Wall clock time and date at job start Tue Mar 31 2020 06:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47045 * 2 1 4 4 C 1.53001 * 109.47354 * 185.20786 * 3 2 1 5 5 H 1.08998 * 109.58241 * 58.96601 * 4 3 2 6 6 C 1.53186 * 109.58462 * 298.68205 * 4 3 2 7 7 C 1.53041 * 109.31200 * 185.43583 * 6 4 3 8 8 C 1.53034 * 109.53820 * 61.36301 * 7 6 4 9 9 C 1.53187 * 109.31465 * 298.63738 * 8 7 6 10 10 N 1.46924 * 108.89587 * 54.56289 * 9 8 7 11 11 C 1.34774 * 120.62873 * 126.45868 * 10 9 8 12 12 O 1.21284 * 119.99615 * 185.03273 * 11 10 9 13 13 C 1.50700 * 120.00305 * 5.03475 * 11 10 9 14 14 H 1.09001 * 109.46907 * 39.99787 * 13 11 10 15 15 N 1.46898 * 109.47050 * 160.00000 * 13 11 10 16 16 C 1.52995 * 109.46947 * 279.99585 * 13 11 10 17 17 C 1.53001 * 109.47021 * 175.00021 * 16 13 11 18 18 C 1.50702 * 109.47183 * 180.02562 * 17 16 13 19 19 H 1.08002 * 119.99912 * 0.02562 * 18 17 16 20 20 C 1.37870 * 120.00134 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99997 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00122 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47083 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47484 * 120.00297 * 22 20 18 25 25 H 1.48507 * 109.47076 * 239.99944 * 22 20 18 26 26 H 1.08995 * 109.47164 * 299.99905 * 1 2 3 27 27 H 1.09001 * 109.47058 * 60.00037 * 1 2 3 28 28 H 1.08997 * 109.46892 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47164 * 240.00095 * 2 1 3 30 30 H 1.08997 * 109.47275 * 119.99509 * 2 1 3 31 31 H 1.09006 * 109.47392 * 65.20598 * 3 2 1 32 32 H 1.09004 * 109.47198 * 305.21145 * 3 2 1 33 33 H 1.09007 * 109.49699 * 65.48470 * 6 4 3 34 34 H 1.09001 * 109.49961 * 305.38879 * 6 4 3 35 35 H 1.09001 * 109.45778 * 301.34335 * 7 6 4 36 36 H 1.09000 * 109.46132 * 181.38706 * 7 6 4 37 37 H 1.09008 * 109.49868 * 178.68178 * 8 7 6 38 38 H 1.09001 * 109.49977 * 58.59088 * 8 7 6 39 39 H 1.08999 * 109.58879 * 174.42451 * 9 8 7 40 40 H 1.09003 * 109.58717 * 294.70034 * 9 8 7 41 41 H 1.00896 * 111.00470 * 59.99856 * 15 13 11 42 42 H 1.00903 * 111.00191 * 183.95831 * 15 13 11 43 43 H 1.09004 * 109.47474 * 295.00117 * 16 13 11 44 44 H 1.08997 * 109.47040 * 55.00289 * 16 13 11 45 45 H 1.08998 * 109.47176 * 299.99634 * 17 16 13 46 46 H 1.08997 * 109.46995 * 60.00240 * 17 16 13 47 47 H 0.97002 * 120.00416 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5644 1.4446 -0.1309 5 1 3.8524 0.9425 -1.0545 6 6 4.1835 0.7146 1.0651 7 6 5.7076 0.8373 0.9993 8 6 6.1060 2.3129 1.0750 9 6 5.5087 3.0610 -0.1209 10 7 4.0583 2.8286 -0.1513 11 6 3.1976 3.8649 -0.1932 12 8 2.0033 3.6643 -0.1258 13 6 3.7190 5.2727 -0.3237 14 1 4.5539 5.2874 -1.0243 15 7 2.6481 6.1475 -0.8196 16 6 4.1918 5.7703 1.0437 17 6 4.8348 7.1500 0.8899 18 6 5.3011 7.6399 2.2366 19 1 5.1539 7.0281 3.1144 20 6 5.9165 8.8686 2.3481 21 7 6.0972 9.6129 1.2790 22 14 6.4951 9.4754 4.0173 23 1 6.1766 8.4584 5.0514 24 1 7.9623 9.7020 3.9804 25 1 5.8058 10.7488 4.3472 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 1.7548 1.9288 0.9330 32 1 1.6025 1.9826 -0.8397 33 1 3.9015 -0.3379 1.0346 34 1 3.8222 1.1619 1.9911 35 1 6.0659 0.4120 0.0618 36 1 6.1518 0.2978 1.8358 37 1 7.1925 2.3980 1.0516 38 1 5.7267 2.7452 2.0009 39 1 5.7057 4.1282 -0.0198 40 1 5.9572 2.6925 -1.0435 41 1 1.8620 6.1510 -0.1871 42 1 2.9897 7.0838 -0.9770 43 1 3.3395 5.8400 1.7196 44 1 4.9228 5.0722 1.4514 45 1 5.6872 7.0804 0.2141 46 1 4.1038 7.8482 0.4821 47 1 6.5298 10.4776 1.3574 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424181956.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:03 Heat of formation + Delta-G solvation = -57.150281 kcal Electronic energy + Delta-G solvation = -23664.269166 eV Core-core repulsion = 20459.956828 eV Total energy + Delta-G solvation = -3204.312337 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.53324 -37.50953 -35.88337 -34.73722 -32.88191 -32.71764 -31.04756 -29.88196 -27.29614 -26.36102 -24.62166 -23.90108 -22.49583 -20.93672 -20.80427 -20.35052 -18.58277 -17.11360 -16.31767 -15.92121 -15.40060 -14.93113 -14.66897 -14.58754 -14.37920 -14.11344 -13.83693 -13.68434 -13.41410 -13.11866 -12.94947 -12.58459 -12.47287 -12.11447 -11.92097 -11.65960 -11.56515 -11.33439 -11.12508 -11.02767 -10.98058 -10.88024 -10.73468 -10.63147 -10.43491 -10.38983 -9.97456 -9.66892 -9.24070 -8.73070 -8.45139 -8.41219 -8.08576 -6.09437 -4.12488 2.96749 3.11173 3.25216 3.33448 3.37224 4.38438 4.55337 4.73219 4.77624 4.95970 5.00600 5.06424 5.12498 5.19511 5.22211 5.26907 5.27469 5.45727 5.52362 5.58986 5.63853 5.73259 5.75514 5.79121 5.86724 5.89926 5.91561 5.92793 6.00842 6.02917 6.16956 6.24022 6.32104 6.46057 6.50925 6.55802 6.84971 6.87756 7.45327 7.51795 7.60783 7.69961 7.87813 7.93136 8.30495 8.53250 8.93712 9.52585 11.01440 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020809 B = 0.004159 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.259077 B = 6730.623277 C = 7352.382345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C -0.107 4.107 4 C 0.148 3.852 5 H 0.065 0.935 6 C -0.132 4.132 7 C -0.119 4.119 8 C -0.136 4.136 9 C 0.101 3.899 10 N -0.612 5.612 11 C 0.527 3.473 12 O -0.530 6.530 13 C 0.072 3.928 14 H 0.094 0.906 15 N -0.830 5.830 16 C -0.139 4.139 17 C 0.025 3.975 18 C -0.522 4.522 19 H 0.055 0.945 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.065 0.935 41 H 0.345 0.655 42 H 0.353 0.647 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.018 0.982 46 H 0.017 0.983 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.581 -18.462 -3.331 18.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.144 4.144 4 C 0.045 3.955 5 H 0.083 0.917 6 C -0.171 4.171 7 C -0.157 4.157 8 C -0.174 4.174 9 C -0.022 4.022 10 N -0.347 5.347 11 C 0.316 3.684 12 O -0.407 6.407 13 C -0.043 4.043 14 H 0.112 0.888 15 N -0.362 5.362 16 C -0.179 4.179 17 C -0.013 4.013 18 C -0.560 4.560 19 H 0.073 0.927 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.210 1.210 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.116 0.884 40 H 0.083 0.917 41 H 0.158 0.842 42 H 0.168 0.832 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.187 -18.876 -3.996 19.556 hybrid contribution 0.797 0.967 1.848 2.232 sum -2.390 -17.910 -2.149 18.196 Atomic orbital electron populations 1.21701 0.95916 1.00802 1.02067 1.21740 0.96107 0.98022 1.01170 1.22164 0.92426 0.94601 1.05216 1.21279 0.95132 0.81557 0.97494 0.91665 1.22047 0.95577 1.00455 0.98987 1.21519 0.95736 0.96542 1.01856 1.21911 1.00910 0.95466 0.99126 1.21857 0.79709 1.02400 0.98210 1.48121 1.06590 1.05606 1.74337 1.20825 0.86200 0.86708 0.74625 1.90659 1.15966 1.84699 1.49365 1.21534 0.94772 0.89733 0.98266 0.88800 1.58749 1.09158 1.15264 1.53045 1.22436 1.00556 1.00999 0.93907 1.19102 0.95437 0.89252 0.97460 1.21209 1.38352 1.02637 0.93840 0.92711 1.25006 0.95900 0.96795 0.96595 1.69958 1.43265 1.11720 1.28229 0.86545 0.78435 0.78799 0.84297 1.19767 1.20938 1.20957 0.92795 0.92748 0.93333 0.92653 0.92462 0.90847 0.89314 0.90978 0.91490 0.91998 0.91865 0.90568 0.91103 0.88377 0.91671 0.84215 0.83191 0.92761 0.92367 0.96397 0.96429 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.13 16 2 C -0.13 -1.37 5.47 -26.73 -0.15 -1.52 16 3 C -0.11 -1.40 3.14 -26.73 -0.08 -1.48 16 4 C 0.15 1.80 2.99 -67.58 -0.20 1.60 16 5 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 6 C -0.13 -1.37 4.89 -26.61 -0.13 -1.50 16 7 C -0.12 -1.12 5.88 -26.69 -0.16 -1.28 16 8 C -0.14 -1.48 6.08 -26.62 -0.16 -1.64 16 9 C 0.10 1.23 5.72 -3.71 -0.02 1.21 16 10 N -0.61 -8.50 2.98 -165.20 -0.49 -8.99 16 11 C 0.53 8.85 6.87 -10.99 -0.08 8.78 16 12 O -0.53 -9.90 11.68 5.55 0.06 -9.83 16 13 C 0.07 1.24 2.35 -68.87 -0.16 1.08 16 14 H 0.09 1.57 7.06 -51.93 -0.37 1.20 16 15 N -0.83 -14.48 8.94 -5.66 -0.05 -14.53 16 16 C -0.14 -2.73 4.41 -26.73 -0.12 -2.85 16 17 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16 18 C -0.52 -14.20 9.11 -34.44 -0.31 -14.52 16 19 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 22 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.55 6.88 -51.93 -0.36 0.19 16 31 H 0.07 1.13 7.11 -51.93 -0.37 0.76 16 32 H 0.09 1.38 6.38 -51.93 -0.33 1.05 16 33 H 0.07 0.64 6.90 -51.93 -0.36 0.28 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.10 1.33 4.63 -51.93 -0.24 1.09 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.34 6.07 8.58 -39.29 -0.34 5.74 16 42 H 0.35 6.18 7.55 -39.29 -0.30 5.88 16 43 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.06 1.10 6.58 -51.93 -0.34 0.76 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 47 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 355.20 15.07 5.35 5.35 Total: -1.00 -29.55 355.20 -9.23 -38.79 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -8.39 Total: 9.47 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -1.43 Total: -11.27 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: 0.19 Total: -48.64 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.06 Total: -9.83 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.55 -9.23 -38.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424181956.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.362 kcal (2) G-P(sol) polarization free energy of solvation -29.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds