Wall clock time and date at job start Tue Mar 31 2020 05:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47285 * 2 1 4 4 C 1.53007 * 109.46941 * 119.99992 * 2 1 3 5 5 C 1.53004 * 109.47239 * 64.99753 * 4 2 1 6 6 N 1.46497 * 109.46858 * 179.97438 * 5 4 2 7 7 C 1.34776 * 120.00279 * 269.99641 * 6 5 4 8 8 O 1.21580 * 119.99769 * 4.52072 * 7 6 5 9 9 N 1.34772 * 120.00175 * 184.51278 * 7 6 5 10 10 C 1.46504 * 120.00169 * 184.73902 * 9 7 6 11 11 C 1.50701 * 109.47194 * 180.02562 * 10 9 7 12 12 H 1.08003 * 119.99566 * 359.97438 * 11 10 9 13 13 C 1.37872 * 119.99708 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99752 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00297 * 0.02562 * 13 11 10 16 16 H 1.48507 * 109.46839 * 89.99980 * 15 13 11 17 17 H 1.48496 * 109.47351 * 209.99559 * 15 13 11 18 18 H 1.48497 * 109.47300 * 330.00004 * 15 13 11 19 19 C 1.46502 * 119.99924 * 90.00257 * 6 5 4 20 20 C 1.54264 * 110.03171 * 230.88372 * 19 6 5 21 21 C 1.54970 * 104.15946 * 217.13391 * 20 19 6 22 22 C 1.54887 * 102.77579 * 37.88664 * 21 20 19 23 23 C 1.53872 * 110.03419 * 113.66303 * 19 6 5 24 24 H 1.08999 * 109.47127 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47171 * 300.00217 * 1 2 3 26 26 H 1.08995 * 109.46988 * 60.00182 * 1 2 3 27 27 H 1.08998 * 109.46726 * 239.99490 * 2 1 3 28 28 H 1.09001 * 109.47056 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46954 * 299.99833 * 3 2 1 30 30 H 1.08998 * 109.47655 * 60.00059 * 3 2 1 31 31 H 1.09003 * 109.47035 * 304.99880 * 4 2 1 32 32 H 1.09003 * 109.47056 * 185.00158 * 4 2 1 33 33 H 1.09003 * 109.47003 * 60.00107 * 5 4 2 34 34 H 1.08999 * 109.46770 * 299.99865 * 5 4 2 35 35 H 0.97002 * 120.00174 * 4.73317 * 9 7 6 36 36 H 1.09000 * 109.46245 * 299.99996 * 10 9 7 37 37 H 1.08997 * 109.47320 * 59.99905 * 10 9 7 38 38 H 0.97003 * 120.00132 * 180.02562 * 14 13 11 39 39 H 1.09006 * 110.01375 * 352.27647 * 19 6 5 40 40 H 1.08996 * 110.48843 * 335.78062 * 20 19 6 41 41 H 1.09002 * 110.48529 * 98.42996 * 20 19 6 42 42 H 1.08998 * 110.72046 * 279.57833 * 21 20 19 43 43 H 1.08997 * 110.91871 * 156.29699 * 21 20 19 44 44 H 1.09000 * 110.49096 * 203.40132 * 22 21 20 45 45 H 1.09010 * 110.59633 * 80.81600 * 22 21 20 46 46 H 1.09000 * 110.03782 * 238.57229 * 23 19 6 47 47 H 1.09005 * 110.03305 * 0.02562 * 23 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1955 1.1881 6 7 2.1240 -2.8862 2.3840 7 6 3.3459 -3.4548 2.3817 8 8 4.0752 -3.3246 1.4176 9 7 3.7595 -4.1676 3.4481 10 6 5.1245 -4.6981 3.4899 11 6 5.3315 -5.4512 4.7787 12 1 4.5268 -5.5268 5.4951 13 6 6.5480 -6.0437 5.0431 14 7 6.7288 -6.7006 6.1680 15 14 7.9399 -5.9123 3.8042 16 1 8.7477 -4.7004 4.0940 17 1 8.8030 -7.1169 3.8997 18 1 7.3755 -5.8152 2.4341 19 6 1.2845 -2.9589 3.5824 20 6 2.0847 -2.4949 4.8170 21 6 1.6001 -3.4279 5.9555 22 6 1.4336 -4.7890 5.2353 23 6 0.8703 -4.4167 3.8482 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6053 -0.2617 2.1370 32 1 3.1263 -0.6444 1.2953 33 1 2.0698 -2.6551 0.3004 34 1 0.5488 -2.2723 1.1422 35 1 3.1535 -4.3294 4.1880 36 1 5.2783 -5.3718 2.6470 37 1 5.8363 -3.8747 3.4315 38 1 7.5848 -7.1171 6.3543 39 1 0.3988 -2.3362 3.4559 40 1 3.1540 -2.6224 4.6486 41 1 1.8558 -1.4552 5.0513 42 1 0.6467 -3.0840 6.3565 43 1 2.3473 -3.4979 6.7459 44 1 0.7301 -5.4228 5.7752 45 1 2.3966 -5.2897 5.1341 46 1 -0.2164 -4.5015 3.8515 47 1 1.2942 -5.0703 3.0858 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426435773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:42 Heat of formation + Delta-G solvation = -60.662690 kcal Electronic energy + Delta-G solvation = -23873.969549 eV Core-core repulsion = 20669.504902 eV Total energy + Delta-G solvation = -3204.464647 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.91016 -38.73716 -37.99504 -36.18109 -34.98918 -34.30614 -30.82756 -29.70906 -29.55143 -28.10598 -27.88653 -25.00806 -23.49483 -22.35446 -21.90642 -20.94929 -20.58382 -18.95904 -18.08103 -17.85084 -16.69295 -16.47234 -16.32140 -16.01345 -15.83354 -15.30150 -15.02723 -14.79194 -14.46469 -14.27884 -14.25493 -14.08303 -13.66298 -13.17992 -13.05424 -12.91108 -12.75826 -12.67413 -12.51958 -12.11462 -12.07509 -12.00307 -11.95618 -11.86380 -11.73822 -11.70829 -11.52604 -11.40363 -11.34088 -11.06512 -10.91735 -9.99447 -9.37364 -8.40896 -6.47395 1.30191 1.32131 1.46254 1.81490 2.17585 2.27177 2.94088 3.15732 3.58789 3.63110 3.88814 3.98229 4.00417 4.10271 4.25775 4.41535 4.43698 4.53067 4.54005 4.60599 4.65715 4.70099 4.72889 4.80299 4.85726 4.91094 4.94058 4.99401 5.01253 5.06011 5.08644 5.16951 5.18601 5.21769 5.24925 5.28992 5.34959 5.42165 5.50506 5.54483 5.61842 5.77772 6.00394 6.21679 6.53166 7.11978 7.21200 7.68750 8.73553 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017670 B = 0.005034 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.225831 B = 5560.835146 C = 6672.645636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.121 4.121 5 C 0.131 3.869 6 N -0.621 5.621 7 C 0.690 3.310 8 O -0.645 6.645 9 N -0.732 5.732 10 C 0.245 3.755 11 C -0.543 4.543 12 H 0.058 0.942 13 C 0.033 3.967 14 N -0.927 5.927 15 Si 0.933 3.067 16 H -0.264 1.264 17 H -0.269 1.269 18 H -0.266 1.266 19 C 0.136 3.864 20 C -0.163 4.163 21 C -0.116 4.116 22 C -0.146 4.146 23 C -0.142 4.142 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.039 0.961 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.029 0.971 33 H 0.055 0.945 34 H 0.112 0.888 35 H 0.413 0.587 36 H 0.005 0.995 37 H 0.004 0.996 38 H 0.273 0.727 39 H 0.137 0.863 40 H 0.051 0.949 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.056 0.944 44 H 0.093 0.907 45 H 0.040 0.960 46 H 0.111 0.889 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.184 12.945 -6.388 23.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.160 4.160 5 C 0.009 3.991 6 N -0.357 5.357 7 C 0.392 3.608 8 O -0.528 6.528 9 N -0.394 5.394 10 C 0.120 3.880 11 C -0.581 4.581 12 H 0.077 0.923 13 C -0.168 4.168 14 N -0.565 5.565 15 Si 0.757 3.243 16 H -0.189 1.189 17 H -0.194 1.194 18 H -0.190 1.190 19 C 0.033 3.967 20 C -0.202 4.202 21 C -0.153 4.153 22 C -0.184 4.184 23 C -0.180 4.180 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.130 0.870 35 H 0.259 0.741 36 H 0.023 0.977 37 H 0.022 0.978 38 H 0.082 0.918 39 H 0.155 0.845 40 H 0.069 0.931 41 H 0.113 0.887 42 H 0.124 0.876 43 H 0.075 0.925 44 H 0.112 0.888 45 H 0.058 0.942 46 H 0.130 0.870 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.542 12.921 -6.938 22.865 hybrid contribution 1.278 -0.510 0.028 1.376 sum -16.264 12.411 -6.910 21.594 Atomic orbital electron populations 1.21868 0.93340 1.02408 1.02480 1.21045 0.97253 0.96068 0.96863 1.21815 1.00262 0.95761 1.02408 1.21951 0.99715 0.95104 0.99244 1.21573 1.00061 0.91540 0.85931 1.47450 1.14810 1.57480 1.15940 1.16304 0.82588 0.79068 0.82848 1.90794 1.56674 1.68641 1.36735 1.46184 1.16081 1.55590 1.21536 1.18965 0.80418 0.92646 0.95956 1.21192 0.99859 1.34253 1.02804 0.92339 1.25501 1.00595 0.93802 0.96907 1.69966 1.25974 1.35392 1.25182 0.85921 0.79540 0.78761 0.80081 1.18910 1.19374 1.19020 1.22109 0.94161 0.97322 0.83135 1.23154 1.00198 1.01531 0.95280 1.22474 1.02574 0.93608 0.96675 1.22586 1.00580 0.98612 0.96630 1.22755 1.03307 0.95530 0.96445 0.91905 0.91825 0.92006 0.92131 0.94182 0.91562 0.92100 0.90691 0.95158 0.92629 0.86983 0.74093 0.97737 0.97799 0.91770 0.84541 0.93067 0.88702 0.87570 0.92496 0.88818 0.94164 0.87032 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.95 71.98 0.64 -1.19 16 2 C -0.09 -1.69 2.92 -10.79 -0.03 -1.72 16 3 C -0.15 -2.46 9.19 71.98 0.66 -1.80 16 4 C -0.12 -2.81 5.01 30.60 0.15 -2.66 16 5 C 0.13 3.28 5.09 86.38 0.44 3.72 16 6 N -0.62 -19.20 2.39 -811.68 -1.94 -21.14 16 7 C 0.69 29.91 7.21 179.06 1.29 31.20 16 8 O -0.65 -33.04 15.97 -3.97 -0.06 -33.10 16 9 N -0.73 -33.51 3.86 -482.30 -1.86 -35.37 16 10 C 0.24 13.16 4.50 85.63 0.39 13.55 16 11 C -0.54 -31.41 9.83 25.60 0.25 -31.16 16 12 H 0.06 3.54 7.02 -2.91 -0.02 3.52 16 13 C 0.03 1.90 5.47 84.65 0.46 2.36 16 14 N -0.93 -56.01 13.96 21.45 0.30 -55.71 16 15 Si 0.93 45.73 27.47 68.60 1.88 47.61 16 16 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 17 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.27 -13.20 6.54 99.48 0.65 -12.55 16 19 C 0.14 3.16 3.33 45.71 0.15 3.32 16 20 C -0.16 -4.26 5.86 31.70 0.19 -4.08 16 21 C -0.12 -2.76 6.83 31.91 0.22 -2.54 16 22 C -0.15 -3.94 6.13 31.67 0.19 -3.75 16 23 C -0.14 -3.36 5.77 31.32 0.18 -3.18 16 24 H 0.06 0.73 6.56 -2.39 -0.02 0.71 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 1.68 7.49 -2.39 -0.02 1.66 16 34 H 0.11 1.89 6.43 -2.39 -0.02 1.88 16 35 H 0.41 16.95 1.52 -92.71 -0.14 16.81 16 36 H 0.00 0.27 7.20 -2.39 -0.02 0.25 16 37 H 0.00 0.23 7.57 -2.39 -0.02 0.21 16 38 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 39 H 0.14 2.03 7.90 -2.38 -0.02 2.01 16 40 H 0.05 1.83 5.34 -2.39 -0.01 1.82 16 41 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.04 1.48 5.50 -2.38 -0.01 1.47 16 46 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.05 1.37 7.46 -2.38 -0.02 1.35 16 Total: -1.00 -73.06 354.64 4.24 -68.82 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.73 Total: 26.84 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 5.19 Total: 2.07 kcal Atomic # 7 Polarization: -108.72 SS G_CDS: -3.50 Total: -112.23 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -0.06 Total: -33.10 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.88 Total: 47.61 kcal Total: -73.06 4.24 -68.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426435773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.155 kcal (2) G-P(sol) polarization free energy of solvation -73.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds