Wall clock time and date at job start Tue Mar 31 2020 05:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47292 * 2 1 4 4 C 1.52999 * 109.47247 * 120.00289 * 2 1 3 5 5 H 1.09002 * 108.87281 * 298.59690 * 4 2 1 6 6 C 1.54242 * 108.89846 * 179.97438 * 4 2 1 7 7 C 1.50465 * 108.52013 * 159.34694 * 6 4 2 8 8 C 1.54066 * 112.50026 * 94.15303 * 7 6 4 9 9 C 1.54072 * 112.81534 * 318.29055 * 8 7 6 10 10 H 1.08994 * 108.88015 * 78.95880 * 9 8 7 11 11 N 1.46499 * 108.87353 * 197.50343 * 9 8 7 12 12 C 1.34784 * 119.99893 * 274.99538 * 11 9 8 13 13 O 1.21588 * 119.99858 * 359.97438 * 12 11 9 14 14 N 1.34773 * 119.99935 * 179.72905 * 12 11 9 15 15 C 1.46496 * 119.99973 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47316 * 179.97438 * 15 14 12 17 17 H 1.08002 * 119.99971 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00060 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00031 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00108 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46864 * 60.00209 * 20 18 16 22 22 H 1.48496 * 109.47475 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47151 * 300.00620 * 20 18 16 24 24 C 1.50479 * 112.49500 * 318.27301 * 9 8 7 25 25 C 1.45542 * 108.82224 * 57.15492 * 4 2 1 26 26 H 1.08999 * 109.47675 * 59.99774 * 1 2 3 27 27 H 1.09000 * 109.47574 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47188 * 299.99948 * 1 2 3 29 29 H 1.09004 * 109.47104 * 239.99541 * 2 1 3 30 30 H 1.09003 * 109.46944 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47439 * 299.99861 * 3 2 1 32 32 H 1.09000 * 109.46888 * 60.00225 * 3 2 1 33 33 H 1.09004 * 109.62634 * 39.63661 * 6 4 2 34 34 H 1.09000 * 109.79266 * 279.15651 * 6 4 2 35 35 H 1.08997 * 108.87889 * 333.37645 * 7 6 4 36 36 H 1.08997 * 108.80030 * 214.87645 * 7 6 4 37 37 H 1.08993 * 108.82075 * 197.42399 * 8 7 6 38 38 H 1.09009 * 108.80964 * 79.14318 * 8 7 6 39 39 H 0.97005 * 120.00261 * 94.99750 * 11 9 8 40 40 H 0.97004 * 120.00018 * 359.97438 * 14 12 11 41 41 H 1.09007 * 109.47081 * 299.99672 * 15 14 12 42 42 H 1.08997 * 109.47795 * 59.99548 * 15 14 12 43 43 H 0.97003 * 120.00435 * 179.97438 * 19 18 16 44 44 H 1.08993 * 109.62584 * 213.86427 * 24 9 8 45 45 H 1.09003 * 109.62562 * 334.44677 * 24 9 8 46 46 H 1.09001 * 108.89860 * 303.40065 * 25 4 2 47 47 H 1.09008 * 108.89192 * 61.88583 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6921 -0.1856 2.1324 6 6 3.5823 -0.7141 1.2355 7 6 4.0738 -0.9435 2.6390 8 6 4.3683 -2.4284 2.9253 9 6 3.3010 -3.3728 2.3397 10 1 3.4856 -3.4950 1.2725 11 7 3.4149 -4.6794 2.9925 12 6 4.2967 -5.5885 2.5313 13 8 4.9971 -5.3244 1.5733 14 7 4.4053 -6.7885 3.1352 15 6 5.3640 -7.7764 2.6343 16 6 5.2887 -9.0225 3.4786 17 1 4.5962 -9.0733 4.3058 18 6 6.1038 -10.0978 3.1949 19 7 6.9474 -10.0358 2.1879 20 14 6.0109 -11.6420 4.2418 21 1 4.6383 -12.2045 4.1734 22 1 6.9827 -12.6435 3.7340 23 1 6.3383 -11.3054 5.6506 24 6 1.9026 -2.8520 2.5337 25 6 1.4921 -2.0695 1.2695 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.9408 0.2501 0.8749 34 1 3.9493 -1.5078 0.5847 35 1 3.3162 -0.5928 3.3397 36 1 4.9867 -0.3675 2.7900 37 1 4.4144 -2.5760 4.0042 38 1 5.3372 -2.6837 2.4960 39 1 2.8558 -4.8902 3.7567 40 1 3.8492 -6.9977 3.9020 41 1 5.1247 -8.0230 1.5999 42 1 6.3715 -7.3637 2.6856 43 1 7.5211 -10.7921 1.9885 44 1 1.2188 -3.6870 2.6858 45 1 1.8752 -2.1901 3.3993 46 1 0.4044 -2.0092 1.2298 47 1 1.8462 -2.6077 0.3902 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426450618.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:25 Heat of formation + Delta-G solvation = -66.744289 kcal Electronic energy + Delta-G solvation = -22790.225688 eV Core-core repulsion = 19585.497324 eV Total energy + Delta-G solvation = -3204.728365 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.14969 -38.80160 -36.02127 -34.03481 -33.37035 -32.28476 -31.97128 -29.63847 -27.67976 -26.88597 -24.85860 -24.08245 -22.37665 -21.42400 -20.11744 -19.93185 -19.36117 -17.93562 -16.52585 -15.90785 -15.52785 -14.98588 -14.90002 -14.46599 -14.37006 -14.18161 -13.99996 -13.54960 -13.24363 -13.12546 -12.79060 -12.44714 -12.29630 -12.06635 -11.94196 -11.87134 -11.80183 -11.58712 -11.13085 -11.00576 -10.93145 -10.91772 -10.78713 -10.59757 -10.28280 -10.24527 -10.17314 -10.10394 -9.34650 -9.29546 -8.70017 -8.58092 -7.69299 -6.11905 -4.18354 3.27811 3.31839 3.33528 3.48268 4.03636 4.35282 4.37691 4.49014 4.65175 4.76815 4.98301 5.09415 5.12551 5.16695 5.17761 5.23073 5.23906 5.36996 5.40751 5.42940 5.50153 5.56952 5.61636 5.71166 5.79081 5.84230 5.87628 5.95127 6.00473 6.06437 6.07953 6.15122 6.17351 6.32370 6.37312 6.43686 6.49524 7.04362 7.20455 7.57644 7.61346 7.62201 7.97181 8.10464 8.81151 9.02313 9.39925 9.54585 10.98358 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040601 B = 0.002782 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.474391 B =10061.399550 C =10188.840083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.096 4.096 3 C -0.149 4.149 4 C -0.078 4.078 5 H 0.066 0.934 6 C -0.122 4.122 7 C -0.112 4.112 8 C -0.129 4.129 9 C 0.167 3.833 10 H 0.084 0.916 11 N -0.756 5.756 12 C 0.692 3.308 13 O -0.602 6.602 14 N -0.731 5.731 15 C 0.268 3.732 16 C -0.541 4.541 17 H 0.061 0.939 18 C 0.063 3.937 19 N -0.886 5.886 20 Si 0.904 3.096 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.276 1.276 24 C -0.124 4.124 25 C -0.116 4.116 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.389 0.611 40 H 0.385 0.615 41 H 0.024 0.976 42 H 0.024 0.976 43 H 0.266 0.734 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.022 21.396 0.282 25.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.207 4.207 4 C -0.096 4.096 5 H 0.085 0.915 6 C -0.159 4.159 7 C -0.150 4.150 8 C -0.168 4.168 9 C 0.062 3.938 10 H 0.102 0.898 11 N -0.413 5.413 12 C 0.391 3.609 13 O -0.481 6.481 14 N -0.383 5.383 15 C 0.146 3.854 16 C -0.580 4.580 17 H 0.079 0.921 18 C -0.141 4.141 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.162 4.162 25 C -0.153 4.153 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.222 0.778 40 H 0.217 0.783 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.181 21.472 -0.735 24.698 hybrid contribution -0.432 -1.129 1.292 1.769 sum -12.613 20.344 0.557 23.943 Atomic orbital electron populations 1.21940 0.95544 1.01896 1.01431 1.21225 0.95484 0.96186 0.98597 1.21928 1.01365 0.96008 1.01350 1.20144 0.95448 0.96234 0.97816 0.91527 1.21564 0.94634 1.02231 0.97483 1.21262 1.00799 0.95968 0.96934 1.22353 0.99913 0.93695 1.00859 1.20543 0.93607 0.81344 0.98322 0.89795 1.45465 1.43749 1.15425 1.36626 1.16209 0.80792 0.80824 0.83036 1.90856 1.47843 1.79521 1.29862 1.45720 1.43951 1.14396 1.34281 1.18944 0.87027 0.84446 0.94941 1.21202 1.22547 0.99063 1.15182 0.92052 1.24946 0.94933 0.98819 0.95357 1.69971 1.22758 1.31655 1.27962 0.86475 0.77931 0.82158 0.80321 1.20108 1.21091 1.20118 1.21660 0.95895 1.00022 0.98635 1.20590 1.00933 0.95797 0.98006 0.93030 0.92178 0.92856 0.91190 0.92132 0.93102 0.92882 0.91411 0.91248 0.92341 0.92438 0.92282 0.91521 0.77813 0.78281 0.95844 0.95844 0.92439 0.91103 0.91287 0.91507 0.91739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.70 37.15 0.32 -0.73 16 2 C -0.10 -0.74 2.48 -90.62 -0.22 -0.96 16 3 C -0.15 -1.04 8.91 37.16 0.33 -0.71 16 4 C -0.08 -0.65 1.34 -93.49 -0.13 -0.77 16 5 H 0.07 0.53 7.47 -51.93 -0.39 0.15 16 6 C -0.12 -1.14 4.90 -27.35 -0.13 -1.28 16 7 C -0.11 -1.10 5.31 -27.44 -0.15 -1.25 16 8 C -0.13 -1.65 5.41 -25.61 -0.14 -1.79 16 9 C 0.17 2.23 1.98 -68.63 -0.14 2.10 16 10 H 0.08 1.34 5.98 -51.93 -0.31 1.03 16 11 N -0.76 -11.59 4.91 -59.37 -0.29 -11.89 16 12 C 0.69 14.65 8.52 -86.91 -0.74 13.91 16 13 O -0.60 -15.34 15.96 5.29 0.08 -15.26 16 14 N -0.73 -16.09 5.55 -66.41 -0.37 -16.45 16 15 C 0.27 7.33 5.43 -5.19 -0.03 7.31 16 16 C -0.54 -15.00 9.28 -34.44 -0.32 -15.32 16 17 H 0.06 1.58 7.60 -52.49 -0.40 1.19 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 20 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 C -0.12 -1.23 5.18 -27.34 -0.14 -1.37 16 25 C -0.12 -1.05 4.21 -29.60 -0.12 -1.17 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.42 6.26 -51.93 -0.33 0.10 16 28 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.43 6.02 -51.93 -0.31 0.11 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.57 5.62 -51.93 -0.29 0.28 16 34 H 0.07 0.78 6.99 -51.93 -0.36 0.42 16 35 H 0.06 0.52 6.63 -51.93 -0.34 0.17 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 38 H 0.07 1.05 8.14 -51.92 -0.42 0.62 16 39 H 0.39 4.80 8.55 -40.82 -0.35 4.45 16 40 H 0.39 7.24 8.34 -40.82 -0.34 6.90 16 41 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.07 0.69 7.89 -51.93 -0.41 0.28 16 45 H 0.07 0.61 6.98 -51.93 -0.36 0.25 16 46 H 0.07 0.54 5.91 -51.93 -0.31 0.23 16 47 H 0.06 0.67 7.47 -51.92 -0.39 0.29 16 LS Contribution 355.09 15.07 5.35 5.35 Total: -1.00 -32.40 355.09 -9.46 -41.86 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -8.25 Total: 6.45 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -1.70 Total: -0.36 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.08 Total: -54.15 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: 0.08 Total: -15.26 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.40 -9.46 -41.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426450618.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.886 kcal (2) G-P(sol) polarization free energy of solvation -32.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds