Wall clock time and date at job start Tue Mar 31 2020 06:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46969 * 2 1 4 4 C 1.53005 * 109.47056 * 240.00306 * 2 1 3 5 5 N 1.46500 * 109.47149 * 60.00247 * 4 2 1 6 6 C 1.34779 * 119.99788 * 179.97438 * 5 4 2 7 7 O 1.21584 * 119.99849 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99815 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99696 * 180.02562 * 8 6 5 10 10 C 1.50707 * 109.46831 * 180.02562 * 9 8 6 11 11 H 1.07993 * 119.99937 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99716 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00175 * 359.97438 * 12 10 9 14 14 Si 1.86791 * 119.99711 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.47445 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47349 * 120.00211 * 14 12 10 17 17 H 1.48499 * 109.47227 * 239.99836 * 14 12 10 18 18 C 1.52997 * 109.47131 * 119.99938 * 2 1 3 19 19 C 1.53006 * 109.47127 * 180.02562 * 18 2 1 20 20 C 1.52997 * 109.47127 * 179.97438 * 19 18 2 21 21 C 1.53000 * 109.47060 * 300.00449 * 20 19 18 22 22 C 1.52996 * 109.47328 * 60.00126 * 21 20 19 23 23 C 1.52997 * 109.47232 * 300.00126 * 18 2 1 24 24 H 1.08996 * 109.47452 * 300.00062 * 1 2 3 25 25 H 1.09000 * 109.47054 * 59.99902 * 1 2 3 26 26 H 1.09001 * 109.46997 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47067 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47312 * 299.99939 * 3 2 1 29 29 H 1.09004 * 109.46930 * 59.99996 * 3 2 1 30 30 H 1.09002 * 109.46668 * 179.97438 * 4 2 1 31 31 H 1.08998 * 109.47061 * 299.99160 * 4 2 1 32 32 H 0.96998 * 119.99903 * 359.97438 * 5 4 2 33 33 H 0.97000 * 120.00477 * 0.02562 * 8 6 5 34 34 H 1.09001 * 109.47425 * 299.99731 * 9 8 6 35 35 H 1.08993 * 109.47615 * 60.00136 * 9 8 6 36 36 H 0.96993 * 120.00410 * 180.02562 * 13 12 10 37 37 H 1.09001 * 109.46832 * 60.00325 * 18 2 1 38 38 H 1.08998 * 109.46505 * 59.99871 * 19 18 2 39 39 H 1.08996 * 109.46884 * 300.00752 * 19 18 2 40 40 H 1.09002 * 109.47153 * 180.02562 * 20 19 18 41 41 H 1.09001 * 109.46832 * 60.00321 * 20 19 18 42 42 H 1.09004 * 109.46724 * 180.02562 * 21 20 19 43 43 H 1.09001 * 109.47194 * 299.99650 * 21 20 19 44 44 H 1.08992 * 109.47554 * 59.99639 * 22 21 20 45 45 H 1.09004 * 109.47108 * 179.97438 * 22 21 20 46 46 H 1.09002 * 109.47045 * 59.99942 * 23 18 2 47 47 H 1.09001 * 109.47375 * 299.99867 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.5517 -0.0305 -2.4455 6 6 1.8777 -0.4906 -3.6696 7 8 2.5767 -1.4792 -3.7811 8 7 1.4281 0.1445 -4.7700 9 6 1.7821 -0.3561 -6.1005 10 6 1.1584 0.5261 -7.1513 11 1 0.5581 1.3743 -6.8573 12 6 1.3543 0.2501 -8.4880 13 7 2.0857 -0.7825 -8.8459 14 14 0.5807 1.3431 -9.7903 15 1 -0.1892 2.4289 -9.1318 16 1 1.6474 1.9352 -10.6370 17 1 -0.3316 0.5338 -10.6376 18 6 2.0400 -0.7212 1.2492 19 6 3.5700 -0.7207 1.2495 20 6 4.0800 -1.4413 2.4991 21 6 3.5694 -0.7199 3.7480 22 6 2.0394 -0.7206 3.7477 23 6 1.5300 0.0000 2.4984 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 -0.7208 -1.2495 31 1 1.6767 -1.7489 -1.2493 32 1 0.9937 0.7579 -2.3564 33 1 0.8702 0.9329 -4.6810 34 1 2.8659 -0.3470 -6.2157 35 1 1.4130 -1.3751 -6.2155 36 1 2.2238 -0.9765 -9.7862 37 1 1.6766 -1.7489 1.2492 38 1 3.9329 0.3071 1.2497 39 1 3.9337 -1.2341 0.3595 40 1 5.1700 -1.4405 2.4996 41 1 3.7171 -2.4691 2.4993 42 1 3.9331 -1.2331 4.6382 43 1 3.9323 0.3079 3.7478 44 1 1.6765 -1.7483 3.7478 45 1 1.6757 -0.2070 4.6377 46 1 0.4399 0.0000 2.4984 47 1 1.8933 1.0277 2.4985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426414272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:59 Heat of formation + Delta-G solvation = -94.465079 kcal Electronic energy + Delta-G solvation = -22834.204703 eV Core-core repulsion = 19628.274275 eV Total energy + Delta-G solvation = -3205.930428 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.28691 -40.25105 -37.25054 -36.08339 -34.59189 -33.99856 -31.72695 -30.20193 -29.31843 -28.19158 -27.24626 -24.70003 -23.60124 -23.12796 -21.82213 -20.84724 -19.96556 -19.21910 -18.03270 -17.35391 -16.67145 -16.58759 -16.15683 -15.71069 -15.40767 -15.19044 -15.04879 -14.81807 -14.71658 -14.31926 -14.05282 -14.01870 -13.79538 -13.26579 -12.98279 -12.86960 -12.86118 -12.73349 -12.60117 -12.32821 -12.21214 -12.04397 -11.88437 -11.59956 -11.54103 -11.44039 -11.27288 -11.09737 -10.81347 -10.75830 -10.69074 -10.22336 -9.54889 -8.28051 -6.44468 1.43669 1.45420 1.58649 1.93489 2.26783 2.40282 3.06927 3.55620 3.64345 3.72427 3.81352 4.00755 4.10699 4.22418 4.42914 4.47731 4.48493 4.64313 4.70233 4.72860 4.73360 4.79418 4.86024 4.90845 4.97400 5.07042 5.08845 5.10829 5.20154 5.24178 5.26853 5.27567 5.33811 5.35660 5.38162 5.48041 5.49961 5.51237 5.59642 5.61682 5.69939 5.71175 5.85946 6.28470 6.67781 7.24966 7.33328 7.74749 8.84733 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041448 B = 0.002810 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.382938 B = 9962.050234 C =10312.274724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.059 4.059 3 C -0.145 4.145 4 C 0.149 3.851 5 N -0.727 5.727 6 C 0.689 3.311 7 O -0.652 6.652 8 N -0.724 5.724 9 C 0.285 3.715 10 C -0.553 4.553 11 H 0.084 0.916 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.987 3.013 15 H -0.253 1.253 16 H -0.279 1.279 17 H -0.279 1.279 18 C -0.067 4.067 19 C -0.122 4.122 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.111 4.111 24 H 0.080 0.920 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.408 0.592 33 H 0.404 0.596 34 H -0.016 1.016 35 H -0.016 1.016 36 H 0.269 0.731 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.047 0.953 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.082 6.075 27.059 27.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.059 4.059 3 C -0.202 4.202 4 C 0.024 3.976 5 N -0.385 5.385 6 C 0.388 3.612 7 O -0.535 6.535 8 N -0.378 5.378 9 C 0.162 3.838 10 C -0.591 4.591 11 H 0.102 0.898 12 C -0.197 4.197 13 N -0.570 5.570 14 Si 0.810 3.190 15 H -0.176 1.176 16 H -0.204 1.204 17 H -0.204 1.204 18 C -0.086 4.086 19 C -0.160 4.160 20 C -0.157 4.157 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.148 4.148 24 H 0.099 0.901 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.245 0.755 33 H 0.239 0.761 34 H 0.002 0.998 35 H 0.002 0.998 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.385 5.089 26.808 27.391 hybrid contribution -0.306 0.389 -1.110 1.216 sum -2.691 5.478 25.698 26.413 Atomic orbital electron populations 1.21940 0.93277 1.02103 1.02722 1.20724 0.96561 0.96167 0.92455 1.21990 1.01237 0.94338 1.02600 1.21333 0.98175 0.95162 0.82885 1.44977 1.56841 1.33637 1.03082 1.16366 0.80362 0.82740 0.81702 1.90830 1.45501 1.30219 1.86932 1.45288 1.55048 1.32371 1.05053 1.18399 0.93708 0.93552 0.78132 1.21629 1.32989 1.13288 0.91170 0.89797 1.26091 0.95391 0.96879 1.01375 1.70150 1.39621 1.29273 1.17995 0.85075 0.77981 0.78282 0.77629 1.17596 1.20425 1.20442 1.21054 0.95029 0.99116 0.93428 1.21729 0.95486 1.01148 0.97597 1.21530 1.00163 0.99260 0.94783 1.21524 0.95996 1.00685 0.97253 1.21528 0.95409 1.00716 0.97994 1.21650 1.00820 0.99543 0.92808 0.90086 0.92707 0.93105 0.92709 0.92812 0.90199 0.93083 0.93798 0.75496 0.76080 0.99785 0.99795 0.92240 0.91783 0.91218 0.93447 0.92196 0.92546 0.91786 0.91856 0.92447 0.91143 0.90922 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 7.95 71.98 0.57 -1.65 16 2 C -0.06 -1.02 0.33 -52.18 -0.02 -1.04 16 3 C -0.14 -2.24 7.60 71.98 0.55 -1.69 16 4 C 0.15 4.01 4.21 86.38 0.36 4.37 16 5 N -0.73 -22.10 4.96 -478.53 -2.37 -24.48 16 6 C 0.69 30.04 8.57 179.06 1.53 31.57 16 7 O -0.65 -35.27 16.34 -3.98 -0.07 -35.34 16 8 N -0.72 -32.33 5.55 -482.30 -2.68 -35.01 16 9 C 0.29 16.27 5.43 85.64 0.46 16.74 16 10 C -0.55 -30.66 9.28 25.60 0.24 -30.42 16 11 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 12 C 0.00 0.11 5.46 84.66 0.46 0.58 16 13 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 14 Si 0.99 42.77 29.54 68.60 2.03 44.80 16 15 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 16 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 17 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 18 C -0.07 -1.06 1.55 -10.79 -0.02 -1.07 16 19 C -0.12 -2.10 4.50 30.60 0.14 -1.97 16 20 C -0.12 -1.81 5.92 30.59 0.18 -1.63 16 21 C -0.12 -1.42 5.92 30.59 0.18 -1.24 16 22 C -0.12 -1.35 5.92 30.58 0.18 -1.16 16 23 C -0.11 -1.30 4.49 30.58 0.14 -1.17 16 24 H 0.08 0.94 6.43 -2.39 -0.02 0.92 16 25 H 0.05 0.87 6.86 -2.39 -0.02 0.86 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.05 0.93 6.43 -2.39 -0.02 0.92 16 28 H 0.05 0.86 6.86 -2.39 -0.02 0.84 16 29 H 0.08 0.94 6.43 -2.38 -0.02 0.92 16 30 H 0.05 1.54 6.43 -2.39 -0.02 1.52 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.41 9.60 6.18 -92.71 -0.57 9.02 16 33 H 0.40 14.82 8.34 -92.71 -0.77 14.05 16 34 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 35 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 36 H 0.27 15.30 8.31 -92.71 -0.77 14.52 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.14 6.43 -2.39 -0.02 1.13 16 39 H 0.05 1.01 6.43 -2.39 -0.02 0.99 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 43 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 46 H 0.07 0.76 6.43 -2.39 -0.02 0.75 16 47 H 0.07 0.78 6.43 -2.39 -0.02 0.77 16 Total: -1.00 -73.02 353.26 1.77 -71.24 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -0.39 Total: 25.42 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 4.97 Total: 10.21 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -4.77 Total: -116.33 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.07 Total: -35.34 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -73.02 1.77 -71.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426414272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.221 kcal (2) G-P(sol) polarization free energy of solvation -73.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds