Total: -1.00 -32.13 362.78 -8.51 -40.64 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -8.52 Total: 6.69 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -1.04 Total: -8.46 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.16 Total: -49.96 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.13 -8.51 -40.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424134077.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.829 kcal (2) G-P(sol) polarization free energy of solvation -32.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds