Wall clock time and date at job start Tue Mar 31 2020 05:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46822 * 2 1 4 4 C 1.52994 * 109.47109 * 119.99908 * 2 1 3 5 5 C 1.53002 * 109.47312 * 175.00287 * 4 2 1 6 6 H 1.09000 * 110.88682 * 57.42329 * 5 4 2 7 7 C 1.55163 * 111.00024 * 293.54870 * 5 4 2 8 8 C 1.54326 * 102.94100 * 206.38367 * 7 5 4 9 9 N 1.47026 * 107.27327 * 22.19007 * 8 7 5 10 10 C 1.34771 * 125.65155 * 181.01834 * 9 8 7 11 11 O 1.21281 * 119.99815 * 180.02562 * 10 9 8 12 12 C 1.50703 * 120.00115 * 0.03321 * 10 9 8 13 13 H 1.09002 * 109.46640 * 39.99366 * 12 10 9 14 14 N 1.46898 * 109.47349 * 159.99272 * 12 10 9 15 15 C 1.52996 * 109.46784 * 279.99960 * 12 10 9 16 16 C 1.53002 * 109.46737 * 175.00007 * 15 12 10 17 17 C 1.50706 * 109.47153 * 179.97438 * 16 15 12 18 18 H 1.07998 * 119.99501 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00436 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00481 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99886 * 359.72901 * 19 17 16 22 22 H 1.48502 * 109.46964 * 270.27509 * 21 19 17 23 23 H 1.48505 * 109.47036 * 30.26897 * 21 19 17 24 24 H 1.48490 * 109.47395 * 150.27411 * 21 19 17 25 25 C 1.47425 * 108.69694 * 1.29105 * 9 8 7 26 26 H 1.08997 * 109.47256 * 299.99784 * 1 2 3 27 27 H 1.09003 * 109.47271 * 60.00094 * 1 2 3 28 28 H 1.09000 * 109.46770 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47256 * 240.00216 * 2 1 3 30 30 H 1.09002 * 109.46897 * 60.00545 * 3 2 1 31 31 H 1.09008 * 109.47213 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47258 * 300.00024 * 3 2 1 33 33 H 1.09006 * 109.47173 * 55.00611 * 4 2 1 34 34 H 1.09000 * 109.47631 * 295.00393 * 4 2 1 35 35 H 1.09002 * 110.71927 * 88.02307 * 7 5 4 36 36 H 1.08995 * 110.71984 * 324.74272 * 7 5 4 37 37 H 1.09007 * 109.88480 * 262.78001 * 8 7 5 38 38 H 1.08995 * 110.01341 * 141.68132 * 8 7 5 39 39 H 1.00900 * 110.99763 * 60.00120 * 14 12 10 40 40 H 1.00894 * 111.00147 * 183.94800 * 14 12 10 41 41 H 1.08991 * 109.47455 * 54.99923 * 15 12 10 42 42 H 1.09001 * 109.46830 * 294.99368 * 15 12 10 43 43 H 1.09004 * 109.47503 * 59.99893 * 16 15 12 44 44 H 1.09001 * 109.46939 * 299.99294 * 16 15 12 45 45 H 0.96999 * 120.00235 * 179.72806 * 20 19 17 46 46 H 1.08996 * 110.36887 * 94.48393 * 25 9 8 47 47 H 1.09005 * 110.36384 * 216.80246 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1880 6 1 4.0220 0.1542 1.0957 7 6 4.0093 -1.7611 0.0283 8 6 5.3773 -2.2868 0.5119 9 7 5.4063 -2.1470 1.9752 10 6 6.4390 -2.4774 2.7756 11 8 6.3517 -2.3189 3.9748 12 6 7.7024 -3.0438 2.1804 13 1 7.9355 -2.5177 1.2546 14 7 8.8097 -2.8759 3.1311 15 6 7.5046 -4.5319 1.8854 16 6 8.7406 -5.0782 1.1678 17 6 8.5461 -6.5443 0.8777 18 1 7.6324 -7.0370 1.1757 19 6 9.5343 -7.2563 0.2319 20 7 9.3648 -8.5358 -0.0208 21 14 11.1115 -6.4022 -0.2903 22 1 10.9474 -5.8547 -1.6610 23 1 11.4101 -5.2945 0.6526 24 1 12.2305 -7.3782 -0.2779 25 6 4.1160 -1.5916 2.4225 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 0.8901 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6054 -1.7198 1.2951 34 1 1.7516 -0.1584 2.1370 35 1 4.1184 -1.1972 -0.8981 36 1 3.3039 -2.5822 -0.0994 37 1 6.1793 -1.6973 0.0673 38 1 5.4922 -3.3354 0.2374 39 1 8.6175 -3.3548 3.9981 40 1 9.6810 -3.1893 2.7303 41 1 6.6284 -4.6632 1.2506 42 1 7.3596 -5.0717 2.8212 43 1 9.6169 -4.9470 1.8026 44 1 8.8856 -4.5385 0.2320 45 1 10.0585 -9.0358 -0.4787 46 1 3.4371 -2.3940 2.7109 47 1 4.2671 -0.9040 3.2548 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424134077.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:53 Heat of formation + Delta-G solvation = -89.641942 kcal Electronic energy + Delta-G solvation = -22760.555518 eV Core-core repulsion = 19554.834236 eV Total energy + Delta-G solvation = -3205.721281 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.32746 -39.27531 -37.16229 -36.80566 -34.83032 -32.79606 -32.11204 -30.41862 -28.79745 -27.95173 -27.08562 -25.23113 -23.78018 -22.17870 -21.69975 -20.64771 -19.94974 -19.03508 -18.46286 -17.49541 -16.63866 -16.22708 -16.13901 -15.91565 -15.53671 -15.32068 -15.01816 -14.72179 -14.53245 -14.44289 -14.28042 -13.93211 -13.57304 -13.47720 -13.33790 -13.04597 -12.98771 -12.72599 -12.67309 -12.38028 -12.11692 -11.96233 -11.87347 -11.81211 -11.66038 -11.43896 -11.39112 -11.27238 -11.19896 -10.80046 -10.77923 -9.76290 -9.63144 -8.30610 -6.36512 1.37714 1.40199 1.51263 1.54484 1.92732 2.35812 3.04827 3.33583 3.63629 3.67517 3.71232 3.83862 4.02711 4.13230 4.14663 4.21593 4.25896 4.36198 4.44786 4.54087 4.60906 4.63771 4.67465 4.80946 4.86367 4.89356 4.91501 4.94435 5.00047 5.05676 5.12717 5.14687 5.20782 5.31446 5.34071 5.35801 5.43415 5.45656 5.56771 5.60867 5.60985 6.01587 6.23901 6.43913 6.46411 6.71578 7.10472 7.28427 8.86222 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022283 B = 0.003387 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.273528 B = 8265.778609 C = 8895.212505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.150 4.150 4 C -0.099 4.099 5 C -0.088 4.088 6 H 0.092 0.908 7 C -0.117 4.117 8 C 0.086 3.914 9 N -0.618 5.618 10 C 0.534 3.466 11 O -0.577 6.577 12 C 0.086 3.914 13 H 0.115 0.885 14 N -0.830 5.830 15 C -0.116 4.116 16 C -0.003 4.003 17 C -0.535 4.535 18 H 0.025 0.975 19 C 0.003 3.997 20 N -0.953 5.953 21 Si 0.954 3.046 22 H -0.263 1.263 23 H -0.239 1.239 24 H -0.289 1.289 25 C 0.103 3.897 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.345 0.655 40 H 0.355 0.645 41 H 0.062 0.938 42 H 0.039 0.961 43 H 0.025 0.975 44 H 0.031 0.969 45 H 0.266 0.734 46 H 0.064 0.936 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.250 21.021 -3.080 25.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.207 4.207 4 C -0.137 4.137 5 C -0.107 4.107 6 H 0.110 0.890 7 C -0.155 4.155 8 C -0.036 4.036 9 N -0.352 5.352 10 C 0.323 3.677 11 O -0.457 6.457 12 C -0.029 4.029 13 H 0.133 0.867 14 N -0.362 5.362 15 C -0.156 4.156 16 C -0.041 4.041 17 C -0.573 4.573 18 H 0.044 0.956 19 C -0.193 4.193 20 N -0.593 5.593 21 Si 0.777 3.223 22 H -0.188 1.188 23 H -0.162 1.162 24 H -0.215 1.215 25 C -0.019 4.019 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.123 0.877 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.158 0.842 40 H 0.171 0.829 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.043 0.957 44 H 0.049 0.951 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.315 21.729 -2.509 26.142 hybrid contribution 0.702 -1.689 -0.081 1.831 sum -13.613 20.040 -2.590 24.364 Atomic orbital electron populations 1.21843 0.95063 1.01780 1.01869 1.21089 0.95743 0.96356 0.98030 1.21900 1.01206 0.95835 1.01755 1.21549 0.92370 1.01140 0.98673 1.22417 0.96756 0.98777 0.92704 0.88979 1.22734 0.94168 0.99583 0.99009 1.22395 1.00571 1.02001 0.78663 1.48528 1.14756 1.63153 1.08746 1.20526 0.84527 0.76715 0.85919 1.90617 1.82706 1.55944 1.16398 1.21381 0.89549 0.95174 0.96834 0.86684 1.58752 1.04361 1.65944 1.07155 1.21996 1.00134 0.93484 1.00025 1.19482 0.94520 0.93982 0.96105 1.21410 1.02928 0.95132 1.37825 0.95626 1.26073 1.02662 0.95318 0.95293 1.70078 1.36171 1.09742 1.43316 0.85606 0.77752 0.79012 0.79972 1.18775 1.16222 1.21523 1.22449 0.83750 0.97248 0.98437 0.92807 0.92377 0.92737 0.90556 0.92935 0.92451 0.92485 0.91534 0.91519 0.87685 0.89938 0.89935 0.91488 0.84201 0.82935 0.91926 0.94205 0.95679 0.95088 0.92472 0.91802 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.19 71.98 0.66 -0.82 16 2 C -0.09 -0.97 2.84 -10.80 -0.03 -1.00 16 3 C -0.15 -1.52 8.97 71.98 0.65 -0.87 16 4 C -0.10 -1.20 4.20 30.59 0.13 -1.07 16 5 C -0.09 -1.29 2.85 -9.32 -0.03 -1.32 16 6 H 0.09 1.31 6.55 -2.39 -0.02 1.30 16 7 C -0.12 -1.67 5.54 31.79 0.18 -1.49 16 8 C 0.09 1.77 6.19 86.73 0.54 2.30 16 9 N -0.62 -16.60 3.32 -811.35 -2.70 -19.29 16 10 C 0.53 18.17 7.10 87.66 0.62 18.79 16 11 O -0.58 -23.59 16.50 -3.03 -0.05 -23.64 16 12 C 0.09 2.78 2.62 44.17 0.12 2.90 16 13 H 0.12 3.28 7.46 -2.39 -0.02 3.27 16 14 N -0.83 -26.86 8.94 -171.80 -1.54 -28.39 16 15 C -0.12 -4.46 4.77 30.59 0.15 -4.32 16 16 C 0.00 -0.15 3.81 29.85 0.11 -0.04 16 17 C -0.54 -30.19 9.66 25.60 0.25 -29.94 16 18 H 0.03 1.62 7.99 -2.91 -0.02 1.60 16 19 C 0.00 0.19 5.47 84.65 0.46 0.65 16 20 N -0.95 -59.27 13.96 21.45 0.30 -58.97 16 21 Si 0.95 42.49 27.46 68.60 1.88 44.37 16 22 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 23 H -0.24 -9.58 6.55 99.48 0.65 -8.93 16 24 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 25 C 0.10 2.32 6.38 86.93 0.55 2.87 16 26 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.08 0.76 7.29 -2.39 -0.02 0.74 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.59 6.54 -2.38 -0.02 0.57 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.07 0.83 8.11 -2.38 -0.02 0.81 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 35 H 0.10 1.07 8.04 -2.39 -0.02 1.05 16 36 H 0.08 1.15 8.01 -2.39 -0.02 1.13 16 37 H 0.08 1.50 7.85 -2.38 -0.02 1.48 16 38 H 0.07 1.55 6.75 -2.39 -0.02 1.54 16 39 H 0.34 11.69 8.58 -89.69 -0.77 10.92 16 40 H 0.36 10.71 7.55 -89.70 -0.68 10.03 16 41 H 0.06 2.37 6.65 -2.39 -0.02 2.35 16 42 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.02 1.06 5.94 -2.39 -0.01 1.05 16 44 H 0.03 1.27 7.56 -2.39 -0.02 1.25 16 45 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 46 H 0.06 1.45 8.04 -2.39 -0.02 1.43 16 47 H 0.06 1.57 8.03 -2.38 -0.02 1.55 16 Total: -1.00 -70.70 362.78 1.70 -69.00 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: -0.56 Total: 30.26 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 4.35 Total: -13.34 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -3.93 Total: -106.66 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.05 Total: -23.64 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.88 Total: 44.37 kcal Total: -70.70 1.70 -69.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424134077.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.640 kcal (2) G-P(sol) polarization free energy of solvation -70.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds