Wall clock time and date at job start Tue Mar 31 2020 05:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47442 * 2 1 4 4 C 1.53005 * 109.47208 * 239.99395 * 2 1 3 5 5 H 1.09006 * 109.62311 * 60.23303 * 4 2 1 6 6 C 1.54236 * 109.63170 * 299.84855 * 4 2 1 7 7 C 1.45534 * 112.40810 * 160.29945 * 6 4 2 8 8 C 1.54245 * 112.40943 * 61.93259 * 7 6 4 9 9 C 1.50470 * 108.52524 * 280.01846 * 8 7 6 10 10 H 1.09002 * 108.87464 * 333.36838 * 9 8 7 11 11 N 1.46493 * 108.87611 * 214.92630 * 9 8 7 12 12 C 1.34773 * 120.00592 * 84.99590 * 11 9 8 13 13 O 1.21593 * 119.99658 * 0.02562 * 12 11 9 14 14 N 1.34775 * 120.00605 * 179.97438 * 12 11 9 15 15 C 1.46500 * 120.00061 * 179.97438 * 14 12 11 16 16 C 1.50706 * 109.47143 * 180.02562 * 15 14 12 17 17 H 1.08005 * 119.99816 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00385 * 180.02562 * 16 15 14 19 19 N 1.31506 * 120.00122 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99742 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47371 * 90.00114 * 20 18 16 22 22 H 1.48501 * 109.46865 * 210.00246 * 20 18 16 23 23 H 1.48504 * 109.47040 * 329.99973 * 20 18 16 24 24 C 1.54062 * 112.50031 * 94.14418 * 9 8 7 25 25 C 1.50473 * 109.63004 * 180.61458 * 4 2 1 26 26 H 1.09000 * 109.46865 * 60.00240 * 1 2 3 27 27 H 1.09000 * 109.46813 * 300.00331 * 1 2 3 28 28 H 1.08995 * 109.47221 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47158 * 120.00223 * 2 1 3 30 30 H 1.08993 * 109.47540 * 53.25994 * 3 2 1 31 31 H 1.09006 * 109.47319 * 173.26667 * 3 2 1 32 32 H 1.09002 * 109.46867 * 293.25645 * 3 2 1 33 33 H 1.09003 * 108.88976 * 281.05304 * 6 4 2 34 34 H 1.09003 * 108.89315 * 39.54155 * 6 4 2 35 35 H 1.09002 * 108.89866 * 182.68894 * 7 6 4 36 36 H 1.09005 * 108.89980 * 301.27728 * 7 6 4 37 37 H 1.09005 * 109.61783 * 39.72703 * 8 7 6 38 38 H 1.08994 * 109.62856 * 160.30145 * 8 7 6 39 39 H 0.97005 * 119.99705 * 264.99497 * 11 9 8 40 40 H 0.96997 * 119.99710 * 0.02562 * 14 12 11 41 41 H 1.08997 * 109.47472 * 300.00773 * 15 14 12 42 42 H 1.08999 * 109.46901 * 60.01088 * 15 14 12 43 43 H 0.97004 * 119.99602 * 180.02562 * 19 18 16 44 44 H 1.09002 * 108.81425 * 79.14422 * 24 9 8 45 45 H 1.08995 * 108.81609 * 197.53570 * 24 9 8 46 46 H 1.08997 * 108.87692 * 334.64578 * 25 4 2 47 47 H 1.09001 * 108.87187 * 93.08833 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 1 1.6814 -0.2072 -2.1409 6 6 1.5311 -2.1774 -1.2509 7 6 1.5745 -2.7787 -2.5754 8 6 3.0086 -2.8597 -3.1377 9 6 3.3839 -1.5098 -3.6864 10 1 2.4761 -0.9862 -3.9862 11 7 4.2318 -1.6969 -4.8663 12 6 3.6701 -1.8963 -6.0751 13 8 2.4595 -1.9206 -6.1863 14 7 4.4501 -2.0679 -7.1607 15 6 3.8395 -2.2853 -8.4745 16 6 4.9216 -2.4476 -9.5108 17 1 5.9603 -2.3945 -9.2197 18 6 4.5856 -2.6637 -10.8303 19 7 5.5300 -2.8058 -11.7345 20 14 2.7891 -2.7547 -11.3339 21 1 2.3059 -1.3970 -11.6919 22 1 2.6486 -3.6553 -12.5063 23 1 1.9845 -3.2844 -10.2037 24 6 4.1415 -0.6461 -2.6600 25 6 3.5447 -0.7367 -1.2452 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.5817 1.9900 0.8235 31 1 3.1234 1.4448 0.1205 32 1 1.7786 1.9203 -0.9442 33 1 2.1491 -2.7680 -0.5746 34 1 0.5026 -2.1922 -0.8900 35 1 1.1598 -3.7852 -2.5200 36 1 0.9641 -2.1828 -3.2540 37 1 3.6991 -3.1360 -2.3408 38 1 3.0481 -3.6027 -3.9342 39 1 5.1975 -1.6772 -4.7776 40 1 5.4158 -2.0482 -7.0720 41 1 3.2264 -3.1860 -8.4457 42 1 3.2156 -1.4291 -8.7312 43 1 5.2935 -2.9576 -12.6630 44 1 5.1813 -0.9715 -2.6259 45 1 4.1097 0.3940 -2.9841 46 1 3.9043 0.1062 -0.6550 47 1 3.8866 -1.6615 -0.7807 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426450619.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:29 Heat of formation + Delta-G solvation = -63.527534 kcal Electronic energy + Delta-G solvation = -22958.990516 eV Core-core repulsion = 19754.401640 eV Total energy + Delta-G solvation = -3204.588876 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.17470 -38.85293 -36.00692 -34.14918 -33.66329 -32.37232 -32.00779 -29.74237 -27.73946 -27.34940 -25.04258 -24.11649 -21.99328 -21.03614 -20.52312 -20.13464 -19.35898 -18.07433 -16.46499 -16.26657 -15.39579 -15.19655 -14.88779 -14.54014 -14.53138 -14.05984 -13.97956 -13.68450 -13.53956 -13.08130 -12.94814 -12.57119 -12.39003 -12.28495 -12.15045 -11.98619 -11.89251 -11.60199 -11.12350 -11.08400 -10.93606 -10.80046 -10.71851 -10.61450 -10.33736 -10.22050 -10.12339 -9.92845 -9.49983 -9.39951 -8.77764 -8.70212 -7.95138 -6.17908 -4.19419 3.29067 3.32802 3.39379 3.46266 3.88479 4.35806 4.37268 4.45596 4.59278 4.77097 4.84389 4.95025 5.06029 5.13584 5.17578 5.18335 5.27894 5.31002 5.37868 5.41046 5.46165 5.51977 5.61185 5.66744 5.74068 5.80595 5.85525 5.92564 5.97010 6.06576 6.08811 6.12773 6.16578 6.24896 6.35166 6.43005 6.44567 6.80280 6.95462 7.16373 7.30441 7.47121 7.65153 8.32928 8.74564 8.87409 9.29037 9.44904 10.94153 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032358 B = 0.003111 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.104917 B = 8997.002971 C = 9230.093257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.150 4.150 4 C -0.084 4.084 5 H 0.075 0.925 6 C -0.115 4.115 7 C -0.117 4.117 8 C -0.125 4.125 9 C 0.166 3.834 10 H 0.084 0.916 11 N -0.755 5.755 12 C 0.694 3.306 13 O -0.603 6.603 14 N -0.725 5.725 15 C 0.239 3.761 16 C -0.541 4.541 17 H 0.079 0.921 18 C 0.077 3.923 19 N -0.894 5.894 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.260 1.260 24 C -0.121 4.121 25 C -0.113 4.113 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.390 0.610 40 H 0.391 0.609 41 H 0.022 0.978 42 H 0.017 0.983 43 H 0.267 0.733 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.942 4.694 25.826 26.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 C -0.207 4.207 4 C -0.103 4.103 5 H 0.093 0.907 6 C -0.152 4.152 7 C -0.155 4.155 8 C -0.164 4.164 9 C 0.061 3.939 10 H 0.102 0.898 11 N -0.411 5.411 12 C 0.394 3.606 13 O -0.483 6.483 14 N -0.377 5.377 15 C 0.116 3.884 16 C -0.579 4.579 17 H 0.097 0.903 18 C -0.127 4.127 19 N -0.532 5.532 20 Si 0.703 3.297 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.184 1.184 24 C -0.160 4.160 25 C -0.150 4.150 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.223 0.777 40 H 0.224 0.776 41 H 0.040 0.960 42 H 0.035 0.965 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.040 4.636 25.458 26.572 hybrid contribution 0.157 -0.065 -0.424 0.457 sum -5.883 4.571 25.033 26.119 Atomic orbital electron populations 1.21933 0.95427 1.01886 1.01574 1.21129 0.95661 0.95934 0.98131 1.21922 1.00973 0.96068 1.01775 1.21030 0.95248 0.95846 0.98128 0.90672 1.20651 1.01499 0.95289 0.97779 1.20394 0.97104 1.01001 0.96971 1.21793 0.96382 0.97732 1.00445 1.20592 0.94176 0.95343 0.83824 0.89793 1.45408 1.09276 1.79844 1.06562 1.16138 0.85821 0.78230 0.80419 1.90852 1.12553 1.59490 1.85399 1.45402 1.09075 1.75688 1.07526 1.19330 0.94511 0.96037 0.78513 1.21109 0.93817 1.51403 0.91586 0.90346 1.24783 0.97759 0.93996 0.96130 1.69883 1.32622 1.48489 1.02179 0.86809 0.85343 0.78720 0.78781 1.19873 1.20970 1.18422 1.22097 0.99427 1.00037 0.94415 1.21386 0.95298 1.02317 0.96031 0.92620 0.93067 0.92227 0.91450 0.92971 0.92412 0.92566 0.92473 0.91813 0.92370 0.91613 0.91965 0.91203 0.77710 0.77564 0.96003 0.96461 0.92315 0.91787 0.91787 0.91363 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.91 37.16 0.33 -0.76 16 2 C -0.09 -0.66 2.47 -90.62 -0.22 -0.88 16 3 C -0.15 -1.04 8.79 37.16 0.33 -0.72 16 4 C -0.08 -0.71 1.43 -91.23 -0.13 -0.84 16 5 H 0.07 0.75 7.00 -51.93 -0.36 0.39 16 6 C -0.12 -1.01 4.63 -29.60 -0.14 -1.15 16 7 C -0.12 -1.30 5.27 -29.60 -0.16 -1.45 16 8 C -0.12 -1.51 5.27 -27.34 -0.14 -1.66 16 9 C 0.17 2.11 1.98 -68.64 -0.14 1.97 16 10 H 0.08 1.28 5.98 -51.93 -0.31 0.97 16 11 N -0.75 -11.06 4.92 -59.38 -0.29 -11.36 16 12 C 0.69 13.94 8.35 -86.92 -0.73 13.21 16 13 O -0.60 -14.43 15.96 5.28 0.08 -14.34 16 14 N -0.72 -15.28 5.55 -66.41 -0.37 -15.65 16 15 C 0.24 6.06 4.50 -5.19 -0.02 6.04 16 16 C -0.54 -15.12 9.83 -34.44 -0.34 -15.46 16 17 H 0.08 2.27 7.84 -52.48 -0.41 1.86 16 18 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 19 N -0.89 -26.87 13.96 55.43 0.77 -26.09 16 20 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 21 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 24 C -0.12 -1.15 5.39 -25.75 -0.14 -1.29 16 25 C -0.11 -0.90 4.74 -27.57 -0.13 -1.03 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.42 6.07 -51.93 -0.31 0.11 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.38 6.30 -51.93 -0.33 0.05 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.47 7.48 -51.93 -0.39 0.08 16 34 H 0.06 0.53 5.65 -51.93 -0.29 0.23 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.85 7.47 -51.93 -0.39 0.46 16 37 H 0.06 0.65 6.99 -51.93 -0.36 0.29 16 38 H 0.07 1.04 7.79 -51.93 -0.40 0.64 16 39 H 0.39 4.63 8.47 -40.82 -0.35 4.29 16 40 H 0.39 7.25 8.34 -40.82 -0.34 6.91 16 41 H 0.02 0.59 7.20 -51.93 -0.37 0.21 16 42 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.06 0.54 7.92 -51.93 -0.41 0.13 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.49 5.58 -51.93 -0.29 0.20 16 47 H 0.06 0.48 6.66 -51.93 -0.35 0.13 16 LS Contribution 351.23 15.07 5.29 5.29 Total: -1.00 -32.21 351.23 -9.09 -41.30 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -8.19 Total: 5.57 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -1.73 Total: -1.89 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.11 Total: -53.10 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.08 Total: -14.34 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.21 -9.09 -41.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426450619.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.223 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds