Wall clock time and date at job start Tue Mar 31 2020 06:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46943 * 2 1 4 4 C 1.52999 * 109.47153 * 184.83526 * 3 2 1 5 5 H 1.09004 * 109.58689 * 298.69894 * 4 3 2 6 6 C 1.53195 * 109.58990 * 58.98139 * 4 3 2 7 7 C 1.53349 * 109.15037 * 174.43687 * 6 4 3 8 8 C 1.53041 * 109.60991 * 298.71638 * 7 6 4 9 9 C 1.53190 * 109.31236 * 61.37130 * 8 7 6 10 10 N 1.46923 * 108.77549 * 305.36457 * 9 8 7 11 11 C 1.34778 * 120.62990 * 233.62816 * 10 9 8 12 12 O 1.21285 * 119.99722 * 185.38469 * 11 10 9 13 13 C 1.50695 * 120.00328 * 5.38608 * 11 10 9 14 14 H 1.09007 * 109.47123 * 320.00220 * 13 11 10 15 15 N 1.46900 * 109.47445 * 200.00013 * 13 11 10 16 16 C 1.53009 * 109.46848 * 79.99878 * 13 11 10 17 17 C 1.52994 * 109.47082 * 185.00153 * 16 13 11 18 18 C 1.50702 * 109.47275 * 180.02562 * 17 16 13 19 19 H 1.07999 * 119.99861 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00164 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99791 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99879 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47186 * 89.99835 * 22 20 18 24 24 H 1.48498 * 109.46954 * 209.99599 * 22 20 18 25 25 H 1.48501 * 109.47383 * 330.00062 * 22 20 18 26 26 H 1.09000 * 109.46813 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47057 * 300.00154 * 1 2 3 28 28 H 1.08995 * 109.46677 * 60.00232 * 1 2 3 29 29 H 1.08993 * 109.47519 * 239.99650 * 2 1 3 30 30 H 1.09005 * 109.46749 * 119.99246 * 2 1 3 31 31 H 1.09000 * 109.47610 * 64.83478 * 3 2 1 32 32 H 1.09006 * 109.47025 * 304.82924 * 3 2 1 33 33 H 1.08993 * 109.49490 * 294.52242 * 6 4 3 34 34 H 1.09004 * 109.49448 * 54.61427 * 6 4 3 35 35 H 1.08997 * 109.41791 * 178.67882 * 7 6 4 36 36 H 1.08999 * 109.42841 * 58.76001 * 7 6 4 37 37 H 1.09002 * 109.49475 * 301.41964 * 8 7 6 38 38 H 1.08995 * 109.52589 * 181.34354 * 8 7 6 39 39 H 1.09001 * 109.58543 * 185.58017 * 9 8 7 40 40 H 1.08999 * 109.58584 * 65.15435 * 9 8 7 41 41 H 1.00899 * 110.99583 * 299.99653 * 15 13 11 42 42 H 1.00890 * 110.99814 * 63.95351 * 15 13 11 43 43 H 1.09005 * 109.46833 * 305.00189 * 16 13 11 44 44 H 1.08997 * 109.46899 * 65.00333 * 16 13 11 45 45 H 1.08998 * 109.47551 * 300.00351 * 17 16 13 46 46 H 1.09006 * 109.47133 * 59.99706 * 17 16 13 47 47 H 0.96995 * 119.99439 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5651 1.4442 -0.1216 5 1 4.0005 0.9264 0.7331 6 6 3.9781 0.7361 -1.4158 7 6 5.4953 0.8649 -1.5976 8 6 5.8755 2.3431 -1.7100 9 6 5.4812 3.0672 -0.4189 10 7 4.0547 2.8290 -0.1600 11 6 3.2111 3.8613 0.0383 12 8 2.0573 3.6508 0.3474 13 6 3.7013 5.2770 -0.1242 14 1 4.7048 5.3641 0.2925 15 7 2.7963 6.1929 0.5830 16 6 3.7332 5.6382 -1.6107 17 6 4.3475 7.0286 -1.7845 18 6 4.3783 7.3847 -3.2485 19 1 3.9983 6.6887 -3.9817 20 6 4.8928 8.5987 -3.6521 21 7 5.3560 9.4460 -2.7593 22 14 4.9317 9.0397 -5.4668 23 1 3.6709 9.7326 -5.8350 24 1 6.0852 9.9359 -5.7337 25 1 5.0698 7.8011 -6.2744 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.7491 1.9308 0.9301 32 1 1.6077 1.9807 -0.8436 33 1 3.7032 -0.3170 -1.3578 34 1 3.4701 1.1992 -2.2618 35 1 5.7971 0.3423 -2.5053 36 1 6.0020 0.4238 -0.7393 37 1 5.3498 2.7908 -2.5534 38 1 6.9510 2.4319 -1.8631 39 1 5.6586 4.1368 -0.5311 40 1 6.0726 2.6816 0.4115 41 1 1.8590 6.1309 0.2147 42 1 2.8070 6.0163 1.5763 43 1 4.3340 4.9056 -2.1497 44 1 2.7177 5.6375 -2.0066 45 1 3.7469 7.7612 -1.2454 46 1 5.3630 7.0294 -1.3885 47 1 5.7175 10.3001 -3.0432 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424181957.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:07 Heat of formation + Delta-G solvation = -55.434470 kcal Electronic energy + Delta-G solvation = -23707.153062 eV Core-core repulsion = 20502.915128 eV Total energy + Delta-G solvation = -3204.237934 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.63719 -37.62406 -35.76057 -34.65784 -32.84506 -32.74177 -31.06185 -30.07657 -27.28026 -26.30553 -24.63369 -23.87973 -22.44403 -20.97698 -20.80543 -20.24588 -18.62330 -16.99297 -16.39208 -15.89844 -15.40498 -15.36104 -14.90728 -14.61282 -14.40244 -14.06191 -13.86872 -13.70794 -13.42144 -13.13728 -12.99971 -12.58179 -12.27980 -11.98139 -11.88415 -11.67029 -11.52000 -11.39918 -11.11812 -10.99264 -10.89012 -10.77374 -10.59874 -10.56845 -10.48595 -10.37757 -9.80396 -9.50768 -9.20315 -8.96849 -8.49495 -8.29466 -8.07696 -5.93522 -3.95534 2.79636 3.09377 3.34876 3.41208 3.43916 4.48865 4.52859 4.69246 4.75895 4.88793 4.97080 4.98119 5.04866 5.09996 5.16296 5.22056 5.40211 5.42029 5.45215 5.54853 5.57846 5.68685 5.73017 5.83157 5.84271 5.86822 5.87995 5.90337 5.97919 6.00886 6.12081 6.23167 6.39489 6.42181 6.49732 6.68151 6.78181 7.10010 7.42056 7.58945 7.76382 7.83005 7.96629 8.13870 8.37511 8.49094 9.12415 9.67589 11.17376 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018987 B = 0.004254 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.367957 B = 6580.758379 C = 7022.373480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C -0.109 4.109 4 C 0.145 3.855 5 H 0.064 0.936 6 C -0.133 4.133 7 C -0.119 4.119 8 C -0.137 4.137 9 C 0.103 3.897 10 N -0.607 5.607 11 C 0.486 3.514 12 O -0.547 6.547 13 C 0.075 3.925 14 H 0.096 0.904 15 N -0.808 5.808 16 C -0.094 4.094 17 C 0.032 3.968 18 C -0.521 4.521 19 H 0.051 0.949 20 C 0.058 3.942 21 N -0.892 5.892 22 Si 0.888 3.112 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.065 0.935 41 H 0.347 0.653 42 H 0.333 0.667 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.034 0.966 46 H 0.012 0.988 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.236 -19.325 6.568 20.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.147 4.147 4 C 0.042 3.958 5 H 0.082 0.918 6 C -0.171 4.171 7 C -0.156 4.156 8 C -0.175 4.175 9 C -0.020 4.020 10 N -0.341 5.341 11 C 0.273 3.727 12 O -0.425 6.425 13 C -0.041 4.041 14 H 0.113 0.887 15 N -0.335 5.335 16 C -0.132 4.132 17 C -0.005 4.005 18 C -0.560 4.560 19 H 0.069 0.931 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.716 3.284 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.200 1.200 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.116 0.884 40 H 0.084 0.916 41 H 0.161 0.839 42 H 0.144 0.856 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.030 0.970 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.295 -18.644 6.473 19.778 hybrid contribution -0.284 -0.670 -0.818 1.095 sum -1.579 -19.314 5.655 20.187 Atomic orbital electron populations 1.21702 0.95894 1.00880 1.02016 1.21757 0.96127 0.97925 1.01303 1.22162 0.92418 0.94772 1.05316 1.21278 0.95599 0.81929 0.97020 0.91757 1.22112 0.96303 1.00551 0.98133 1.21570 0.95739 0.96585 1.01745 1.21926 1.01851 0.95468 0.98285 1.21858 0.80571 1.02416 0.97184 1.48284 1.09044 1.05768 1.71033 1.22646 0.85923 0.88952 0.75137 1.90656 1.18597 1.85084 1.48173 1.21897 0.97789 0.84780 0.99615 0.88653 1.59013 1.14103 1.53279 1.07131 1.21653 1.01269 1.01575 0.88740 1.19007 0.95627 0.89611 0.96250 1.21268 1.40199 1.01650 0.92848 0.93062 1.24982 0.95585 0.96524 0.97179 1.69974 1.41499 1.08680 1.33018 0.86667 0.77546 0.78302 0.85886 1.20732 1.21288 1.20023 0.93255 0.92801 0.92801 0.92264 0.92637 0.88980 0.91277 0.90875 0.91410 0.91782 0.92080 0.90799 0.90521 0.88416 0.91646 0.83915 0.85564 0.92821 0.92999 0.94721 0.96971 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.16 0.37 -1.11 16 2 C -0.13 -1.36 5.70 -26.73 -0.15 -1.51 16 3 C -0.11 -1.40 3.17 -26.73 -0.08 -1.48 16 4 C 0.14 1.71 3.02 -67.60 -0.20 1.51 16 5 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 6 C -0.13 -1.37 4.86 -26.45 -0.13 -1.49 16 7 C -0.12 -1.11 5.89 -26.53 -0.16 -1.27 16 8 C -0.14 -1.47 6.08 -26.61 -0.16 -1.64 16 9 C 0.10 1.19 5.87 -3.71 -0.02 1.17 16 10 N -0.61 -8.09 2.97 -165.22 -0.49 -8.58 16 11 C 0.49 7.70 6.77 -10.99 -0.07 7.63 16 12 O -0.55 -9.56 11.80 5.55 0.07 -9.49 16 13 C 0.07 1.27 2.29 -68.86 -0.16 1.11 16 14 H 0.10 1.55 6.54 -51.93 -0.34 1.21 16 15 N -0.81 -13.74 8.44 -5.65 -0.05 -13.79 16 16 C -0.09 -1.91 4.54 -26.73 -0.12 -2.03 16 17 C 0.03 0.82 4.86 -27.88 -0.14 0.68 16 18 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 19 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 22 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.56 6.29 -51.93 -0.33 0.23 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 1.38 6.23 -51.93 -0.32 1.05 16 32 H 0.07 1.06 7.24 -51.93 -0.38 0.68 16 33 H 0.07 0.64 6.63 -51.93 -0.34 0.30 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 1.25 5.07 -51.93 -0.26 0.99 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.35 5.99 8.58 -39.29 -0.34 5.65 16 42 H 0.33 4.93 9.06 -39.30 -0.36 4.58 16 43 H 0.05 1.04 7.32 -51.93 -0.38 0.66 16 44 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 46 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 357.43 15.07 5.39 5.39 Total: -1.00 -30.74 357.43 -9.30 -40.03 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -8.48 Total: 7.69 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -1.44 Total: -11.84 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.20 Total: -48.46 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.07 Total: -9.49 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.74 -9.30 -40.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424181957.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.401 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds