Wall clock time and date at job start Tue Mar 31 2020 05:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47151 * 2 1 4 4 C 1.52999 * 109.47327 * 185.07919 * 3 2 1 5 5 H 1.09003 * 109.70271 * 61.30516 * 4 3 2 6 6 C 1.52762 * 109.51027 * 301.19168 * 4 3 2 7 7 C 1.53037 * 109.38681 * 185.70594 * 6 4 3 8 8 C 1.53044 * 109.53947 * 61.23967 * 7 6 4 9 9 C 1.53194 * 109.30730 * 298.63636 * 8 7 6 10 10 N 1.46924 * 109.58849 * 181.66557 * 4 3 2 11 11 C 1.34779 * 120.63163 * 353.41609 * 10 4 3 12 12 O 1.21280 * 119.99527 * 354.19267 * 11 10 4 13 13 C 1.50696 * 120.00146 * 174.19391 * 11 10 4 14 14 H 1.09005 * 109.47438 * 319.99917 * 13 11 10 15 15 N 1.46903 * 109.47128 * 200.00180 * 13 11 10 16 16 C 1.52998 * 109.47096 * 79.99999 * 13 11 10 17 17 C 1.53008 * 109.46915 * 185.00108 * 16 13 11 18 18 C 1.50698 * 109.46728 * 179.97438 * 17 16 13 19 19 H 1.08003 * 120.00737 * 359.97438 * 18 17 16 20 20 C 1.37880 * 119.99562 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00223 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99653 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47120 * 90.00400 * 22 20 18 24 24 H 1.48506 * 109.46845 * 210.00355 * 22 20 18 25 25 H 1.48500 * 109.47518 * 329.99734 * 22 20 18 26 26 H 1.08998 * 109.47089 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46982 * 299.99546 * 1 2 3 28 28 H 1.09002 * 109.47254 * 59.99513 * 1 2 3 29 29 H 1.09002 * 109.46982 * 240.00454 * 2 1 3 30 30 H 1.09002 * 109.47254 * 120.00486 * 2 1 3 31 31 H 1.09003 * 109.46838 * 65.08263 * 3 2 1 32 32 H 1.09001 * 109.47930 * 305.08163 * 3 2 1 33 33 H 1.09000 * 109.56745 * 65.66195 * 6 4 3 34 34 H 1.09009 * 109.35858 * 305.61575 * 6 4 3 35 35 H 1.09000 * 109.45898 * 301.21612 * 7 6 4 36 36 H 1.09003 * 109.46238 * 181.25822 * 7 6 4 37 37 H 1.08999 * 109.49732 * 178.68559 * 8 7 6 38 38 H 1.09004 * 109.49718 * 58.58548 * 8 7 6 39 39 H 1.09000 * 109.59115 * 294.84424 * 9 8 7 40 40 H 1.09005 * 109.70158 * 174.49473 * 9 8 7 41 41 H 1.00904 * 110.99707 * 299.99714 * 15 13 11 42 42 H 1.00895 * 110.99748 * 63.95167 * 15 13 11 43 43 H 1.08998 * 109.47430 * 304.99804 * 16 13 11 44 44 H 1.08992 * 109.47294 * 65.00040 * 16 13 11 45 45 H 1.08999 * 109.47264 * 299.99764 * 17 16 13 46 46 H 1.08996 * 109.46972 * 60.00318 * 17 16 13 47 47 H 0.97004 * 119.99890 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5647 1.4444 -0.1277 5 1 3.8552 0.9789 -1.0696 6 6 4.1750 0.6633 1.0346 7 6 5.6996 0.7862 0.9843 8 6 6.0995 2.2567 1.1256 9 6 5.5111 3.0560 -0.0415 10 7 4.0606 2.8268 -0.0879 11 6 3.2010 3.8650 -0.0884 12 8 2.0125 3.6681 -0.2280 13 6 3.7168 5.2704 0.0844 14 1 4.5088 5.2773 0.8333 15 7 2.6203 6.1439 0.5234 16 6 4.2708 5.7778 -1.2484 17 6 4.9066 7.1546 -1.0453 18 6 5.4528 7.6541 -2.3580 19 1 5.3566 7.0500 -3.2481 20 6 6.0755 8.8826 -2.4228 21 7 6.1932 9.6182 -1.3390 22 14 6.7519 9.5021 -4.0501 23 1 5.7017 10.2749 -4.7607 24 1 7.9249 10.3773 -3.7976 25 1 7.1673 8.3469 -4.8856 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.7529 1.9293 0.9320 32 1 1.6044 1.9820 -0.8409 33 1 3.8919 -0.3865 0.9576 34 1 3.8080 1.0713 1.9765 35 1 6.0638 0.4007 0.0321 36 1 6.1374 0.2109 1.8001 37 1 7.1861 2.3411 1.1131 38 1 5.7143 2.6498 2.0665 39 1 5.9635 2.7247 -0.9762 40 1 5.7089 4.1180 0.1038 41 1 1.8730 6.1546 -0.1546 42 1 2.2801 5.8680 1.4323 43 1 5.0232 5.0812 -1.6181 44 1 3.4602 5.8552 -1.9729 45 1 4.1543 7.8514 -0.6758 46 1 5.7173 7.0772 -0.3209 47 1 6.6316 10.4823 -1.3845 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424181955.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:59 Heat of formation + Delta-G solvation = -56.177814 kcal Electronic energy + Delta-G solvation = -23556.559423 eV Core-core repulsion = 20352.289255 eV Total energy + Delta-G solvation = -3204.270168 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.65789 -37.67678 -35.77568 -34.67624 -32.86941 -32.76512 -31.11973 -30.07384 -27.30562 -26.30208 -24.69832 -23.83502 -22.48505 -21.07344 -20.87986 -20.01452 -18.83614 -16.90933 -16.32914 -16.05940 -15.62409 -15.19293 -14.76452 -14.56971 -14.45998 -14.12647 -14.03540 -13.75941 -13.45086 -13.17635 -12.90139 -12.57067 -12.30745 -11.99717 -11.99154 -11.65392 -11.52804 -11.39729 -11.17914 -11.08548 -10.90272 -10.82680 -10.62731 -10.54807 -10.49203 -10.43338 -9.79870 -9.52175 -9.20948 -8.96878 -8.50811 -8.29562 -8.07742 -5.93428 -3.95536 2.81262 3.07236 3.35144 3.41420 3.44196 4.47785 4.51552 4.64815 4.68302 4.85185 4.92618 4.94934 5.02657 5.08787 5.14237 5.20195 5.39839 5.41881 5.43789 5.53274 5.56279 5.66756 5.70939 5.78164 5.80782 5.83182 5.84441 5.87232 5.91269 5.94087 6.09210 6.15062 6.35163 6.40148 6.47315 6.67631 6.77004 7.09408 7.41724 7.58558 7.76442 7.82706 7.96582 8.13823 8.37323 8.49073 9.12491 9.67630 11.17395 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021686 B = 0.003936 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.870242 B = 7112.102088 C = 7665.311358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C -0.109 4.109 4 C 0.144 3.856 5 H 0.066 0.934 6 C -0.131 4.131 7 C -0.120 4.120 8 C -0.136 4.136 9 C 0.101 3.899 10 N -0.608 5.608 11 C 0.486 3.514 12 O -0.547 6.547 13 C 0.075 3.925 14 H 0.096 0.904 15 N -0.807 5.807 16 C -0.097 4.097 17 C 0.032 3.968 18 C -0.522 4.522 19 H 0.052 0.948 20 C 0.058 3.942 21 N -0.892 5.892 22 Si 0.888 3.112 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.347 0.653 42 H 0.333 0.667 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.035 0.965 46 H 0.012 0.988 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.763 -20.070 6.221 21.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.147 4.147 4 C 0.041 3.959 5 H 0.084 0.916 6 C -0.169 4.169 7 C -0.158 4.158 8 C -0.174 4.174 9 C -0.022 4.022 10 N -0.341 5.341 11 C 0.274 3.726 12 O -0.425 6.425 13 C -0.040 4.040 14 H 0.114 0.886 15 N -0.335 5.335 16 C -0.135 4.135 17 C -0.005 4.005 18 C -0.560 4.560 19 H 0.070 0.930 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.716 3.284 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.200 1.200 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.117 0.883 41 H 0.161 0.839 42 H 0.144 0.856 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.030 0.970 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.784 -19.381 6.172 20.689 hybrid contribution 0.017 -0.585 -0.851 1.033 sum -3.767 -19.966 5.321 21.003 Atomic orbital electron populations 1.21704 0.95892 1.00895 1.02005 1.21730 0.96098 0.97888 1.01256 1.22162 0.92626 0.94868 1.04997 1.21214 0.95045 0.81856 0.97814 0.91605 1.21963 0.95640 1.00312 0.99002 1.21528 0.95675 0.96548 1.02018 1.21934 1.01049 0.95443 0.98988 1.21905 0.79524 1.02138 0.98645 1.48277 1.06812 1.05623 1.73426 1.22644 0.86585 0.88664 0.74724 1.90652 1.16583 1.85084 1.50198 1.21874 0.95350 0.85326 1.01467 0.88619 1.59022 1.14181 1.53206 1.07048 1.21694 0.99215 1.00917 0.91695 1.19009 0.95546 0.89569 0.96392 1.21278 1.36872 1.02702 0.95176 0.93018 1.24990 0.96297 0.96888 0.96132 1.69976 1.43784 1.11927 1.27483 0.86660 0.78581 0.78786 0.84336 1.20733 1.21299 1.20006 0.93240 0.92905 0.92702 0.92503 0.92484 0.91612 0.88686 0.90870 0.91720 0.91820 0.91845 0.90486 0.91507 0.91128 0.88256 0.83898 0.85588 0.92790 0.92896 0.94700 0.96962 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.06 16 2 C -0.13 -1.30 5.40 -26.73 -0.14 -1.45 16 3 C -0.11 -1.36 3.17 -26.73 -0.08 -1.45 16 4 C 0.14 1.68 3.02 -67.82 -0.20 1.48 16 5 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 6 C -0.13 -1.24 4.79 -26.83 -0.13 -1.37 16 7 C -0.12 -1.03 5.89 -26.69 -0.16 -1.19 16 8 C -0.14 -1.30 6.08 -26.61 -0.16 -1.46 16 9 C 0.10 1.19 5.53 -3.71 -0.02 1.17 16 10 N -0.61 -8.10 2.98 -165.47 -0.49 -8.60 16 11 C 0.49 7.71 6.78 -10.99 -0.07 7.64 16 12 O -0.55 -9.56 11.81 5.56 0.07 -9.49 16 13 C 0.08 1.28 2.29 -68.87 -0.16 1.12 16 14 H 0.10 1.57 6.82 -51.93 -0.35 1.21 16 15 N -0.81 -13.73 8.44 -5.65 -0.05 -13.78 16 16 C -0.10 -1.96 4.46 -26.73 -0.12 -2.08 16 17 C 0.03 0.81 4.86 -27.88 -0.14 0.68 16 18 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 19 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -26.83 13.29 55.43 0.74 -26.10 16 22 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.51 6.83 -51.93 -0.35 0.16 16 31 H 0.07 0.93 7.26 -51.93 -0.38 0.56 16 32 H 0.09 1.45 6.22 -51.93 -0.32 1.13 16 33 H 0.07 0.60 6.85 -51.93 -0.36 0.24 16 34 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.10 1.30 4.95 -51.93 -0.26 1.04 16 41 H 0.35 5.98 8.58 -39.29 -0.34 5.64 16 42 H 0.33 4.95 9.06 -39.29 -0.36 4.59 16 43 H 0.05 1.03 6.79 -51.93 -0.35 0.68 16 44 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.03 0.97 7.75 -51.93 -0.40 0.56 16 46 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 357.13 15.07 5.38 5.38 Total: -1.00 -30.74 357.13 -9.32 -40.05 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -8.51 Total: 7.27 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -1.43 Total: -11.42 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.20 Total: -48.47 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.07 Total: -9.49 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.74 -9.32 -40.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424181955.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.125 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds