Wall clock time and date at job start Tue Mar 31 2020 05:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47285 * 2 1 4 4 C 1.53007 * 109.46941 * 119.99992 * 2 1 3 5 5 C 1.53004 * 109.47239 * 64.99753 * 4 2 1 6 6 N 1.46497 * 109.46858 * 179.97438 * 5 4 2 7 7 C 1.34776 * 120.00279 * 269.99641 * 6 5 4 8 8 O 1.21580 * 119.99769 * 4.52072 * 7 6 5 9 9 N 1.34772 * 120.00175 * 184.51278 * 7 6 5 10 10 C 1.46504 * 120.00169 * 184.73902 * 9 7 6 11 11 C 1.50701 * 109.47194 * 180.02562 * 10 9 7 12 12 H 1.08003 * 119.99566 * 359.97438 * 11 10 9 13 13 C 1.37872 * 119.99708 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99752 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00297 * 0.02562 * 13 11 10 16 16 H 1.48507 * 109.46839 * 89.99980 * 15 13 11 17 17 H 1.48496 * 109.47351 * 209.99559 * 15 13 11 18 18 H 1.48497 * 109.47300 * 330.00004 * 15 13 11 19 19 C 1.46502 * 119.99924 * 90.00257 * 6 5 4 20 20 C 1.54264 * 110.03171 * 230.88372 * 19 6 5 21 21 C 1.54970 * 104.15946 * 217.13391 * 20 19 6 22 22 C 1.54887 * 102.77579 * 37.88664 * 21 20 19 23 23 C 1.53872 * 110.03419 * 113.66303 * 19 6 5 24 24 H 1.08999 * 109.47127 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47171 * 300.00217 * 1 2 3 26 26 H 1.08995 * 109.46988 * 60.00182 * 1 2 3 27 27 H 1.08998 * 109.46726 * 239.99490 * 2 1 3 28 28 H 1.09001 * 109.47056 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46954 * 299.99833 * 3 2 1 30 30 H 1.08998 * 109.47655 * 60.00059 * 3 2 1 31 31 H 1.09003 * 109.47035 * 304.99880 * 4 2 1 32 32 H 1.09003 * 109.47056 * 185.00158 * 4 2 1 33 33 H 1.09003 * 109.47003 * 60.00107 * 5 4 2 34 34 H 1.08999 * 109.46770 * 299.99865 * 5 4 2 35 35 H 0.97002 * 120.00174 * 4.73317 * 9 7 6 36 36 H 1.09000 * 109.46245 * 299.99996 * 10 9 7 37 37 H 1.08997 * 109.47320 * 59.99905 * 10 9 7 38 38 H 0.97003 * 120.00132 * 180.02562 * 14 13 11 39 39 H 1.09006 * 110.01375 * 352.27647 * 19 6 5 40 40 H 1.08996 * 110.48843 * 335.78062 * 20 19 6 41 41 H 1.09002 * 110.48529 * 98.42996 * 20 19 6 42 42 H 1.08998 * 110.72046 * 279.57833 * 21 20 19 43 43 H 1.08997 * 110.91871 * 156.29699 * 21 20 19 44 44 H 1.09000 * 110.49096 * 203.40132 * 22 21 20 45 45 H 1.09010 * 110.59633 * 80.81600 * 22 21 20 46 46 H 1.09000 * 110.03782 * 238.57229 * 23 19 6 47 47 H 1.09005 * 110.03305 * 0.02562 * 23 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1955 1.1881 6 7 2.1240 -2.8862 2.3840 7 6 3.3459 -3.4548 2.3817 8 8 4.0752 -3.3246 1.4176 9 7 3.7595 -4.1676 3.4481 10 6 5.1245 -4.6981 3.4899 11 6 5.3315 -5.4512 4.7787 12 1 4.5268 -5.5268 5.4951 13 6 6.5480 -6.0437 5.0431 14 7 6.7288 -6.7006 6.1680 15 14 7.9399 -5.9123 3.8042 16 1 8.7477 -4.7004 4.0940 17 1 8.8030 -7.1169 3.8997 18 1 7.3755 -5.8152 2.4341 19 6 1.2845 -2.9589 3.5824 20 6 2.0847 -2.4949 4.8170 21 6 1.6001 -3.4279 5.9555 22 6 1.4336 -4.7890 5.2353 23 6 0.8703 -4.4167 3.8482 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6053 -0.2617 2.1370 32 1 3.1263 -0.6444 1.2953 33 1 2.0698 -2.6551 0.3004 34 1 0.5488 -2.2723 1.1422 35 1 3.1535 -4.3294 4.1880 36 1 5.2783 -5.3718 2.6470 37 1 5.8363 -3.8747 3.4315 38 1 7.5848 -7.1171 6.3543 39 1 0.3988 -2.3362 3.4559 40 1 3.1540 -2.6224 4.6486 41 1 1.8558 -1.4552 5.0513 42 1 0.6467 -3.0840 6.3565 43 1 2.3473 -3.4979 6.7459 44 1 0.7301 -5.4228 5.7752 45 1 2.3966 -5.2897 5.1341 46 1 -0.2164 -4.5015 3.8515 47 1 1.2942 -5.0703 3.0858 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426435773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:42 Heat of formation + Delta-G solvation = -42.396629 kcal Electronic energy + Delta-G solvation = -23873.177473 eV Core-core repulsion = 20669.504902 eV Total energy + Delta-G solvation = -3203.672571 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.48894 -37.35818 -36.96288 -34.53299 -33.51313 -32.23451 -29.56958 -28.61888 -27.81619 -27.31383 -26.75704 -23.56111 -21.83649 -20.98951 -20.65301 -20.03098 -19.17703 -17.23985 -16.57976 -16.27633 -15.40385 -15.04512 -14.81679 -14.61526 -14.47595 -13.93746 -13.91564 -13.44769 -13.12458 -12.95962 -12.77025 -12.54330 -12.33299 -12.18031 -11.86352 -11.73365 -11.53801 -11.16158 -11.00083 -10.96557 -10.94527 -10.86795 -10.75015 -10.71593 -10.61821 -10.46764 -10.34940 -9.91932 -9.39097 -9.36149 -8.72317 -8.38198 -7.81074 -6.17800 -4.19250 3.19005 3.30355 3.37348 3.46945 3.83454 4.37443 4.61403 4.67216 4.70015 4.80541 4.87762 4.88009 5.03888 5.18144 5.23829 5.40362 5.46532 5.52509 5.54234 5.60501 5.61068 5.63040 5.68139 5.72306 5.77565 5.80379 5.91170 5.98226 6.03702 6.07005 6.13227 6.19946 6.29058 6.34086 6.35979 6.39653 6.53153 6.81577 6.99520 7.17807 7.36269 7.49718 7.60373 8.30726 8.74924 8.86140 9.30434 9.46189 10.93959 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017670 B = 0.005034 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.225831 B = 5560.835146 C = 6672.645636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.130 4.130 5 C 0.135 3.865 6 N -0.633 5.633 7 C 0.696 3.304 8 O -0.603 6.603 9 N -0.731 5.731 10 C 0.232 3.768 11 C -0.540 4.540 12 H 0.078 0.922 13 C 0.079 3.921 14 N -0.893 5.893 15 Si 0.875 3.125 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.260 1.260 19 C 0.139 3.861 20 C -0.160 4.160 21 C -0.123 4.123 22 C -0.142 4.142 23 C -0.147 4.147 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.403 0.597 36 H 0.022 0.978 37 H 0.016 0.984 38 H 0.267 0.733 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.070 0.930 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.400 11.437 -6.065 20.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.169 4.169 5 C 0.012 3.988 6 N -0.370 5.370 7 C 0.397 3.603 8 O -0.482 6.482 9 N -0.392 5.392 10 C 0.109 3.891 11 C -0.578 4.578 12 H 0.096 0.904 13 C -0.125 4.125 14 N -0.530 5.530 15 Si 0.701 3.299 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.184 1.184 19 C 0.035 3.965 20 C -0.199 4.199 21 C -0.161 4.161 22 C -0.180 4.180 23 C -0.185 4.185 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.246 0.754 36 H 0.040 0.960 37 H 0.034 0.966 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.106 0.894 46 H 0.089 0.911 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.701 11.395 -6.637 19.749 hybrid contribution 0.488 -0.053 -0.119 0.505 sum -14.212 11.342 -6.756 19.397 Atomic orbital electron populations 1.21902 0.95498 1.01705 1.01458 1.21065 0.95538 0.96188 0.98645 1.21819 1.01186 0.95967 1.01332 1.22045 1.02097 0.95447 0.97293 1.21308 0.98015 0.91534 0.87979 1.47374 1.16541 1.58963 1.14108 1.16085 0.81148 0.79109 0.83917 1.90836 1.54831 1.67199 1.35354 1.46346 1.17222 1.55148 1.20446 1.19372 0.78302 0.93649 0.97801 1.21075 1.00162 1.34099 1.02474 0.90367 1.24759 0.98280 0.94166 0.95254 1.69880 1.24951 1.34555 1.23663 0.86836 0.82258 0.77950 0.82809 1.19898 1.20976 1.18415 1.21743 0.93512 0.96342 0.84917 1.23172 1.02782 0.99667 0.94262 1.22475 1.01278 0.94634 0.97669 1.22603 1.02461 0.97809 0.95132 1.22755 1.01102 0.96385 0.98303 0.92496 0.92819 0.92987 0.91060 0.92634 0.92958 0.92875 0.92187 0.91225 0.90244 0.91188 0.75422 0.95990 0.96594 0.92334 0.89235 0.88665 0.91215 0.91498 0.90536 0.90969 0.89415 0.91081 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.95 37.16 0.33 -0.89 16 2 C -0.10 -0.95 2.92 -90.62 -0.26 -1.21 16 3 C -0.15 -1.35 9.19 37.15 0.34 -1.01 16 4 C -0.13 -1.59 5.01 -26.73 -0.13 -1.73 16 5 C 0.14 1.80 5.09 -4.04 -0.02 1.78 16 6 N -0.63 -10.08 2.39 -170.52 -0.41 -10.49 16 7 C 0.70 14.64 7.21 -86.92 -0.63 14.01 16 8 O -0.60 -14.78 15.97 5.30 0.08 -14.70 16 9 N -0.73 -16.02 3.86 -66.41 -0.26 -16.27 16 10 C 0.23 5.95 4.50 -5.19 -0.02 5.93 16 11 C -0.54 -14.97 9.83 -34.44 -0.34 -15.31 16 12 H 0.08 2.23 7.02 -52.48 -0.37 1.87 16 13 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 14 N -0.89 -26.47 13.96 55.43 0.77 -25.70 16 15 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 16 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 19 C 0.14 1.83 3.33 -66.81 -0.22 1.61 16 20 C -0.16 -2.23 5.86 -25.03 -0.15 -2.37 16 21 C -0.12 -1.58 6.83 -24.70 -0.17 -1.74 16 22 C -0.14 -1.98 6.13 -25.07 -0.15 -2.14 16 23 C -0.15 -1.91 5.77 -25.61 -0.15 -2.06 16 24 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.20 7.49 -51.93 -0.39 0.81 16 34 H 0.07 0.74 6.43 -51.93 -0.33 0.41 16 35 H 0.40 7.92 1.52 -40.82 -0.06 7.85 16 36 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 37 H 0.02 0.43 7.57 -51.93 -0.39 0.03 16 38 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.09 0.94 7.90 -51.93 -0.41 0.53 16 40 H 0.10 1.67 5.34 -51.93 -0.28 1.40 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.09 1.54 5.50 -51.92 -0.29 1.26 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.07 1.14 7.46 -51.93 -0.39 0.75 16 LS Contribution 354.64 15.07 5.34 5.34 Total: -1.00 -31.74 354.64 -9.09 -40.83 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -8.28 Total: 6.87 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -1.67 Total: -2.98 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.11 Total: -52.46 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.08 Total: -14.70 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.74 -9.09 -40.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426435773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.570 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds