Wall clock time and date at job start Tue Mar 31 2020 06:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46969 * 2 1 4 4 C 1.53005 * 109.47056 * 240.00306 * 2 1 3 5 5 N 1.46500 * 109.47149 * 60.00247 * 4 2 1 6 6 C 1.34779 * 119.99788 * 179.97438 * 5 4 2 7 7 O 1.21584 * 119.99849 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99815 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99696 * 180.02562 * 8 6 5 10 10 C 1.50707 * 109.46831 * 180.02562 * 9 8 6 11 11 H 1.07993 * 119.99937 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99716 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00175 * 359.97438 * 12 10 9 14 14 Si 1.86791 * 119.99711 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.47445 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47349 * 120.00211 * 14 12 10 17 17 H 1.48499 * 109.47227 * 239.99836 * 14 12 10 18 18 C 1.52997 * 109.47131 * 119.99938 * 2 1 3 19 19 C 1.53006 * 109.47127 * 180.02562 * 18 2 1 20 20 C 1.52997 * 109.47127 * 179.97438 * 19 18 2 21 21 C 1.53000 * 109.47060 * 300.00449 * 20 19 18 22 22 C 1.52996 * 109.47328 * 60.00126 * 21 20 19 23 23 C 1.52997 * 109.47232 * 300.00126 * 18 2 1 24 24 H 1.08996 * 109.47452 * 300.00062 * 1 2 3 25 25 H 1.09000 * 109.47054 * 59.99902 * 1 2 3 26 26 H 1.09001 * 109.46997 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47067 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47312 * 299.99939 * 3 2 1 29 29 H 1.09004 * 109.46930 * 59.99996 * 3 2 1 30 30 H 1.09002 * 109.46668 * 179.97438 * 4 2 1 31 31 H 1.08998 * 109.47061 * 299.99160 * 4 2 1 32 32 H 0.96998 * 119.99903 * 359.97438 * 5 4 2 33 33 H 0.97000 * 120.00477 * 0.02562 * 8 6 5 34 34 H 1.09001 * 109.47425 * 299.99731 * 9 8 6 35 35 H 1.08993 * 109.47615 * 60.00136 * 9 8 6 36 36 H 0.96993 * 120.00410 * 180.02562 * 13 12 10 37 37 H 1.09001 * 109.46832 * 60.00325 * 18 2 1 38 38 H 1.08998 * 109.46505 * 59.99871 * 19 18 2 39 39 H 1.08996 * 109.46884 * 300.00752 * 19 18 2 40 40 H 1.09002 * 109.47153 * 180.02562 * 20 19 18 41 41 H 1.09001 * 109.46832 * 60.00321 * 20 19 18 42 42 H 1.09004 * 109.46724 * 180.02562 * 21 20 19 43 43 H 1.09001 * 109.47194 * 299.99650 * 21 20 19 44 44 H 1.08992 * 109.47554 * 59.99639 * 22 21 20 45 45 H 1.09004 * 109.47108 * 179.97438 * 22 21 20 46 46 H 1.09002 * 109.47045 * 59.99942 * 23 18 2 47 47 H 1.09001 * 109.47375 * 299.99867 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.5517 -0.0305 -2.4455 6 6 1.8777 -0.4906 -3.6696 7 8 2.5767 -1.4792 -3.7811 8 7 1.4281 0.1445 -4.7700 9 6 1.7821 -0.3561 -6.1005 10 6 1.1584 0.5261 -7.1513 11 1 0.5581 1.3743 -6.8573 12 6 1.3543 0.2501 -8.4880 13 7 2.0857 -0.7825 -8.8459 14 14 0.5807 1.3431 -9.7903 15 1 -0.1892 2.4289 -9.1318 16 1 1.6474 1.9352 -10.6370 17 1 -0.3316 0.5338 -10.6376 18 6 2.0400 -0.7212 1.2492 19 6 3.5700 -0.7207 1.2495 20 6 4.0800 -1.4413 2.4991 21 6 3.5694 -0.7199 3.7480 22 6 2.0394 -0.7206 3.7477 23 6 1.5300 0.0000 2.4984 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 -0.7208 -1.2495 31 1 1.6767 -1.7489 -1.2493 32 1 0.9937 0.7579 -2.3564 33 1 0.8702 0.9329 -4.6810 34 1 2.8659 -0.3470 -6.2157 35 1 1.4130 -1.3751 -6.2155 36 1 2.2238 -0.9765 -9.7862 37 1 1.6766 -1.7489 1.2492 38 1 3.9329 0.3071 1.2497 39 1 3.9337 -1.2341 0.3595 40 1 5.1700 -1.4405 2.4996 41 1 3.7171 -2.4691 2.4993 42 1 3.9331 -1.2331 4.6382 43 1 3.9323 0.3079 3.7478 44 1 1.6765 -1.7483 3.7478 45 1 1.6757 -0.2070 4.6377 46 1 0.4399 0.0000 2.4984 47 1 1.8933 1.0277 2.4985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426414272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:00 Heat of formation + Delta-G solvation = -73.425420 kcal Electronic energy + Delta-G solvation = -22833.292355 eV Core-core repulsion = 19628.274275 eV Total energy + Delta-G solvation = -3205.018080 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.21634 -38.83585 -36.27905 -34.07466 -33.06084 -32.14366 -31.08644 -29.40760 -27.50614 -27.45287 -25.90813 -23.18493 -22.63372 -22.11819 -20.16610 -20.08390 -18.65242 -17.95699 -16.10469 -15.98587 -15.37697 -15.13026 -14.68912 -14.60719 -14.43679 -14.32321 -14.07825 -13.68429 -13.26927 -13.18985 -12.93423 -12.61118 -12.30895 -12.18856 -11.93869 -11.92311 -11.69399 -11.56409 -11.29588 -11.18611 -10.94941 -10.90189 -10.86714 -10.80901 -10.41238 -10.27244 -10.10298 -10.00053 -9.33123 -9.30965 -8.71247 -8.57423 -7.68394 -6.12267 -4.18436 3.25896 3.32224 3.35403 3.50459 4.04845 4.35164 4.40534 4.43064 4.49896 4.73366 4.79994 4.91890 5.10109 5.14820 5.21090 5.22258 5.23814 5.29270 5.35901 5.37394 5.45055 5.54460 5.61404 5.69530 5.73847 5.81336 5.87163 5.92527 5.94166 5.95641 5.97534 6.01264 6.05743 6.17099 6.18918 6.31506 6.39603 6.99020 7.19356 7.57937 7.61403 7.62320 7.96662 8.10007 8.81533 9.01774 9.39768 9.54381 10.98132 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041448 B = 0.002810 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.382938 B = 9962.050234 C =10312.274724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.071 4.071 3 C -0.145 4.145 4 C 0.151 3.849 5 N -0.755 5.755 6 C 0.692 3.308 7 O -0.603 6.603 8 N -0.731 5.731 9 C 0.267 3.733 10 C -0.540 4.540 11 H 0.062 0.938 12 C 0.062 3.938 13 N -0.886 5.886 14 Si 0.904 3.096 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.071 4.071 19 C -0.122 4.122 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.116 4.116 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.389 0.611 33 H 0.385 0.615 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.265 0.735 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.379 3.608 25.641 25.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 C -0.202 4.202 4 C 0.026 3.974 5 N -0.413 5.413 6 C 0.391 3.609 7 O -0.482 6.482 8 N -0.383 5.383 9 C 0.146 3.854 10 C -0.578 4.578 11 H 0.081 0.919 12 C -0.141 4.141 13 N -0.523 5.523 14 Si 0.731 3.269 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.090 4.090 19 C -0.160 4.160 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.153 4.153 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.223 0.777 33 H 0.217 0.783 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.644 2.567 25.314 25.452 hybrid contribution -0.890 1.224 -0.748 1.688 sum -1.534 3.791 24.566 24.904 Atomic orbital electron populations 1.21925 0.94261 1.02167 1.01717 1.20798 0.95938 0.96019 0.94365 1.21980 1.01545 0.95061 1.01629 1.21153 0.98785 0.95349 0.82121 1.45212 1.57901 1.33583 1.04632 1.16170 0.80889 0.83373 0.80447 1.90863 1.43361 1.27960 1.86022 1.45702 1.54519 1.31662 1.06449 1.18960 0.96269 0.94983 0.75221 1.21274 1.32804 1.12834 0.90921 0.91944 1.24952 0.95142 0.95433 0.98583 1.69988 1.38085 1.27107 1.17149 0.86365 0.78982 0.80250 0.81305 1.19690 1.20829 1.20837 1.21086 0.95406 0.99375 0.93119 1.21751 0.95084 1.01142 0.97991 1.21534 1.00119 0.99453 0.94614 1.21535 0.95739 1.00647 0.97755 1.21525 0.95702 1.00742 0.97735 1.21676 1.00370 0.99535 0.93742 0.92289 0.92518 0.92447 0.92108 0.92626 0.92336 0.91808 0.92254 0.77662 0.78298 0.95813 0.95816 0.92551 0.90993 0.91568 0.91290 0.92175 0.92077 0.92454 0.92172 0.92138 0.92354 0.91760 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 7.95 37.16 0.30 -0.98 16 2 C -0.07 -0.67 0.33 -154.51 -0.05 -0.72 16 3 C -0.15 -1.29 7.60 37.16 0.28 -1.00 16 4 C 0.15 2.01 4.21 -4.04 -0.02 2.00 16 5 N -0.75 -11.58 4.96 -65.22 -0.32 -11.90 16 6 C 0.69 14.74 8.57 -86.92 -0.74 14.00 16 7 O -0.60 -15.57 16.34 5.29 0.09 -15.48 16 8 N -0.73 -16.11 5.55 -66.42 -0.37 -16.48 16 9 C 0.27 7.32 5.43 -5.19 -0.03 7.29 16 10 C -0.54 -14.94 9.28 -34.43 -0.32 -15.26 16 11 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 14 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 C -0.07 -0.60 1.55 -90.62 -0.14 -0.74 16 19 C -0.12 -1.07 4.50 -26.73 -0.12 -1.19 16 20 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 21 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 22 C -0.12 -0.82 5.92 -26.76 -0.16 -0.98 16 23 C -0.12 -0.84 4.49 -26.76 -0.12 -0.96 16 24 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 25 H 0.06 0.52 6.86 -51.93 -0.36 0.17 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.57 6.43 -51.93 -0.33 0.23 16 28 H 0.05 0.51 6.86 -51.93 -0.36 0.16 16 29 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 30 H 0.06 0.92 6.43 -51.93 -0.33 0.59 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.39 4.90 6.18 -40.82 -0.25 4.65 16 33 H 0.39 7.26 8.34 -40.82 -0.34 6.92 16 34 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.57 6.43 -51.93 -0.33 0.24 16 39 H 0.07 0.70 6.43 -51.93 -0.33 0.36 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 47 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 LS Contribution 353.26 15.07 5.32 5.32 Total: -1.00 -32.54 353.26 -9.26 -41.81 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -8.16 Total: 5.41 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -1.54 Total: 1.02 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.04 Total: -54.17 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.09 Total: -15.48 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.54 -9.26 -41.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426414272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.618 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds